mRNA_L-elsbetiae_contig13342.2586.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13342.2586.1
Unique NamemRNA_L-elsbetiae_contig13342.2586.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13342.2586.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.400e-23
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   19 RLGLLLGLSPTSTAALYVALAAAFLRAAAGVQDVAAEAGVSTEAAFGFARSLCPLPALWCLCRMARGG 222
            RLGLLLGLSP STAALY ALAAA LRAAA VQD AAE GVSTEAAFG +RSL PLPALW LCR+ARGG
Sbjct:  788 RLGLLLGLSPKSTAALYAALAAACLRAAAAVQDSAAEGGVSTEAAFGVSRSLLPLPALWYLCRLARGG 855
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13342.2586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQQ0_ECTSI1.400e-2383.82GPI ethanolamine phosphate transferase 3 n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13342contigL-elsbetiae_contig13342:3171..3436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4.8e-20
Seed eggNOG ortholog2880.D8LQQ0
Preferred namePIGO
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051377,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.mannose-ethanolamine phosphotransferase activity
EggNOG OGsCOG1524@1,KOG2126@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size267
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.629018-CDS-L-elsbetiae_contig13342:3170..34341622815508.629018-CDS-L-elsbetiae_contig13342:3170..3434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13342 3171..3434 +
1691682932.7522366-CDS-L-elsbetiae_contig13342:3170..34341691682932.7522366-CDS-L-elsbetiae_contig13342:3170..3434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13342 3171..3434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13342.2586.1prot_L-elsbetiae_contig13342.2586.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13342 3171..3434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13342.2586.1

>prot_L-elsbetiae_contig13342.2586.1 ID=prot_L-elsbetiae_contig13342.2586.1|Name=mRNA_L-elsbetiae_contig13342.2586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
TGGGGGRLGLLLGLSPTSTAALYVALAAAFLRAAAGVQDVAAEAGVSTEA
AFGFARSLCPLPALWCLCRMARGGSGGGGSGGAGGARR
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mRNA from alignment at L-elsbetiae_contig13342:3171..3436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13342.2586.1 ID=mRNA_L-elsbetiae_contig13342.2586.1|Name=mRNA_L-elsbetiae_contig13342.2586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=266bp|location=Sequence derived from alignment at L-elsbetiae_contig13342:3171..3436+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGTGGCGGCGGCGGCCGGCTGGGGCTGCTCCTCGGGCTCTCTCCGAC
GTCCACGGCGGCCCTGTACGTGGCCCTCGCCGCCGCGTTTCTGCGCGCCG
CCGCCGGCGTTCAGGACGTGGCCGCCGAGGCGGGCGTCTCCACCGAGGCC
GCGTTCGGGTTCGCCCGGTCCTTGTGCCCCCTGCCCGCGCTGTGGTGTCT
CTGCAGGATGGCCCGCGGCGGTAGCGGCGGCGGCGGTAGTGGCGGCGCTG
GCGGAGCTAGACGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13342:3171..3436+

>mRNA_L-elsbetiae_contig13342.2586.1 ID=mRNA_L-elsbetiae_contig13342.2586.1|Name=mRNA_L-elsbetiae_contig13342.2586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig13342:3171..3436+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGTGGCGGCGGCGGCCGGCTGGGGCTGCTCCTCGGGCTCTCTCCGAC
GTCCACGGCGGCCCTGTACGTGGCCCTCGCCGCCGCGTTTCTGCGCGCCG
CCGCCGGCGTTCAGGACGTGGCCGCCGAGGCGGGCGTCTCCACCGAGGCC
GCGTTCGGGTTCGCCCGGTCCTTGTGCCCCCTGCCCGCGCTGTGGTGTCT
CTGCAGGATGGCCCGCGGCGGTAGCGGCGGCGGCGGTAGTGGCGGCGCTG
GCGGAGCTAGACGGACCGGTGGCGGCGGCGGCCGGCTGGGGCTGCTCCTC
GGGCTCTCTCCGACGTCCACGGCGGCCCTGTACGTGGCCCTCGCCGCCGC
GTTTCTGCGCGCCGCCGCCGGCGTTCAGGACGTGGCCGCCGAGGCGGGCG
TCTCCACCGAGGCCGCGTTCGGGTTCGCCCGGTCCTTGTGCCCCCTGCCC
GCGCTGTGGTGTCTCTGCAGGATGGCCCGCGGCGGTAGCGGCGGCGGCGG
TAGTGGCGGCGCTGGCGGAGCTAGACGG
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