mRNA_L-elsbetiae_contig13374.2603.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13374.2603.1
Unique NamemRNA_L-elsbetiae_contig13374.2603.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: A0A6H5KBU9_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-16
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    4 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNA KEV  D
Sbjct:  576 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNAKKEVGAD 618
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: D7G664_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G664_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.360e-15
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    4 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            TKRRMLGNIQFIGELYKKSMLKENVMKTCVE LLNA KEV  D
Sbjct:   20 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKEVATD 62
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: A0A1V9Y791_9STRA (Eukaryotic translation initiation factor 4 gamma n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y791_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNAT 114
            TKRRMLGNI+FIGELYKK ML+E +M  C++ LLN T
Sbjct:  843 TKRRMLGNIRFIGELYKKGMLQERIMHECIKKLLNVT 879
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: A0A1V9YEM4_9STRA (Eukaryotic translation initiation factor 4 gamma n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEM4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    4 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            TKRRMLGNI+FIGELYKK ML+E +M  CV  +LN T+    D
Sbjct:  845 TKRRMLGNIRFIGELYKKGMLQERIMHECVAKMLNVTRAPGED 887
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: UPI000900CF5C (eukaryotic translation initiation factor 4G-like isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI000900CF5C)

HSP 1 Score: 55.8 bits (133), Expect = 7.110e-8
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            + +RRMLGNI+ IGELYKK ML E +M  C+++LL  T+  NPD
Sbjct: 1413 KARRRMLGNIRLIGELYKKKMLTERIMHECIKNLLGETENQNPD 1456
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: A0A0D2WVB2_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WVB2_CAPO3)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-7
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 KRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            KR+MLGNI+FIGEL+K  MLKE V+  C++ LL   K V+PD
Sbjct:  296 KRKMLGNIRFIGELFKLEMLKERVLHICIQQLLGDLKHVDPD 337
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: C1MK47_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MK47_MICPC)

HSP 1 Score: 53.9 bits (128), Expect = 2.840e-7
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 KRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            +RRMLGNI+FIGEL+KK ML E +M TC+  LL  TK  NPD
Sbjct:  142 RRRMLGNIRFIGELFKKQMLTERIMHTCIMKLLGETK--NPD 181
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: A0A067C5R3_SAPPC (MI domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5R3_SAPPC)

HSP 1 Score: 53.9 bits (128), Expect = 3.400e-7
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    4 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLN 108
            TKRRMLGNI+FIGELYKK ML+E +M  CV  +LN
Sbjct:  857 TKRRMLGNIRFIGELYKKGMLQERIMHECVAKMLN 891
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: C1E1G6_MICCC (MIF4G domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E1G6_MICCC)

HSP 1 Score: 53.5 bits (127), Expect = 4.010e-7
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            Q +RRMLGNI+FIGEL+KK ML   +M TC+  LLN  K  NPD
Sbjct:  146 QARRRMLGNIRFIGELFKKEMLTARIMHTCIMKLLNEKK--NPD 187
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BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Match: A0A2G5CMN7_AQUCA (MI domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CMN7_AQUCA)

HSP 1 Score: 53.5 bits (127), Expect = 4.660e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD 132
            Q +RRMLGNI+ IGELYKK ML E +M  C++ LL   +  NPD
Sbjct: 1367 QARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQHQNQNPD 1410
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13374.2603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBU9_9PHAE1.480e-1693.02MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G664_ECTSI3.360e-1590.70Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A1V9Y791_9STRA2.780e-870.27Eukaryotic translation initiation factor 4 gamma n... [more]
A0A1V9YEM4_9STRA2.780e-862.79Eukaryotic translation initiation factor 4 gamma n... [more]
UPI000900CF5C7.110e-856.82eukaryotic translation initiation factor 4G-like i... [more]
A0A0D2WVB2_CAPO32.490e-759.52Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
C1MK47_MICPC2.840e-764.29Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A067C5R3_SAPPC3.400e-771.43MI domain-containing protein n=2 Tax=Saprolegnia T... [more]
C1E1G6_MICCC4.010e-761.36MIF4G domain-containing protein (Fragment) n=1 Tax... [more]
A0A2G5CMN7_AQUCA4.660e-756.82MI domain-containing protein n=1 Tax=Aquilegia coe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13374contigL-elsbetiae_contig13374:3974..4105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7G664
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016281,GO:0032991,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons1
Model size132
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.3971548-UTR-L-elsbetiae_contig13374:3973..39881622815510.3971548-UTR-L-elsbetiae_contig13374:3973..3988Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13374 3974..3988 +
1691682933.8696256-UTR-L-elsbetiae_contig13374:3973..39881691682933.8696256-UTR-L-elsbetiae_contig13374:3973..3988Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13374 3974..3988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.4126925-CDS-L-elsbetiae_contig13374:3988..41051622815510.4126925-CDS-L-elsbetiae_contig13374:3988..4105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13374 3989..4105 +
1691682933.8828514-CDS-L-elsbetiae_contig13374:3988..41051691682933.8828514-CDS-L-elsbetiae_contig13374:3988..4105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13374 3989..4105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13374.2603.1prot_L-elsbetiae_contig13374.2603.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13374 3989..4105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13374.2603.1

>prot_L-elsbetiae_contig13374.2603.1 ID=prot_L-elsbetiae_contig13374.2603.1|Name=mRNA_L-elsbetiae_contig13374.2603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
MLGNIQFIGELYKKSMLKENVMKTCVEHLLNATKEVNPD
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mRNA from alignment at L-elsbetiae_contig13374:3974..4105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13374.2603.1 ID=mRNA_L-elsbetiae_contig13374.2603.1|Name=mRNA_L-elsbetiae_contig13374.2603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=132bp|location=Sequence derived from alignment at L-elsbetiae_contig13374:3974..4105+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACGAAACGGCGCATGCTGGGGAACATCCAGTTCATCGGGGAGCTGTA
CAAGAAGAGCATGCTGAAGGAGAACGTGATGAAGACGTGCGTGGAGCACC
TCCTGAACGCCACCAAGGAGGTGAACCCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13374:3974..4105+

>mRNA_L-elsbetiae_contig13374.2603.1 ID=mRNA_L-elsbetiae_contig13374.2603.1|Name=mRNA_L-elsbetiae_contig13374.2603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig13374:3974..4105+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGGGAACATCCAGTTCATCGGGGAGCTGTACAAGAAGAGCATGCT
GAAGGAGAACGTGATGAAGACGTGCGTGGAGCACCTCCTGAACGCCACCA
AGGAGGTGAACCCCGACATGCTGGGGAACATCCAGTTCATCGGGGAGCTG
TACAAGAAGAGCATGCTGAAGGAGAACGTGATGAAGACGTGCGTGGAGCA
CCTCCTGAACGCCACCAAGGAGGTGAACCCCGAC
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