mRNA_L-elsbetiae_contig13343.2587.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13343.2587.1
Unique NamemRNA_L-elsbetiae_contig13343.2587.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13343.2587.1 vs. uniprot
Match: A0A6H5L825_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L825_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 6.340e-84
Identity = 131/189 (69.31%), Postives = 142/189 (75.13%), Query Frame = 1 
Query:   10 HFVQGNTYYTDQELERAVEEYKTALKYDPLHADTMCNLGSALQDLGDYPLSRHYYSKXXXXXXXXXXXXXXXXXXXHDEDLETAMEHXQSAVEMDPSMADAWSNLGSAYHHEKELEDALGCYQEAIRLYETEEAYKGLPFTDDVLATLNYHTSVLLSKIPDGRCRPGGCTAQWMEHLRRCLRHDPEHAL 576
            HFVQ NTYYTDQELERAVEEYKTALK+DPLHADTMCNLGSALQDLGDYPLSRHYYSK                   HDED++TA+EHX                  SAYH E +LEDALGCYQEAIRLYETEEAY+GLPFTDDVLATLNYH S++L ++PDGRC  GGC +Q ME LRRCLRHDPEHAL
Sbjct:   36 HFVQANTYYTDQELERAVEEYKTALKFDPLHADTMCNLGSALQDLGDYPLSRHYYSKAVQANPYHAVAHFNLGLLLHDEDIDTAIEHXXXXXXXXXXXXXXXXXXXSAYHREDDLEDALGCYQEAIRLYETEEAYEGLPFTDDVLATLNYHVSIILGRLPDGRCLQGGCLSQRMEILRRCLRHDPEHAL 224
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BLAST of mRNA_L-elsbetiae_contig13343.2587.1 vs. uniprot
Match: A0A835YWA3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.590e-10
Identity = 62/228 (27.19%), Postives = 92/228 (40.35%), Query Frame = 1 
Query:   22 GNTYYTDQELERAVEEYKTALKYDPLHADTMCNLGSALQDLGDYPLSRHYYSKXXXXXXXXXXXXXXXXXXXHDEDLETAMEHXQSAVEMDPSMADAWSNL---------------------------------GSAYHHEKELEDALGCYQEAIRLYETE-EAYKGLPFTDD---------VLATLNYHTSVLLSKIPDGRCRPGGCTAQWMEHLRRCLRHDPEHAL 576
            GN  YT  +L  A+  YK AL++D  HAD++ NLGSALQDL          ++                       LE A++  ++AV  +P  A A  NL                                 G+AYH ++    A+  Y EA+ L+  + EA +  P   D          LA L+      + ++PD  C   GC A  +EHL   L++DP++ L
Sbjct:   16 GNDLYTAGDLPGAISVYKKALEHDETHADSLTNLGSALQDLAWQREEAGAQTESLRL-------------------LEEAVQAYRAAVAANPYHAMASYNLALLLHNDAPQEXXXXXXXXXXXXXXXXXXXXXLGAAYHAQQMYAQAVPHYLEAVELFTAQLEAERASPAAADDALIGQYTSYLAVLHARCGEAMVRMPDSECGDAGCVADAIEHLTMSLQYDPDNEL 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13343.2587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L825_9PHAE6.340e-8469.31Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A835YWA3_9STRA3.590e-1027.19S-adenosyl-L-methionine-dependent methyltransferas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13343contigL-elsbetiae_contig13343:581..4847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue3.2e-69
Seed eggNOG ortholog2880.D8LBV8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_003450.1
Exons6
Model size576
Cds size576
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13343.2587.1prot_L-elsbetiae_contig13343.2587.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13343 581..4847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.67105-CDS-L-elsbetiae_contig13343:580..6881622815508.67105-CDS-L-elsbetiae_contig13343:580..688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 581..688 -
1691682932.7693448-CDS-L-elsbetiae_contig13343:580..6881691682932.7693448-CDS-L-elsbetiae_contig13343:580..688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 581..688 -
1622815508.686249-CDS-L-elsbetiae_contig13343:1247..13441622815508.686249-CDS-L-elsbetiae_contig13343:1247..1344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 1248..1344 -
1691682932.7807364-CDS-L-elsbetiae_contig13343:1247..13441691682932.7807364-CDS-L-elsbetiae_contig13343:1247..1344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 1248..1344 -
1622815508.696555-CDS-L-elsbetiae_contig13343:2422..25171622815508.696555-CDS-L-elsbetiae_contig13343:2422..2517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 2423..2517 -
1691682932.792938-CDS-L-elsbetiae_contig13343:2422..25171691682932.792938-CDS-L-elsbetiae_contig13343:2422..2517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 2423..2517 -
1622815508.7063394-CDS-L-elsbetiae_contig13343:3211..33231622815508.7063394-CDS-L-elsbetiae_contig13343:3211..3323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 3212..3323 -
1691682932.807242-CDS-L-elsbetiae_contig13343:3211..33231691682932.807242-CDS-L-elsbetiae_contig13343:3211..3323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 3212..3323 -
1622815508.719801-CDS-L-elsbetiae_contig13343:3876..39841622815508.719801-CDS-L-elsbetiae_contig13343:3876..3984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 3877..3984 -
1691682932.8160977-CDS-L-elsbetiae_contig13343:3876..39841691682932.8160977-CDS-L-elsbetiae_contig13343:3876..3984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 3877..3984 -
1622815508.7296388-CDS-L-elsbetiae_contig13343:4791..48471622815508.7296388-CDS-L-elsbetiae_contig13343:4791..4847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 4792..4847 -
1691682932.8250394-CDS-L-elsbetiae_contig13343:4791..48471691682932.8250394-CDS-L-elsbetiae_contig13343:4791..4847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13343 4792..4847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13343.2587.1

>prot_L-elsbetiae_contig13343.2587.1 ID=prot_L-elsbetiae_contig13343.2587.1|Name=mRNA_L-elsbetiae_contig13343.2587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
MRRHFVQGNTYYTDQELERAVEEYKTALKYDPLHADTMCNLGSALQDLGD
YPLSRHYYSKAVKANPYHAVAHFNLGLLLHDEDLETAMEHYQSAVEMDPS
MADAWSNLGSAYHHEKELEDALGCYQEAIRLYETEEAYKGLPFTDDVLAT
LNYHTSVLLSKIPDGRCRPGGCTAQWMEHLRRCLRHDPEHAL
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mRNA from alignment at L-elsbetiae_contig13343:581..4847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13343.2587.1 ID=mRNA_L-elsbetiae_contig13343.2587.1|Name=mRNA_L-elsbetiae_contig13343.2587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4267bp|location=Sequence derived from alignment at L-elsbetiae_contig13343:581..4847- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAAGGCACTTCGTCCAGGGCAATACGTACTACACCGACCAGGAGCT
CGAGAGGTGAGTAGAAGAGAAAAACAACAGCATCATCAGTAGCAGGGATG
CCAGCATCGTAGGTAACTGTTTTTTCAGAGAGCTCGCGAGGTGAGAAGAG
GACACAAAACAACTGGTTTAGGGATGCCAGTACCATAGGCGACACAAGAT
ACCACACCCCTTGGGCATATTTTCAAAGCTCGATTCCTCCCCAGCAAGAA
GAGTGCCAGTGCCGAAAGGGGTGGCGTTGGAAAATATCTAGTCCAGGGCT
GTCCGAAAATGTGCCGTTTGGTGCCGGCACCCTCTTCGTTACGGAGTAAT
GGAGCTCTAAAGTCCGTCCAAGGGGTGTGGTATCTTGCGTCACCTACGGT
ATTGTAACTGAGAAGAAGAGAAAAGCAACAGCACCACCAGTTGTAGGGGT
GCCAGTAGTGTACTCCCTGTTTTTTCAGAGGGCTCTGGAGAGGGAAGAAG
CAGAGACAAACGACAGCATTGGTGGTGAAACATGCCAGTTACAGCAGGCG
AAGAAGAGACAAACAACAGCGGTACTGTTGTAGGATGGATGCCAGCAAGG
CCTGCTTTTTTCTTTCAGAGCGATTTCAGGAGTTATCGGCAGGTCAGGGT
AGCCCAGCCAGGCCGGCGGCCGGCAGCTGATCTCCATCCCGCTCGGTCGC
TCTCCGCGCAGCACGTGCACATTCCATTCCGCGCGGCCGCGCACACGTCC
CGCACAGCGGTAGCCCCGCAGCCATCCACAGCAGAAGCCAGGGACAAGGC
AACGCCCGCTGCTCTCTGAATCGCTCAGCAAACGCCTCCTCCACCATCCG
TCTCCGCTCGCAGGGCGGTCGAGGAGTACAAGACGGCTCTCAAGTACGAC
CCGCTGCACGCGGACACCATGTGCAACCTCGGCAGCGCCCTTCAGGACCT
GGGGGACTACCCCCTCTCGAGGTGCGTGCGTGCCTGCGTGCCTGCGCCGG
CGGCGCAGTATGTTCAGCCACGTTGCTTGGTCGCAGGCCTGTTGCTGTTG
ATTCCGCGGCACATGTGTGTAGGCCCCGCGTTGTCTCGAAAACAGCAGAA
CCGGGTTGTCGTGTGCGTCATGGCCGGTTTCGCGATCGCGTGCGGTCGAC
AGGCAAGCCCGCCGGGGAGCCATCTGCCCAACTGTTCTTGCGCTTTGATC
GATTTCCGACGTGATCTTGGTCGCCCCATATAGACAAGAGCATGTACGAG
CTGGTGCAAGTGTTGTTTGTGCCGGGTAGGTGTGGTTCCCAGGGGTGTGG
TGGCGAGGGTAAGCGCAGCTATCTCAGCAGAGGGGTTGGAAATATGGTGT
CACGACTGGAGCGAAGGAGGCAAGTGACCACGAGCGAGCTCTCTTTTTAA
GGTTACCATGCTATGGTCGGAGCTTCGCCATGAACACCTCACCGTCGCCA
TCCCGAAAGACCCGCACACCGCCTCTTGATGTTCTGATTAATTATGTTCC
ATGTATCGGTGCGCTTCTCTGCAGGCATTACTACTCAAAGGCCGTGAAGG
CCAACCCATACCACGCCGTGGCGCACTTCAACCTTGGACTGCTCCTACAC
GACGAGGATCTAGAGACGGCCATGGAGCACTACCAGGTAATCTACAAGTG
ACCACCTAGGGACGTACGTATGTCATGCGCCCCGAGCATGCTCACGCTGC
GGGTCTTTCGCCGTGTCCACGAGCCGAACGCTTCCAGGCGATCCGAATGG
AAGCACTGCTGTTGTAGGGTACTGCCGAAGTGTTGATTTCCCCCCCCCCC
CCCTCCCCTGATTTCGTAGGAGATTGGCCCAAAAGCAAGAGCAGGCCTGT
GAGCGTCCAGCTTTCGGCCTCGGTCCTTTTTTGGCCCATGAATCGCACGG
TACGTTCGCAAAGGCCCAGCGACGTCTGGCCCCGTGTAGTAATAGTATAG
CAAACAATTTATAGCCTTCGCTTTCACGGCGCACTACATATACGTAGTTT
GAGCACAGTTCTGTCTTTTTTGCTGCCGCAATACGCTGCTCGAGGCAGCA
GCCGCGACGGCCTCGGTAGGCGGTTCAGCGGCGGACGGGTATGAGCGTCT
CTGTGCACGTACCTGTATACGGCGGCGGTGAGACCACTGAGCCCCTTCGG
AAACGTGCATGCTCTTGGATGGTATTTAGTTTAACCCTGGAGACTGCTGC
AACTCTTTCGCCCTGCAAGATCGAAGCGATCGCAGCACACAACAGCGTAT
ATACATAAGACGAAGTAACACAATAGCTTGTCGTCCGAACGTTCGAACCC
GACCGACGCGGAACCTGCTGGAATGCACAGAGTGCCGTGGAGATGGACCC
GTCCATGGCCGACGCCTGGAGCAACCTCGGCAGCGCGTACCACCACGAGA
AGGAGTTGGAGGATGCCCTGGGCTGGTACGTGCTGATGCCGCACCTCTAA
ATATTGCATCCACGTAGTATAACTTCGACCTCACCGTCGACGAGGGAAAG
GGACGGCTGAACCCTTCTCGAGACAAAATTCGTAGGCAAGCACCGCAGAC
GGGGGGGGTGGAGGCCTTGGGGAAAGGAACCGTTCTGTGTGACCACGGTT
CAGTACTCTGGCAAGATGTCCTCGTGACAGGGAGCCAGCCCATCGAGCAC
TGGAAATAAATGTGAATAATTTATGTACTTCTGCTGTGACGCAAGCCCAA
CGGTCTGCGATGATTATCTAGTTGTTGGCTCTTTGCTGCGCCACACGTGC
GGTACAAAATTAGGGGCTGCTGCATAGACTACGGCACTTACTGACGCGAG
ATACGTGAACACAAAATGCGTTCACTGTCTTCCGCGTAGTACATACGTAC
AAGTTTGTTTTTTCACACGGTGTGTACTAGCGGGCGAGCTCGGGCACCGG
CTTCCGTTGAAGAACTTACTCGAACCCTTCTAGCCCCAGCCGAGAGCCGC
TCACCCTCGAGGTTTCCACGGTCTGCAGATCACACGCGAGGCTTATTTTC
ATTAACTTGCAAAAACCTAGAGGCTTTTCTTCCGAAGACCCCTGGGATGT
AGTAACCCAGTACGTGGTCTTTCACGGTTCACAAGACTCTTTAGCTTCCG
AAAACCCCTGGGATGTCGGCGTCGGTTGCAACGACGCGGGACTAGCTTTG
CTGTCGAAATGTTTTGTCACGAGCTCTCCGTTCACTACGCGAGCTGTCAC
TCAGGCTGCCCCCTCCCCCCCCCTTGAGTTTTTGCTTGGCGGCGCGTTTG
TTGCGCGTGAGCATGATTGGTGATCGAATGAGATGTGTCGTTTTGGCTTG
TGTGGAACGAGAGCCCCCTAACGCGAAGCGAGTCAGCCCCGCACTGGGAG
TCCCACGCCGTCCCGGGGCAACAGTAGTAGTAGTGTGCGGTCGCAGGGAA
CCCATGTCCGCGTTGCGGCTCAGTTTGGCACCCTCTCACGTCAGCAGCGA
AACCGCTGCTGTGCCCCCCCCTTTGGTCCGCCACTGCGGCCGGGTTTCCG
CAGCTATCAGGAGGCGATCCGACTGTACGAGACGGAGGAGGCGTACAAGG
GTCTTCCGTTCACCGACGACGTTCTCGCCACGCTCAACTACCACACCTCG
GTGAGTGGACAGCATCGTCGAGGCGCGGTTGGTTCTTCTCGCTCTCTCTG
GTGTCAAAGTCGAAGATTCTTGCTGCATCCATCGGCGTGCAACAGCTATC
CAAAAAGGGGTTTGGTTGTTGACGACCTCCTTACTGCCCCGCCATGAGCA
TCCGCGTAATGTTGTTGTTGCCGTCGGGTGTTGTCATTGCGCGTGTCACG
CGATTCTCGCCGCGTTTGATCCTTGAAGCCGTATGTAGCGAGCCCCTCTC
GGCGCCCAGCCTCTTGGATCGATCAGCGGGGGAGCACACAGCCCCCCTGC
ACCTCGGTCGTATTCTCAGCTGCTGCCGCATCACGACTTGATGACATCAT
GCTCGCAAATCGCGCGCGCGCACCTTGGGCCGCCGAACCACCGGCGTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCCG
TGATGGCATTACCGGGATGCTCCTGAACCGTAATTTTTGTCACTTTGTAC
GGGCTTACAACGGCACCCCCCTCCCCCGCATCCTGACCCGCCGTCTCGCA
CTCATTCAGGTTCTCCTGTCTAAAATTCCCGACGGTCGCTGCCGTCCGGG
AGGCTGCACGGCCCAGTGGATGGAGCATCTCCGGAGATGCCTCAGGCACG
ACCCGGAGCACGCGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13343:581..4847-

>mRNA_L-elsbetiae_contig13343.2587.1 ID=mRNA_L-elsbetiae_contig13343.2587.1|Name=mRNA_L-elsbetiae_contig13343.2587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig13343:581..4847- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAAGGCACTTCGTCCAGGGCAATACGTACTACACCGACCAGGAGCT
CGAGAGATGCGAAGGCACTTCGTCCAGGGCAATACGTACTACACCGACCA
GGAGCTCGAGAGGGCGGTCGAGGAGTACAAGACGGCTCTCAAGTACGACC
CGCTGCACGCGGACACCATGTGCAACCTCGGCAGCGCCCTTCAGGACCTG
GGGGACTACCCCCTCTCGAGGGCGGTCGAGGAGTACAAGACGGCTCTCAA
GTACGACCCGCTGCACGCGGACACCATGTGCAACCTCGGCAGCGCCCTTC
AGGACCTGGGGGACTACCCCCTCTCGAGGCATTACTACTCAAAGGCCGTG
AAGGCCAACCCATACCACGCCGTGGCGCACTTCAACCTTGGACTGCTCCT
ACACGACGAGGATCTAGAGACGGCCATGGAGCACTACCAGGCATTACTAC
TCAAAGGCCGTGAAGGCCAACCCATACCACGCCGTGGCGCACTTCAACCT
TGGACTGCTCCTACACGACGAGGATCTAGAGACGGCCATGGAGCACTACC
AGAGTGCCGTGGAGATGGACCCGTCCATGGCCGACGCCTGGAGCAACCTC
GGCAGCGCGTACCACCACGAGAAGGAGTTGGAGGATGCCCTGGGCTGAGT
GCCGTGGAGATGGACCCGTCCATGGCCGACGCCTGGAGCAACCTCGGCAG
CGCGTACCACCACGAGAAGGAGTTGGAGGATGCCCTGGGCTGCTATCAGG
AGGCGATCCGACTGTACGAGACGGAGGAGGCGTACAAGGGTCTTCCGTTC
ACCGACGACGTTCTCGCCACGCTCAACTACCACACCTCGCTATCAGGAGG
CGATCCGACTGTACGAGACGGAGGAGGCGTACAAGGGTCTTCCGTTCACC
GACGACGTTCTCGCCACGCTCAACTACCACACCTCGGTTCTCCTGTCTAA
AATTCCCGACGGTCGCTGCCGTCCGGGAGGCTGCACGGCCCAGTGGATGG
AGCATCTCCGGAGATGCCTCAGGCACGACCCGGAGCACGCGCTGGTTCTC
CTGTCTAAAATTCCCGACGGTCGCTGCCGTCCGGGAGGCTGCACGGCCCA
GTGGATGGAGCATCTCCGGAGATGCCTCAGGCACGACCCGGAGCACGCGC
TG
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