mRNA_L-elsbetiae_contig1337.2600.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1337.2600.1
Unique NamemRNA_L-elsbetiae_contig1337.2600.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1337.2600.1 vs. uniprot
Match: D7G0C9_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C9_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.050e-34
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:   14 EGEGKEGISCPVSIIYGSPDYDWMPHRHGVALAESLTRQGVKANVYSVPEAGHTLITDNPEGFTRIFLEAYVNAGV 241
            E EGK GISCPVSIIYGSPD+DWMPHRHGVALAE+LTRQGV A VYSVPEAGHTLI DNPE FTRIFLEAY +AGV
Sbjct:  465 EEEGK-GISCPVSIIYGSPDHDWMPHRHGVALAENLTRQGVTAKVYSVPEAGHTLIIDNPEDFTRIFLEAYFDAGV 539
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BLAST of mRNA_L-elsbetiae_contig1337.2600.1 vs. uniprot
Match: A0A662X0P1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0P1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.360e-7
Identity = 22/67 (32.84%), Postives = 40/67 (59.70%), Query Frame = 2 
Query:   29 EGISCPVSIIYGSPDYDWMPHRHGVALAESLTRQGVKANVYSVPEAGHTLITDNPEGFTRIFLEAYV 229
            E +  P++ IYG  D DWM +R+G+ + +   R+G   ++  VP AGH +  +NP+GF ++ ++   
Sbjct:  238 ENVKMPLTFIYG--DRDWMDYRNGLEIVQRFKREGRATDLIRVPNAGHQMFLENPDGFNQVLVDCLT 302
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1337.2600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0C9_ECTSI1.050e-3486.84AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A662X0P1_9STRA3.360e-732.84Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1337contigL-elsbetiae_contig1337:7128..10371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog2880.D7G0C9
Preferred nameABHD5
KEGG rclassRC00037,RC00039,RC00094
KEGG koko:K13535,ko:K13698,ko:K13699
KEGG ReactionR09038,R09381
KEGG Pathwayko00564,ko04923,map00564,map04923
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004301,GO:0004620,GO:0004622,GO:0004623,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006066,GO:0006576,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009308,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0010896,GO:0010898,GO:0012505,GO:0016020,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0016801,GO:0016803,GO:0019216,GO:0019222,GO:0019637,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0032879,GO:0034308,GO:0034641,GO:0036152,GO:0042171,GO:0042175,GO:0042439,GO:0042579,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044093,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045834,GO:0046470,GO:0046473,GO:0046474,GO:0046486,GO:0048518,GO:0048519,GO:0048522,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050994,GO:0050996,GO:0051004,GO:0051006,GO:0051336,GO:0051345,GO:0052689,GO:0055081,GO:0055088,GO:0055089,GO:0055090,GO:0055091,GO:0060191,GO:0060193,GO:0061365,GO:0065007,GO:0065008,GO:0065009,GO:0070291,GO:0070328,GO:0071617,GO:0071704,GO:0080090,GO:0090207,GO:0090208,GO:0090407,GO:0097164,GO:0098827,GO:1901564,GO:1901576,GO:1901615,GO:1905952,GO:1905953
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0596@1,KOG4409@2759
EC2.3.1.51
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01004
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-02_000920.1
Exons3
Model size705
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1337.2600.1prot_L-elsbetiae_contig1337.2600.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1337 7589..10289 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.1724343-UTR-L-elsbetiae_contig1337:7127..75881622815510.1724343-UTR-L-elsbetiae_contig1337:7127..7588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 7128..7588 -
1691682933.721952-UTR-L-elsbetiae_contig1337:7127..75881691682933.721952-UTR-L-elsbetiae_contig1337:7127..7588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 7128..7588 -
1622815510.2203572-UTR-L-elsbetiae_contig1337:10289..103711622815510.2203572-UTR-L-elsbetiae_contig1337:10289..10371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 10290..10371 -
1691682933.7626007-UTR-L-elsbetiae_contig1337:10289..103711691682933.7626007-UTR-L-elsbetiae_contig1337:10289..10371Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1337 10290..10371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.1872997-CDS-L-elsbetiae_contig1337:7588..76571622815510.1872997-CDS-L-elsbetiae_contig1337:7588..7657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 7589..7657 -
1691682933.7340753-CDS-L-elsbetiae_contig1337:7588..76571691682933.7340753-CDS-L-elsbetiae_contig1337:7588..7657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 7589..7657 -
1622815510.1972136-CDS-L-elsbetiae_contig1337:8557..86391622815510.1972136-CDS-L-elsbetiae_contig1337:8557..8639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 8558..8639 -
1691682933.7445734-CDS-L-elsbetiae_contig1337:8557..86391691682933.7445734-CDS-L-elsbetiae_contig1337:8557..8639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 8558..8639 -
1622815510.2101927-CDS-L-elsbetiae_contig1337:10278..102891622815510.2101927-CDS-L-elsbetiae_contig1337:10278..10289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 10279..10289 -
1691682933.754177-CDS-L-elsbetiae_contig1337:10278..102891691682933.754177-CDS-L-elsbetiae_contig1337:10278..10289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1337 10279..10289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1337.2600.1

>prot_L-elsbetiae_contig1337.2600.1 ID=prot_L-elsbetiae_contig1337.2600.1|Name=mRNA_L-elsbetiae_contig1337.2600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
MPHRHGVALAESLTRQGVKANVYSVPEAGHTLITDNPEGFTRIFLEAYVN
AGV*
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mRNA from alignment at L-elsbetiae_contig1337:7128..10371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1337.2600.1 ID=mRNA_L-elsbetiae_contig1337.2600.1|Name=mRNA_L-elsbetiae_contig1337.2600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3244bp|location=Sequence derived from alignment at L-elsbetiae_contig1337:7128..10371- (Laminarionema elsbetiae ELsaHSoW15)
AGTCGGTATCAACGAGGGCGAGGGGAAGGAGGGGATTTCGTGCCCGGTGT
CGATCATCTACGGGTCCCCCGACTATGACTGGATGCCGCACAGGTGTGAC
TTTTCCCTGCGCTGTTTAGTTTAGATGACGTTTTATTTTCAACTCAAAAC
ATCGGCGATCTTCGTCCTTTCCTGGGGACAAGTCGCCCCAGGGGGACTGT
TGTTGTACAGAACGCGCCACCGCTTGAGAGCCTCCTACCGTAGGTGACAC
AAGATACCACACCCCCTGGACATATTTTCAAAGCTCGATTCCTCCATAGC
AAGAAGAGTGGCAGTGTCGAAAGGTGTGGCGTTGGAAAGATCTAGTCCAG
GGCTGTCCGAAAATGTGTTGTTTGGAGCTGGCAGGCACCTTCTTCGTTAC
GGAGTAATGGAGCTCTAAAAATTCGATCCAGGGGGTGTGGTATCTTGTGT
CACCTTCGGTATTTGGGACCGAGGCTGGGGTACTTATTTCTCTGCGGGGG
AGCCATTGCTCCATATATTGCCTTTCTTATAGGTTTTAGTGTAGAGGCTC
TTACCCCGGGCATCTCAAATGTGGGCAAGTTCTTGAGACTATTTTGTTTA
TTTTCAACCTGGATTTCTTATCTCCCAAGTTCATAAAGTGGTGGCGCCTT
CTGTAGACGTATGTATGTACCGTAGGTGACATAAGATAAGACACCCCTGG
ACCGATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGGGCGTCAGTCCCG
AAAAGGGCGGCGTTGGAAAGATCTCGTCGAGAGCTGTCCGAAAATGTTGC
GTTTTAAGGTTAGAATCGTATTCGTTGCGGAGTAACTAAGCTTTCAAAAT
CGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGTACATGACCCTCTT
TTCCCTAACGGCCCAAGAATACAATAGACAGCAGTGTGTAGGTAGGTAAT
ATAAACCCGCATTGTTTTTGTTCTAGTGGTTCGTTTTTTGGCTGGCTTCT
TGAAAGGAATGTATCGATCGAAGCGACCGCCCTCTTGGCTGGACGACTAC
TGCTGCTGTTGGCGATACGCCAGTATGTATGTATCTGCTGGTGGAAGACA
ATTTTTTTTTTTTTTGAGGCAGCGACGGGGGAATATACACGCAGATTAAA
CAACCCCGAACATGCAGGTTTACATTTTCCAAGCTGTTGTGTGTGATACG
CGCACCTGACTACTGCGCATCCCGCTCTCTCGTCCACAGGCACGCACAGC
ATTATAACCCACGGGCTCCTCCCATGACGTGTGTGTGTGTGTGTGTGTGT
GTGTACGTTTGGAGCGTTTTTTTGGCCTTTTAGTCACCGGGAAATGACCG
TAAATGAGCCACCGGCCGTTTCTCCACACTGCAGTGGCCAATTTGCGTGA
TTGCTTTTCCTATAGATAACCACAAGCTTACCGAACAGTTTGCATACCGT
AGGTGACACAAGATACCACACCCCCTGGGCCGAATTTTAGAGCTCCATTA
CTCCGTAACGAAGAAGGTGCCAGCACCAAACGGCATATTTTCGGGCAGCT
CTCGCCTAGATCTTTCCAACGCACCCCCTTTCGGCATTGACACTCTTCTT
GCTGGAGAGGAATCGAGCTTTGAAAATCTGTCCAGTGGGTGTGGTATCTT
GTGTCACCTACGGTATACACACTTGGATCATCTCGCAACTTTTCCTTATG
TATCGACCTGACGTTCTTGCTCTTTCGTGCAGGCACGGCGTAGCCTTAGC
AGAAAGCTTGACAAGGCAGGGCGTGAAGGCCAACGTCTACAGCGTGCCGG
AAGCGGGCCACACGGTACGTTTTAACCCCCTGACGACGCCAACACTTTTC
TATTTTTTCCAGAGCTGTGATTGGATCTTACTCACAGTCGCCTGTGACTG
ATCCCAACTCTAATAAAATCCCTATTGAATTACCCCAAAACCATCTGGGG
CCATTCAATAGGGATTCCAGAGAAGGGATTGCGATTGGATCTTATTCACG
TAAGTCGCCTGTGACTGATCCCAACTCTAAAATCCCTGTTGAATGACCCC
AAAACCATCTGGGACCATTCAATAGGGATTCCAGAGAAGGAATTGGGGTC
GCGTGGTGAAAGGGGTTCGAAAAGTTAAAGTGTGGCGTATCACTTGGGGC
CAAAAAGTGGCCCCATACGCCTTGTGGCCGGCCCTAAGAGGGTCAATTAA
GGGAAGAAACGACAGCCAAAAGACGAGAGCCATCCGGTGTTCGAAGTGCG
CGGAAGCACACTTAATATTTTGCCGCTGTGATCGGAAGTACATACATACG
TGTACTGGACCTTTTTTTATTTTCGGCGAAACGAGCAGCTACACCTTTCC
CGGAATCGATCTTGCGGAGCCCTGCCCCCGTCGAGTTATGTATGTATGTA
TGTATGGTAGTTTTTGCGCGTTTCCAACACCCGCTCTTTTTGTGCTCTCC
TCTTTCCTCTTTTTTTTTTATCGTTGAAACCGTTTTTTTTCTTGAATGGA
CGAGCACTGGCATTGGTCAATGTGTACGTACGTTCGGCAGTTTGGCATCT
GCTGCGGTCCGTACGCTGCATGCTGGACTTGCGCACCCCAGCCGGTGCGC
GCCTTTGCCTTTTTAACCGCTACATAACGTCTATTCCATCCCCCCCAACC
GCCGCCCCTGCCCCCCCCCCTGTCGATCATGTTTCCCATGTACACATGTT
GGACATAAATACAGCTGATCACCGACAACCCTGAGGGCTTCACAAGAATA
TTCCTGGAAGCCTACGTCAACGCGGGGGTATAGCGCGGACAAGATTAGCG
AGCGGCATGGGGTGTGGGAAGGGACGAACGCCCAACCTCTTTCTACCGCG
GCCGTCATTTTGCTCTCTGATGCACGGCTTTACGTTTATGTAGGACGTTT
TGTTGTGTTGTGTGTGTTCTGTTGTTTTGGATCACAGCAGGTGTATTTTT
TTCCGTGCCTGTGACCGTGTACGTGTTTTTTTTGACACGCTGAGTGACGT
GGCCCCCACCTCGGTGCGTGTCTGCTGGAGTGCCCATTCATCGCTGGTGC
TTTCGCTTATATTTGTTTCGGTTTCACGGTGTGGCTTTTGGCATACATAT
ATCTCCGTATTTTTGTTTTTCCGTTTCGTGGTTCTGAGACGTGCTTTTCA
CCCGGCGGCGGGACAATTGTGTCGAAAAATCTACCCTTGAGTCAATGTGG
GCATGTGGATCTACGCAGCCTGCGCAGTTTTGTTGCTACATACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1337:7128..10371-

>mRNA_L-elsbetiae_contig1337.2600.1 ID=mRNA_L-elsbetiae_contig1337.2600.1|Name=mRNA_L-elsbetiae_contig1337.2600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig1337:7128..10371- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCACAGATGCCGCACAGGCACGGCGTAGCCTTAGCAGAAAGCTTG
ACAAGGCAGGGCGTGAAGGCCAACGTCTACAGCGTGCCGGAAGCGGGCCA
CACGGCACGGCGTAGCCTTAGCAGAAAGCTTGACAAGGCAGGGCGTGAAG
GCCAACGTCTACAGCGTGCCGGAAGCGGGCCACACGCTGATCACCGACAA
CCCTGAGGGCTTCACAAGAATATTCCTGGAAGCCTACGTCAACGCGGGGG
TATAGCTGATCACCGACAACCCTGAGGGCTTCACAAGAATATTCCTGGAA
GCCTACGTCAACGCGGGGGTATAG
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