mRNA_L-elsbetiae_contig13383.2608.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13383.2608.1
Unique NamemRNA_L-elsbetiae_contig13383.2608.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13383.2608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13383contigL-elsbetiae_contig13383:1647..4913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size791
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13383.2608.1prot_L-elsbetiae_contig13383.2608.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13383 1694..4249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.7298243-UTR-L-elsbetiae_contig13383:1646..16931622815510.7298243-UTR-L-elsbetiae_contig13383:1646..1693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 1647..1693 -
1691682934.0707562-UTR-L-elsbetiae_contig13383:1646..16931691682934.0707562-UTR-L-elsbetiae_contig13383:1646..1693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 1647..1693 -
1622815510.8069515-UTR-L-elsbetiae_contig13383:4249..42571622815510.8069515-UTR-L-elsbetiae_contig13383:4249..4257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 4250..4257 -
1691682934.1506352-UTR-L-elsbetiae_contig13383:4249..42571691682934.1506352-UTR-L-elsbetiae_contig13383:4249..4257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 4250..4257 -
1622815510.8197386-UTR-L-elsbetiae_contig13383:4578..46391622815510.8197386-UTR-L-elsbetiae_contig13383:4578..4639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 4579..4639 -
1691682934.1600688-UTR-L-elsbetiae_contig13383:4578..46391691682934.1600688-UTR-L-elsbetiae_contig13383:4578..4639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 4579..4639 -
1622815510.8325732-UTR-L-elsbetiae_contig13383:4829..49131622815510.8325732-UTR-L-elsbetiae_contig13383:4829..4913Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 4830..4913 -
1691682934.1718192-UTR-L-elsbetiae_contig13383:4829..49131691682934.1718192-UTR-L-elsbetiae_contig13383:4829..4913Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13383 4830..4913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.741883-CDS-L-elsbetiae_contig13383:1693..17751622815510.741883-CDS-L-elsbetiae_contig13383:1693..1775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 1694..1775 -
1691682934.0834286-CDS-L-elsbetiae_contig13383:1693..17751691682934.0834286-CDS-L-elsbetiae_contig13383:1693..1775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 1694..1775 -
1622815510.7511852-CDS-L-elsbetiae_contig13383:1998..21501622815510.7511852-CDS-L-elsbetiae_contig13383:1998..2150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 1999..2150 -
1691682934.0985434-CDS-L-elsbetiae_contig13383:1998..21501691682934.0985434-CDS-L-elsbetiae_contig13383:1998..2150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 1999..2150 -
1622815510.7604573-CDS-L-elsbetiae_contig13383:2492..25871622815510.7604573-CDS-L-elsbetiae_contig13383:2492..2587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 2493..2587 -
1691682934.1095977-CDS-L-elsbetiae_contig13383:2492..25871691682934.1095977-CDS-L-elsbetiae_contig13383:2492..2587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 2493..2587 -
1622815510.77019-CDS-L-elsbetiae_contig13383:3239..33361622815510.77019-CDS-L-elsbetiae_contig13383:3239..3336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 3240..3336 -
1691682934.119418-CDS-L-elsbetiae_contig13383:3239..33361691682934.119418-CDS-L-elsbetiae_contig13383:3239..3336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 3240..3336 -
1622815510.7801204-CDS-L-elsbetiae_contig13383:3551..36561622815510.7801204-CDS-L-elsbetiae_contig13383:3551..3656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 3552..3656 -
1691682934.131094-CDS-L-elsbetiae_contig13383:3551..36561691682934.131094-CDS-L-elsbetiae_contig13383:3551..3656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 3552..3656 -
1622815510.7937236-CDS-L-elsbetiae_contig13383:4189..42491622815510.7937236-CDS-L-elsbetiae_contig13383:4189..4249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 4190..4249 -
1691682934.1402886-CDS-L-elsbetiae_contig13383:4189..42491691682934.1402886-CDS-L-elsbetiae_contig13383:4189..4249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13383 4190..4249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13383.2608.1

>prot_L-elsbetiae_contig13383.2608.1 ID=prot_L-elsbetiae_contig13383.2608.1|Name=mRNA_L-elsbetiae_contig13383.2608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
MARTKRTAVEAGDDERNGNKKKTATLRLAAYSRGFPDYCGNFVSRAMFEA
RQGAEVGDDASISSADGSSDDEWFVSGDEVSDGVYIPEASGHGTDDPPTP
GNHEETIQFRAGESTGGLEGRSAEVLWSQQEDDMLVAAVAKAEAESWKPF
WPKVYDAFSKEGTRSSSESRKPNAVKYRYIHALDPSLARRNVATPV*
back to top

mRNA from alignment at L-elsbetiae_contig13383:1647..4913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13383.2608.1 ID=mRNA_L-elsbetiae_contig13383.2608.1|Name=mRNA_L-elsbetiae_contig13383.2608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3267bp|location=Sequence derived from alignment at L-elsbetiae_contig13383:1647..4913- (Laminarionema elsbetiae ELsaHSoW15)
AGACAGCAGAGTACATTTCCAAGCCCAGCAACCAGCTTCTGGAGTTTAAT
ACACCTGGCCACAACTATCTTCTCTTCAACAAACGTACGTATCTATCGTC
TCGGTCCAAACTCAAGGTCAGAGGTGTGTGTTTCCAATGTGAGTCGTACC
GGAGCATGACGCAGCCAACCAGCTCGTCTCTCACCACACACTACTCTAGA
CCCGAGTCCTCCTATCAGGAGGCCTCCATTTGTTTGGTAATAGGTATCTT
GCCACGCTGCCAACCCACTTTCAGCAGCGAGCAGGAGAGGCATCCTCGGA
GAAGAGGAGTGTCACGAAAGGGGCTGGTACGTGAGGTGAGTCGAGTTGAG
TCTGGCATGGCCATGCCCTTGCAATATCGGTGACAGCAGTCCAGATAAAG
CCAGATGATACATACCACTCTGTAGCGCGCGCGATACCCTTTCTGCGGTG
TAGCCATGGTCTTCTGCGGGCGAGAGCGAGAGCACGGTATCTCAACAGAG
AAAGGACCTGCCTCATTCCTTTGAGACAGCAGCACATAAATGCAACACCT
CGCCCACCAATGTAGATAATCGACCTGGGGGATCAAGACACCATCTGATG
GTGATCTTGGTGTTGTCTGGTCGATGGCTCTCGTTGACCCCGTTTGGTAA
TAATAGGAGTACCCATGGCTAGGACCAAGCGGACGGCCGTAGAGGCTGGA
GACGACGAAAGGAATGGAAATAAGGTGAGCGCGCACGACCGTTAACCTGG
CTGTATATGTAGTCCACGCCTGCGCATCATCACGCGCGATTGGAGAGCAA
AAAGAGTAGTCTAGTCTTCAGACAGGTACTTATCTAGATAGACTATGTAG
CCTAGACTAGTTGTGTAACCGGTATCGACCCGACCACGCAATCGGGTGGG
CGGCGCGTGCAATAAATGCTACATGGTTTTCGAGCTGAAGGTGGCAGTCT
ACATAGTGGTGGGATGTATCTCTACGTGGAACGGTCGTGCACCTTCGCCC
GTCTTTCATCTCGCCCGTCGATGTATCGGTAGCTACAACTTTACGTAGAT
CATAGTAAAGTAGCGTTGTATCTACTCCGTACGTAGACAGGGTCTGTGGA
GACATCTAACTGACTACATACAGTAGAGTAGTGGTCGTATTGTCGTTTCA
ATGTTGGTCTGGCGCCGTTCATCTGATATGTACATGTAGTGCAACTTTCG
CGTCAATGGTTCGTGCCTGTCTCCCTTCTCCGTCCTGGCTCTCTCTCTCT
CTCCCAGAAAAAAACGGCAACCTTGCGACTGGCGGCCTACTCCCGCGGGT
TTCCCGATTATTGCGGCAACTTCGTAAGCCGTGCTATGTTCGAAGCGCGT
CAGGGGGCAGAGGCAAGATATAGGAGTTGAATGGGCAGGGGTGTGCCGTG
GTACGGCACAGAAAAGCAACCCAGTGGCCGAGATGTATTTGCTGCCACCA
AACGCCCACATCACTATCTGACTGTGGGCGCCTTAGAAAAGTCTAGTCTA
GCTATACACGCATTCTACCTGCTGCTGCTGTGCCTCTTCCAAACTGCTGC
GCTTGTATACTTCAACGATTCCCCCAGGTAGGAGACGACGCCAGCATCTC
TTCTGCGGACGGCAGCTCGGATGATGAATGGTTCGTCTCCGGCGATGAGG
TTTCCGACGGCGTCTATATTCCTGGTGAGAAACTACTGGCAGTTGTTGTT
CGGCGTCGGCCCCGCGGGAATAACACATGGGGGCGGTGCAGTATGTACAT
GTATGTTGGCCACATGACGGGGGATTCTGTATGTAGGTATTATACCTCCT
TGGTTTCGCCGCTGGACCCTAGCTCGCGGGATTTTCGCTATCCCTTCGCC
CCGACTACCTCGAGCGATAAAATCACGCCGACACTGGCAGCTTTGGACGA
TAATACTCCGTACCCTGGTCGGTAAATGCAACGATGATTTCGCCCAATGT
TTCGCTCGCTAGATATGTGTATCTAGTCCGTAGATTTGGTTTGGAGTCTA
GTACGTAAAAGGTGCAGGCACCGCGGCGGCGGAATACGCGACAACCGATT
TGGGAAGATTTGCAGTGATAGTAGTGATTACAAACGAGTGTGTGTGTGTG
TGTGTGTGTATCTATGTGCGCCGTGGTTGCTTCCGTTTTCTATTCCATCC
GCTAGCTGTCCTTGCCGTTCCCGGTGCCCTGTAATCCAATTGGTATCTCT
TTATGGTGAGGTTTGAACCCCGCCCACACACACCAAGATCTACCTACGTA
TTAGACTATCATATTTGAGCCCCAAGTCGTCCACATGATACGACCTACGC
TTTGACCTGCGCCCCGTGCTTCGCAGAAGCGTCTGGGCATGGTACCGACG
ACCCGCCTACACCTGGAAACCACGAAGAAACTATCCAGTTCCGCGCTGGC
GAAAGCACCGGGGGCCTAGAGGTGACTGAACTAGAGGCCACATAGTCTAT
CTATGTGTCTATCTACAGTAGTAGATATCTACATCTAGTCTAGACTAGAC
CGACCGACGAAGATTTCTCATATTTAATGAGTGAGCAACCCTTCCAAAGT
GTGGCCTTCTGTTAAGGTGGTAATTTATCTAATATTGTCTGTCCGCTACA
TGTATACTGTAGTCTACATGTAGATCCTACCTCAGTTTCGTCCACCTTTC
TTCTCCGTGAAGTTGCTGGGTCAGCCAGCGAGCGGTCAACCACACCACAG
CCAGCGCTCGCTTACGACTGTAGTCTATGTACACGTTGTTTGGAAATAAT
ACCCCTGGAACAGGGCCGAAGCGCCGAGGTCCTGTGGTCGCAGCAAGAGG
ACGATATGCTGGTGGCTGCAGTGGCCAAGGCGGAAGCCGAAAGCTGGAAA
CCGTTCTGGCCGAAGGTCTACGATGCTTTCAGCAAAGAAGGAACCAGGTC
CTCGTCCGAATCAAGGTATCATAATGCGTCTCGCCGATAGCACCTAACCC
TCATCGGAAGTACTTTGGATTAAGAGTTCAACTCCGTCCCGAGAGAGCCG
TGTATTAGCACAACATGATTGCCGTCGATGTACTGTGTAGTAAACGTTAC
CGAGTCGTGCAAGCTCAATTCTGACCCACCCACCCCCAATGAAGTATGTA
TTCACCTACACCAACCCGTGCCCGTCTTGGTACCGCAGGAAGCCCAATGC
GGTCAAGTACCGCTACATTCATGCCCTGGACCCGAGTCTGGCTCGGCGAA
ACGTAGCTACTCCAGTCTGAGGCCGCCTACAAGTAGCAGTTGTCGCAACA
GAGTAGGAAGGCAGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13383:1647..4913-

>mRNA_L-elsbetiae_contig13383.2608.1 ID=mRNA_L-elsbetiae_contig13383.2608.1|Name=mRNA_L-elsbetiae_contig13383.2608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig13383:1647..4913- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAGGACCAAGCGGACGGCCGTAGAGGCTGGAGACGACGAAAGGAA
TGGAAATAAGATGGCTAGGACCAAGCGGACGGCCGTAGAGGCTGGAGACG
ACGAAAGGAATGGAAATAAGAAAAAAACGGCAACCTTGCGACTGGCGGCC
TACTCCCGCGGGTTTCCCGATTATTGCGGCAACTTCGTAAGCCGTGCTAT
GTTCGAAGCGCGTCAGGGGGCAGAGAAAAAAACGGCAACCTTGCGACTGG
CGGCCTACTCCCGCGGGTTTCCCGATTATTGCGGCAACTTCGTAAGCCGT
GCTATGTTCGAAGCGCGTCAGGGGGCAGAGGTAGGAGACGACGCCAGCAT
CTCTTCTGCGGACGGCAGCTCGGATGATGAATGGTTCGTCTCCGGCGATG
AGGTTTCCGACGGCGTCTATATTCCTGGTAGGAGACGACGCCAGCATCTC
TTCTGCGGACGGCAGCTCGGATGATGAATGGTTCGTCTCCGGCGATGAGG
TTTCCGACGGCGTCTATATTCCTGAAGCGTCTGGGCATGGTACCGACGAC
CCGCCTACACCTGGAAACCACGAAGAAACTATCCAGTTCCGCGCTGGCGA
AAGCACCGGGGGCCTAGAGAAGCGTCTGGGCATGGTACCGACGACCCGCC
TACACCTGGAAACCACGAAGAAACTATCCAGTTCCGCGCTGGCGAAAGCA
CCGGGGGCCTAGAGGGCCGAAGCGCCGAGGTCCTGTGGTCGCAGCAAGAG
GACGATATGCTGGTGGCTGCAGTGGCCAAGGCGGAAGCCGAAAGCTGGAA
ACCGTTCTGGCCGAAGGTCTACGATGCTTTCAGCAAAGAAGGAACCAGGT
CCTCGTCCGAATCAAGGGCCGAAGCGCCGAGGTCCTGTGGTCGCAGCAAG
AGGACGATATGCTGGTGGCTGCAGTGGCCAAGGCGGAAGCCGAAAGCTGG
AAACCGTTCTGGCCGAAGGTCTACGATGCTTTCAGCAAAGAAGGAACCAG
GTCCTCGTCCGAATCAAGGAAGCCCAATGCGGTCAAGTACCGCTACATTC
ATGCCCTGGACCCGAGTCTGGCTCGGCGAAACGTAGCTACTCCAGTCTGA
GAAGCCCAATGCGGTCAAGTACCGCTACATTCATGCCCTGGACCCGAGTC
TGGCTCGGCGAAACGTAGCTACTCCAGTCTGA
back to top