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Homology
BLAST of mRNA_L-elsbetiae_contig13351.2592.1 vs. uniprot
Match: D7G4U3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U3_ECTSI) HSP 1 Score: 115 bits (287), Expect = 5.700e-29 Identity = 67/162 (41.36%), Postives = 81/162 (50.00%), Query Frame = 3
Query: 99 MGGTPSNARHKDLVAEIGRWPDFKERTCLTSSDVSSIAAAFRKASETSAGDSLLRTDFEQWLEMTDKPTPAQERLFEVFLVSHDDENICLFDFVVGLLNYCVDGKEHLSRLAFDVYDRHTTGTITEADLEGMLIDVWGANWEGEDLARGLLAERSGMDPMQP 584
MG TPSN R K+ VAEI WP F ER C+TSSDVS IA AFRKA+E+S G L R DFE WL+M KP P +ERLFEVF+++ ++ + + LARGLLAER G+DPMQP
Sbjct: 1 MGATPSNTRQKEFVAEIQGWPGFVERMCMTSSDVSGIATAFRKATESSEGKYLQRADFEHWLDMGSKPKPVEERLFEVFIINSGEQ-------------------------------------------------------QDDALARGLLAERVGVDPMQP 107
BLAST of mRNA_L-elsbetiae_contig13351.2592.1 vs. uniprot
Match: A0A6H5JUH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH1_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.410e-28 Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 3
Query: 99 MGGTPSNARHKDLVAEIGRWPDFKERTCLTSSDVSSIAAAFRKASETSAGDSLLRTDFEQWLEMTDKPTPAQERLFEVFLVSHDDENICLF 371
MG TPSN R K+ VAEI WP F ER C+TSSDVS IA AF KA+E+S G L R DFE WL+M KP P +ERLFEVF+V+ +++ + F
Sbjct: 1 MGATPSNTRQKEFVAEIEGWPGFVERMCMTSSDVSGIATAFVKATESSDGKYLQRADFEHWLDMGSKPKPVEERLFEVFIVNSEEQQVHQF 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-20_000320.2 |
| Exons | 5 |
| Model size | 585 |
| Cds size | 486 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815509.1911836-CDS-L-elsbetiae_contig13351:1113..1177 | 1622815509.1911836-CDS-L-elsbetiae_contig13351:1113..1177 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 1114..1177 - |
| 1691682933.151193-CDS-L-elsbetiae_contig13351:1113..1177 | 1691682933.151193-CDS-L-elsbetiae_contig13351:1113..1177 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 1114..1177 - |
| 1622815509.201304-CDS-L-elsbetiae_contig13351:2055..2216 | 1622815509.201304-CDS-L-elsbetiae_contig13351:2055..2216 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 2056..2216 - |
| 1691682933.1643891-CDS-L-elsbetiae_contig13351:2055..2216 | 1691682933.1643891-CDS-L-elsbetiae_contig13351:2055..2216 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 2056..2216 - |
| 1622815509.2144015-CDS-L-elsbetiae_contig13351:3364..3496 | 1622815509.2144015-CDS-L-elsbetiae_contig13351:3364..3496 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 3365..3496 - |
| 1691682933.1768384-CDS-L-elsbetiae_contig13351:3364..3496 | 1691682933.1768384-CDS-L-elsbetiae_contig13351:3364..3496 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 3365..3496 - |
| 1622815509.2241447-CDS-L-elsbetiae_contig13351:3932..4005 | 1622815509.2241447-CDS-L-elsbetiae_contig13351:3932..4005 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 3933..4005 - |
| 1691682933.1859646-CDS-L-elsbetiae_contig13351:3932..4005 | 1691682933.1859646-CDS-L-elsbetiae_contig13351:3932..4005 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 3933..4005 - |
| 1622815509.2388585-CDS-L-elsbetiae_contig13351:4326..4382 | 1622815509.2388585-CDS-L-elsbetiae_contig13351:4326..4382 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 4327..4382 - |
| 1691682933.1933951-CDS-L-elsbetiae_contig13351:4326..4382 | 1691682933.1933951-CDS-L-elsbetiae_contig13351:4326..4382 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13351 4327..4382 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815509.251202-UTR-L-elsbetiae_contig13351:4382..4480 | 1622815509.251202-UTR-L-elsbetiae_contig13351:4382..4480 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13351 4383..4480 - |
| 1691682933.200891-UTR-L-elsbetiae_contig13351:4382..4480 | 1691682933.200891-UTR-L-elsbetiae_contig13351:4382..4480 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13351 4383..4480 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13351.2592.1 >prot_L-elsbetiae_contig13351.2592.1 ID=prot_L-elsbetiae_contig13351.2592.1|Name=mRNA_L-elsbetiae_contig13351.2592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MGGTPSNARHKDLVAEIGRWPDFKERTCLTSSDVSSIAAAFRKASETSAG
DSLLRTDFEQWLEMTDKPTPAQERLFEVFLVSHDDENICLFDFVVGLLNY
CVDGKEHLSRLAFDVYDRHTTGTITEADLEGMLIDVWGANWEGEDLARGL
LAERSGMDPMQP back to topmRNA from alignment at L-elsbetiae_contig13351:1114..4480- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig13351.2592.1 ID=mRNA_L-elsbetiae_contig13351.2592.1|Name=mRNA_L-elsbetiae_contig13351.2592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3367bp|location=Sequence derived from alignment at L-elsbetiae_contig13351:1114..4480- (Laminarionema elsbetiae ELsaHSoW15)
ATTTTTGACCTTGAATCGCCGTGTGTTTCCCACCCCAAAAAGCCGGGTTT
GAACCTGATTCAGACAGTGCCCGGCGTGACGATCGTGATATTTTGTCGAT
GGGAGGCACCCCTAGCAATGCGCGGCACAAGGATCTCGTCGCCGAGATTG
GAAGGTGTGTGAGCCCGAGAATACGAGAGAGAACCATCGTATTTAGTCTA
TCTATGCAGAAAGATCTAAAGTCTACAGTACATACATACCACCATCGATA
CGGTACCACGTGCATTTGGAAAATGATCCCCGTTCGGCGTGTCTGGATAT
GCATCTCGTCTTGTTTTCTAAAGCGATTGTTTGCAGGAAACAAGCCGTAA
AACACACGCTTCCCTTGAAATTGTACAAAGTATGTGTAGATATATACGAA
GTATCTAGATAGGGTAATTGTGTGTGTACTCGGTCGTTCGTTTCAACACA
TGCACGATTCTTAAACACTACATAGGTGGCCTGATTTCAAAGAGAGAACC
TGCCTGACGTCATCGGACGTGTCCAGCATTGCCGCGGCATTTCGGAAGGT
AATTATTGCCTACCTGATGCGCTGTGCGTATCTACCTGATGTGGTGTACG
TTTCAGTGGGTACTGCGTTTGATCGCCAACGTTGTGGCTCTTGGTCGAGA
AAGAAGACGAGGTACCTTGCGGCGAACAAAGGCTGAGTCATGCGGGTTGC
AGCTCAGCCTATCTCTTTCAGATCAGAGCGTATCGTATAGAAGACGCATC
GTATACCTCGGGGTTTCATCCTCACGTGAATAAAAAGACCGAGCTGAAAC
CGGCATAAGAGTGGTGAAATATCGATACCACGGCGACGCGGCAGTACGTA
CGTAGCAAACATGTCGGGAGACCACAGCTCGTTTGTAGCGATTGAATAAA
GACCCTACCACGGTGCCCAGGGTGATTCTCAAAGGGTTTGGTGGCATGCA
TGGCGTGCACGGCTTGCTTTCAACAATCTCCCAGGCGAGCGAAACGAGCG
CGGGGGACAGTCTTCTGCGGACGGACTTTGAGCAATGGCTGGAGATGACA
GACAAGCCGACGCCTGCTCAGGAGCGCCTCTTCGAAGTCTTCCTTGTCAG
CCATGACGATGAAAACGTGAGTGTGTATCGTCTGAGAACTGCCTCTTGGA
AGCCTTCGTTGCTATACAGCCACGGCAACGGACGCGCACGTAGCGGCGCG
CCCGATACGATATCTTGAACCGCTGCCATCAGGGCGGCCGACTGCAATGG
CTAATTTCGTGGTGACCCTTGTGCAGCCAATGCGCGGACGATATTTTGGT
TGCTTCTGGGTAGACGGACTTCATTGATTTGTTTACCCTTGGATACAGCG
TTTCACACATCCAGTGTTATTGCGTTGGGTTTTTTGCTTCATGTGTTTTC
TTGCGTTGGTTCGCAGGTATTGCACAGAAAGCTCCGCAATAATGCCAACG
TTGAGGGTTTATTGAAGACCCCTCTCGTTGATACGGTTAATAGGAAGCGC
TTTTGCAAACTCTTGCACAAGCAAAAAGGGTCTAATTCGAAGCGTAACAA
TCAAATCACGTCGGTGCAAAAAGCAAAGCATTTACTGCATTTGTTGGCGG
GGTGACGTCTACATCATGTAGTAGAATAATCTGCCCGAAAGGGATTGGCG
GGAGCCTGCGGTGGACACAAGCCGGTCCGTACTCAAAGCTTGCTTTCGAG
GTGCATCTCGGACTTTTGCGTCCTCGTGGAACTTTTCCCCAGCAGACCAG
GTTGATTCTACGACTAGCAACTACCCCTGGCCAGTCGATAAGAGATTTTC
ATTGATTTTCAAGCGACCTGGACTGGCCGATCTCAAAAACAGGAGAATTC
TTCATTTTTCCGAGATATTCTCGTAGTATAAATATAGACTATATGTACCA
CCCCAAAACACCTTCTTGTACAGACCTGGAAAGAAACCGACGTTCGTCAG
CCGAGCTCCAGGGCAGTAGTCGAGTTATGTTTCGCGCGTGAGCTGCTGCT
ATAACAAACCAAGCGCTTGAAGCGTACTGGTAGAGGTGAGAACAAGCTGG
ATTGGTTTCACAGTATGTAGCGCTTGGTATATAGCCTCCTGTTTCGCGGC
TGGCTCGAGACGTGACGAGGGTCCCACACAGACAGCTGGTTTATCGTGCC
GTGTCAATGGGGGGTTTCGCAGGAGACGGAACGGGGCTACCGACGGACCT
CCCGGCGACGACTCAACTGCCTTGTCGTCGTAACCTATCTCTGCGTTTAT
TGGCGCGACTCCAGATCTGTCTGTTCGACTTCGTGGTGGGCTTGCTCAAC
TACTGCGTGGACGGCAAGGAGCACCTCTCGAGGCTGGCTTTCGACGTGTA
CGACCGGCATACCACGGGCACCATCACGGAGGCGGACCTCGAGGGAATGC
TGATCGATGTGTGGGGGGCAAACTGGTGAGATCGGCGCCGCCGCTACAGT
GCTTTTTTTTTCTTTTTTTTTCTTTTTTCTCTAAATATAGATACGTTCGT
GGGGGCTGTCTTTGTCGCTGTTGCTGATCTCCTTGTGGAGCCGGTGCTAC
ATACATACATACATATGCACTTTTCCAGCCACAGCGAGCATTGGACACAG
AAAAATTGAAACCCGTGAAGGGCCGACACCACTCGAAACCAGCATGCCGG
AGTTCAACCACCACTTGGCCATGGGCCGCACTGGGCTGAAAGACACTTTT
GAGCGGTTTTGGGGGGTGGGAAGGCGCGAGCAAGCGCGGTAAACCGTGAC
GTCTACGTTTGGACAGCCCGCCCAGATCCCCCGGGCAGCTGCTCTATCCG
TCCGTTGTTAACGCCTCTTGGCGGTTTTGGGAAATAACTAAACTCAGGAC
CCCACAGAAAGAACGACCGAAAGAAGACGCGGGACTTCCCGTGGTGATTT
AATTTTGCAGTTCAACGCACACGAGTGATGTATTATTGGCCCCGGCCGAG
TAGAAAAGCACCTACCGTGTGTACTTCGTATGCGGCACAGTATCTGAGTC
CAACAGCTCCCCTGCAGAGCCCCCGGTCAGGTCAACCAGCAAGTACTCTT
CTGGGGGGAAACCCCACCCCCTTTACGCCTGTCTACTTCGACCTCACCGT
CGACGAGGGAAAGGGAAGGCTGGATCCTTCTCGCGATTAAAATAGTAGGC
AAGCACCGCAGACGGGGCCTTGGGGAAAGGGGCCCTTCTGTGTGACCACG
GCTCGGTACTCTGGCAAGATGTTCTCGTGATAGGGAGCCCACATCGAGCT
CTGGAAATAAATATAAAGAAGAAAAAGCAAAATGTTGTTGCCTGTTGTGT
CAGGGAAGGAGAGGACCTCGCCAGAGGTCTGCTGGCGGAGCGGTCCGGGA
TGGACCCGATGCAGCCG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig13351:1114..4480- >mRNA_L-elsbetiae_contig13351.2592.1 ID=mRNA_L-elsbetiae_contig13351.2592.1|Name=mRNA_L-elsbetiae_contig13351.2592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig13351:1114..4480- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGGCACCCCTAGCAATGCGCGGCACAAGGATCTCGTCGCCGAGAT
TGGAAGATGGGAGGCACCCCTAGCAATGCGCGGCACAAGGATCTCGTCGC
CGAGATTGGAAGGTGGCCTGATTTCAAAGAGAGAACCTGCCTGACGTCAT
CGGACGTGTCCAGCATTGCCGCGGCATTTCGGAAGGTGGCCTGATTTCAA
AGAGAGAACCTGCCTGACGTCATCGGACGTGTCCAGCATTGCCGCGGCAT
TTCGGAAGGCGAGCGAAACGAGCGCGGGGGACAGTCTTCTGCGGACGGAC
TTTGAGCAATGGCTGGAGATGACAGACAAGCCGACGCCTGCTCAGGAGCG
CCTCTTCGAAGTCTTCCTTGTCAGCCATGACGATGAAAACGCGAGCGAAA
CGAGCGCGGGGGACAGTCTTCTGCGGACGGACTTTGAGCAATGGCTGGAG
ATGACAGACAAGCCGACGCCTGCTCAGGAGCGCCTCTTCGAAGTCTTCCT
TGTCAGCCATGACGATGAAAACATCTGTCTGTTCGACTTCGTGGTGGGCT
TGCTCAACTACTGCGTGGACGGCAAGGAGCACCTCTCGAGGCTGGCTTTC
GACGTGTACGACCGGCATACCACGGGCACCATCACGGAGGCGGACCTCGA
GGGAATGCTGATCGATGTGTGGGGGGCAAACTGATCTGTCTGTTCGACTT
CGTGGTGGGCTTGCTCAACTACTGCGTGGACGGCAAGGAGCACCTCTCGA
GGCTGGCTTTCGACGTGTACGACCGGCATACCACGGGCACCATCACGGAG
GCGGACCTCGAGGGAATGCTGATCGATGTGTGGGGGGCAAACTGGGAAGG
AGAGGACCTCGCCAGAGGTCTGCTGGCGGAGCGGTCCGGGATGGACCCGA
TGCAGCCGGGAAGGAGAGGACCTCGCCAGAGGTCTGCTGGCGGAGCGGTC
CGGGATGGACCCGATGCAGCCG back to top
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