mRNA_L-elsbetiae_contig13358.2595.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13358.2595.1
Unique NamemRNA_L-elsbetiae_contig13358.2595.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13358.2595.1 vs. uniprot
Match: D7FXL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL1_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.420e-73
Identity = 116/131 (88.55%), Postives = 123/131 (93.89%), Query Frame = 2 
Query:  116 AGVAPTAVPTKRTVRELLETRNTASKMEIGQGVFLQADVTGAELVVIRGSFEGKVTAQCVDIEQGAEVKGTIECEAARVNGKFDGVFISSHSLHLASHANVSGRIIYRRLKVAKGAQLYGYSEYRSPVLSK 508
            AGVA   +PTKRTVR+LLETRNT +KMEIGQGV L ADVTGAELVVIRG FEGKVTAQC+DIEQGAEV+GTIECEAARVNGKFDGVF+SSHSLHLASHANVSGRIIYRRLKVAKGAQLYG SEYRSPVL+K
Sbjct:    9 AGVAAPTLPTKRTVRQLLETRNTLNKMEIGQGVLLTADVTGAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGLSEYRSPVLAK 139
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BLAST of mRNA_L-elsbetiae_contig13358.2595.1 vs. uniprot
Match: A0A1L3J6P3_9FLAO (Uncharacterized protein n=1 Tax=Gramella salexigens TaxID=1913577 RepID=A0A1L3J6P3_9FLAO)

HSP 1 Score: 58.2 bits (139), Expect = 3.290e-7
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 2 
Query:  200 IGQGVFLQADVTGAELVVIRGSFEGKV-TAQCVDIEQGAEVKGTIECEAARVNGKFDGVFISSHSLHLASHANVSGRIIYRRLKVAKGA 463
            I  G  +  +++G     I G+ EG + T   V I +G  VKGT+EC+ A + GKF+G      +L L + AN+ G +I  +L V  GA
Sbjct:   20 IAAGTLITGEISGKGCFRIEGTLEGSLKTPGKVVISEGGMVKGTLECDNADIEGKFNGKLFVKDTLSLRAPANIEGEVIAGKLAVEPGA 108
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BLAST of mRNA_L-elsbetiae_contig13358.2595.1 vs. uniprot
Match: UPI001F2A341E (polymer-forming cytoskeletal protein n=1 Tax=Aequorivita sp. F64183 TaxID=2874476 RepID=UPI001F2A341E)

HSP 1 Score: 57.4 bits (137), Expect = 1.000e-6
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 2 
Query:  140 PTKRTVRELLETRNTASKMEIGQGVFLQADVTGAELVVIRGSFEGKV-TAQCVDIEQGAEVKGTIECEAARVNGKFDGVFISSHSLHLASHANVSGRIIYRRLKVAKGAQL 469
            P K+  +  +E     ++  I +G  L+ D++ +    I GS EG V T   V + +  E+KGT+ CE A + GKF+G    + +L L S A V G I+  +L V  GA L
Sbjct:    3 PEKKAKKNNVEPSTAQNR--ISEGTTLKGDISSSGFFRIDGSIEGNVNTPSKVVLGKTGEIKGTLSCENADLEGKFEGSLQVTGTLTLRSTALVEGEIVVGKLSVEPGAVL 111
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BLAST of mRNA_L-elsbetiae_contig13358.2595.1 vs. uniprot
Match: UPI001F4DE4F3 (polymer-forming cytoskeletal protein n=2 Tax=Gramella TaxID=292691 RepID=UPI001F4DE4F3)

HSP 1 Score: 54.7 bits (130), Expect = 5.930e-6
Identity = 30/89 (33.71%), Postives = 45/89 (50.56%), Query Frame = 2 
Query:  200 IGQGVFLQADVTGAELVVIRGSFEGKV-TAQCVDIEQGAEVKGTIECEAARVNGKFDGVFISSHSLHLASHANVSGRIIYRRLKVAKGA 463
            I  G  +  D+ G     + G+ EG + T   V I +G  + GT+ECE A + GKF G  +    L L + AN+ G ++  +L V  GA
Sbjct:   20 IAAGTLITGDIQGKGCFRVEGTLEGTLKTPGKVVISEGGLINGTLECENADIEGKFQGKLLIKGILTLRNTANIEGEVVTGKLAVEPGA 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13358.2595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXL1_ECTSI1.420e-7388.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1L3J6P3_9FLAO3.290e-735.96Uncharacterized protein n=1 Tax=Gramella salexigen... [more]
UPI001F2A341E1.000e-634.23polymer-forming cytoskeletal protein n=1 Tax=Aequo... [more]
UPI001F4DE4F35.930e-633.71polymer-forming cytoskeletal protein n=2 Tax=Grame... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13358contigL-elsbetiae_contig13358:897..4996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1e-06
Seed eggNOG ortholog1144342.PMI40_04184
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integral membrane protein CcmA involved in cell shape determination
EggNOG OGs1N26P@1224,2VSIS@28216,474FV@75682,COG1664@1,COG1664@2
COG Functional cat.M
Best tax levelOxalobacteraceae
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-28_002120.1
Exons5
Model size748
Cds size432
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.5995953-UTR-L-elsbetiae_contig13358:896..11271622815509.5995953-UTR-L-elsbetiae_contig13358:896..1127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13358 897..1127 -
1691682933.3409958-UTR-L-elsbetiae_contig13358:896..11271691682933.3409958-UTR-L-elsbetiae_contig13358:896..1127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13358 897..1127 -
1622815509.6681771-UTR-L-elsbetiae_contig13358:4053..40711622815509.6681771-UTR-L-elsbetiae_contig13358:4053..4071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13358 4054..4071 -
1691682933.4140716-UTR-L-elsbetiae_contig13358:4053..40711691682933.4140716-UTR-L-elsbetiae_contig13358:4053..4071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13358 4054..4071 -
1622815509.6787236-UTR-L-elsbetiae_contig13358:4929..49961622815509.6787236-UTR-L-elsbetiae_contig13358:4929..4996Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13358 4930..4996 -
1691682933.424076-UTR-L-elsbetiae_contig13358:4929..49961691682933.424076-UTR-L-elsbetiae_contig13358:4929..4996Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13358 4930..4996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.6136878-CDS-L-elsbetiae_contig13358:1127..12471622815509.6136878-CDS-L-elsbetiae_contig13358:1127..1247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 1128..1247 -
1691682933.3597891-CDS-L-elsbetiae_contig13358:1127..12471691682933.3597891-CDS-L-elsbetiae_contig13358:1127..1247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 1128..1247 -
1622815509.6254003-CDS-L-elsbetiae_contig13358:1828..19181622815509.6254003-CDS-L-elsbetiae_contig13358:1828..1918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 1829..1918 -
1691682933.3711665-CDS-L-elsbetiae_contig13358:1828..19181691682933.3711665-CDS-L-elsbetiae_contig13358:1828..1918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 1829..1918 -
1622815509.64314-CDS-L-elsbetiae_contig13358:2893..29651622815509.64314-CDS-L-elsbetiae_contig13358:2893..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 2894..2965 -
1691682933.3932114-CDS-L-elsbetiae_contig13358:2893..29651691682933.3932114-CDS-L-elsbetiae_contig13358:2893..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 2894..2965 -
1622815509.6561193-CDS-L-elsbetiae_contig13358:3903..40531622815509.6561193-CDS-L-elsbetiae_contig13358:3903..4053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 3904..4053 -
1691682933.4048676-CDS-L-elsbetiae_contig13358:3903..40531691682933.4048676-CDS-L-elsbetiae_contig13358:3903..4053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13358 3904..4053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13358.2595.1prot_L-elsbetiae_contig13358.2595.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13358 1128..4053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13358.2595.1

>prot_L-elsbetiae_contig13358.2595.1 ID=prot_L-elsbetiae_contig13358.2595.1|Name=mRNA_L-elsbetiae_contig13358.2595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MAPPPPPPPPAGVAPTAVPTKRTVRELLETRNTASKMEIGQGVFLQADVT
GAELVVIRGSFEGKVTAQCVDIEQGAEVKGTIECEAARVNGKFDGVFISS
HSLHLASHANVSGRIIYRRLKVAKGAQLYGYSEYRSPVLSKKS*
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mRNA from alignment at L-elsbetiae_contig13358:897..4996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13358.2595.1 ID=mRNA_L-elsbetiae_contig13358.2595.1|Name=mRNA_L-elsbetiae_contig13358.2595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4100bp|location=Sequence derived from alignment at L-elsbetiae_contig13358:897..4996- (Laminarionema elsbetiae ELsaHSoW15)
GGCTTTCGAGGCCAACGGCAGTAGCTCGGACATCCCCCGATCAGAGAATT
CCTCGATTGGCGACAACGTGAGCTTTTGTTTTTCGTCCTCCTTGGGGTTT
TTTTCTCTCAGAGTGCGTGTTGTTGCTGTTGTTGTTGTTGTTTACCCGTT
GTCGCCGGCCGGCGTGCGGCCTAACTACTGGTTATGTCGCACGAAACGCC
ACATAGGAGCGTGCGGCCAAACTACTGGTTATGTCGCACGAAACGCCACA
TAGGAGCGTGCGGCCTCACTACTGGTTCTATCGCACGAAACGCCACATAG
AGCGTGCGGCCGAACTACTGGTTCTGTCGCACGAAACGCCACATCGGAGC
GTGCGGCCTCACTACTGGTTATGTCGCCCGAAACGCCACATAGGAGCGAC
CAGTTTCCTGCGACTGCAGCAGTAACGCACGCGCTGTTGCGCTCGTTGTT
TCTTCTGCATCCGATGCCGCCCGAAACCTCGAACCTTCTCTTATGCTATT
GTAGCGAGCTCGCTCCGGGAGAACGAATGAACGCATCAATATTATCTACG
TAGGTAACATCATGGTATCTAAATGTCCTTCCGACGCGGCTTTAAGTCCG
ACCTGTTAAAAAAAAAAAAAACGCGTCTGAGGGAGGACTGACTAACTGGT
GTAGACTTCTTTCGGCGGAGCAAACGCGTAGATATATGTATGTATCACAT
GATTTTGCCCAACACAGTCGGTGGTTTTTCGGCCGCTGCTCAATCGACGG
AGAGTTAGTTTCTCGTGCAGTTGACACGTTCGTTTTCACCCCGTCACGCG
TGAAGAACGGTAGAAATGTAGACCACACTGAACCGCCGCCCGCTCCCTGC
CCCCCCTCCCCTCCCCGCGCGCCGTTAACTCTAACCCGCATCTTCTTCGA
CCCCACACGCTTCGAATGAAAGCAGAACTCTGCGGCGGCCGTCATGGCCC
CACCGCCGCCGCCGCCGCCGCCGGCTGGAGTGGCCCCCACCGCTGTCCCG
ACAAAGCGGACGGTGCGGGAGCTGCTGGAGACGAGAAACACGGCGAGCAA
GATGGAGATCGGGCAGGGGGTTTTCCTTCAGGCTGATGTCACGGTGCGTC
GAGAGAGAGAGAGAGGGCAGGGGTTACACATGCCGGCGGCGCCGCGGCGC
GTGGTTGTTGCTCATATGCATACGTGGAGTCGCATTGGGATGGTATCCCG
TCATAGGTGGGATGGAAACATGGGGATGGGATGGGGTGGCGCGTCGAGAG
AGAGGGCGGGGGGTACGCATGCCGGCGGCGCCGCGGCGCGTGGTTGTTGC
TTACATGCATACGTGGAGTGGCATTGGGATGGTATCCCGTCACAGATGGG
ATGGGAACATGGGGATGGGATGGGGTGGCGCGTCGAGAGAGAGGGTGGGG
GGTACACATGCCGGCGGCGCCGCGGCGCGTGGTTGTTGCTTGTATGCATA
CGTGGAGTGGCATTGGGATGGTATCCCGTCACAGATGGGATGGGAATATG
GGATGGGATGGGGTGGAAGGCGCGATATTGATTGTCCCAACATGCATCAC
ATTTCTACACACACATGCGTGGAGTTGTTTTGGGAAAAGTATTCCATCAC
AGATGGGATGGGATGGGATGGAAGGCGCGATATTGATTGTCCCAACATGC
ATTCCCTTCCCACCACCATCACTTGTTGTGTTGTTCTCCCCGTCCTGTGC
GTAACATGTATGTAGGCTGTGCAGGCTGTAAATAGGCTGTTTATGCGCCC
CCCCCCCCACTATTTTCTTGTTCTGCTGCGTGCCCCCTTGGACCTTTCTT
TCACTCTTGCCCTCTACGAGTGGGCTCTTTACTGAGTGAGTTTGCTTTCT
GCATGTCTCCGGGCCGCAGCTATCTTCCCTCCCTCTTATCCCTGTCGCCT
CTCTCTCTCTCTCTCTATCTATCTGTCTCTCTCTCTCTCCCTCTCCCTCT
CCAATCCCCGTCCTCCCTCTCTGGCTAACTGCTCGGTGTGCTTTTTGGCC
GACGTTGCAATCGTCCGCTGCGGTGTTGCAGGGAGCTGAGTTGGTGGTGA
TCAGGGGCTCTTTCGAGGGGAAGGTGACGGCACAGTGCGTCGACATTGAG
CAGGTACGTAGCGCTGCTGTGGTGGGTTGGTTCAATCGGATTTGCAATAC
GTGTAGAGGCGTGTTTTTTGTTTCGAGGGGAAGGTGGCGGCGCAGTAGTT
AGTTTTGAGCAGGTGCGTAGCGCTGCTGTGGCGGGTTACTTCGGATTTGC
AATACCGTAATCATGCGGGTTATCGCACCCCCGTGTTAGCGTTTTTCTAT
GGGGTATTACACGTTTCGAAAACCACCCTTTTCGGCACACCCTTTTCGGC
AGTGGCTCCTGGTTGTGGAGAAATACCCTATAGAAAAACGCTAACACGGG
GGTGCGATAACCCGCATGATTACGGTACATGTAAAGGCTTGTTTTTCTGT
TTCGAGGGGAAGGCGACGGCGCAGTTAGTGCATCGATGTTGCTGAGCAGG
TACGTACGCTGCTGTGTGTGTTGTTTACTTCGGGTTTGTATCAAAAAAGG
CGTGTTTGCAATATATGTGAAGGCGTGTTTTTCTTTCGGCATCACCCACC
AACTTGCTCACTCACCGCCATCGCCACTGCCACAAGCAGCGCCCATCACG
AGCAACAATGGCAGCAAGATTCGCGACAGCTACAGTAGTAGTAGCGGCAG
CGGCGGCAGTTGTATTGAGCAGCCAACAGTGACCCCCCCCCCCGAAGTTT
AGTGTGGGGATACGAGGCCCCCTTTGGTGCTCCGTCACTGAAATATTGCT
AGGGGCGCCGACTCCATAGGCCTCCCGCAGCAGAGCCCCCAATTCTGCTG
CTGGGGATTTTTCACTCTACTTTTCTTAGACAAATACCCCCCCCCCCCGC
TGCCCCCACAGCTCTTCTCGAGAAATGGGGGCTGTTTGATTGCAGGAAGC
CTGTAGTGCTCCGTGACTACTGAAAGCTTTGTGGGGCTGCCGAGGCCCTG
TTTATGGCCTATGTAACGATTTTTATTGATGAGCGCCCCCTCTCCCCACC
GCTACGATCGCCTCCAATGACACGGCAGGGAGCCGAGGTAAAGGGTACGA
TTGAGTGCGAGGCCGCACGAGTCAACGGAAAGTTCGACGGAGTGTTCATC
TCGAGTCACTCCCTGCACGTGAGTTTTGTGTTTTATTTGTCCATCTGTCT
TCAGGTATCTTTTTAATTAATGTATACAAATGTCAGCAGTCTACATACAG
TACGTCCACTCTGTGAAAAAGTCGTTCCAGGGGTACTGTTGTAGGCATAC
TAACCCCCCTTTTCCCCGTCCAAGCTATACTCGCACAAAATCGGTAATCC
ATGTATACAGTTTGTTGGTGAAATTATTTTCTGTCCGTCTGTCTGTCTGT
CTGTCTGACTGGCTCGCTGTTTGTCTGACTGTCTCCCTTTCGTCTGGCTC
TCTCTTGCTGTCTGTCAGTCTCCTTCCTCTTCGTGTGTTTATTTTTGGAT
TGTGTGGTATCTAGTACTCGTTTTCCCTGCATCTCGGCTTCCCCTTTCCC
CGTCGGCCCTGTCGGCTGAATCCGTTAGTTAGATTGACGTGGAGACGCGC
GCCGTAGTGTAGAAACACGTCATAAGAGAGCGCACGCTTCCACGCTCCAC
GCTACTACTGTCTAACATCGCCCCCCCCCCCCCGTCTCTCCCCGCCACAC
CCACGGGGCGCCCCAATTTGTCGCATCCGTGTAAATAAATACACATCAGC
TTGCGTCCCACGCAAACGTGTCCGGGCGAATCATCTACCGCCGGTTGAAG
GTCGCAAAGGGCGCTCAACTCTACGGATACTCGGAGTACCGTTCGCCCGT
GCTCTCCAAGAAAAGTTGATTTTTTCAACAAACTTCTGTAGGCTTTTCCT
GCAGCAGGGCCCCCAATTCTGAAAGATTGGCTAATGGTAGGGGATTTTTC
ACTCTATTTCCAAGATAAATACCCCCACCCACTGCCCCCACAGCTTTATT
TGAGAACTGGGGGTTATCTGCAGGAACCCTATATATATATGTATACGTTT
CGGGGGATCCACGGTAGATGGGGAGGGGGAGGGGTGAAGATCGCGGGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13358:897..4996-

>mRNA_L-elsbetiae_contig13358.2595.1 ID=mRNA_L-elsbetiae_contig13358.2595.1|Name=mRNA_L-elsbetiae_contig13358.2595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig13358:897..4996- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCCACCGCCGCCGCCGCCGCCGCCGGCTGGAGTGGCCCCCACCGC
TGTCCCGACAAAGCGGACGGTGCGGGAGCTGCTGGAGACGAGAAACACGG
CGAGCAAGATGGAGATCGGGCAGGGGGTTTTCCTTCAGGCTGATGTCACG
ATGGCCCCACCGCCGCCGCCGCCGCCGCCGGCTGGAGTGGCCCCCACCGC
TGTCCCGACAAAGCGGACGGTGCGGGAGCTGCTGGAGACGAGAAACACGG
CGAGCAAGATGGAGATCGGGCAGGGGGTTTTCCTTCAGGCTGATGTCACG
GGAGCTGAGTTGGTGGTGATCAGGGGCTCTTTCGAGGGGAAGGTGACGGC
ACAGTGCGTCGACATTGAGCAGGGAGCTGAGTTGGTGGTGATCAGGGGCT
CTTTCGAGGGGAAGGTGACGGCACAGTGCGTCGACATTGAGCAGGGAGCC
GAGGTAAAGGGTACGATTGAGTGCGAGGCCGCACGAGTCAACGGAAAGTT
CGACGGAGTGTTCATCTCGAGTCACTCCCTGCACGGAGCCGAGGTAAAGG
GTACGATTGAGTGCGAGGCCGCACGAGTCAACGGAAAGTTCGACGGAGTG
TTCATCTCGAGTCACTCCCTGCACCTTGCGTCCCACGCAAACGTGTCCGG
GCGAATCATCTACCGCCGGTTGAAGGTCGCAAAGGGCGCTCAACTCTACG
GATACTCGGAGTACCGTTCGCCCGTGCTCTCCAAGAAAAGTTGACTTGCG
TCCCACGCAAACGTGTCCGGGCGAATCATCTACCGCCGGTTGAAGGTCGC
AAAGGGCGCTCAACTCTACGGATACTCGGAGTACCGTTCGCCCGTGCTCT
CCAAGAAAAGTTGA
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