mRNA_L-elsbetiae_contig1333.2577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1333.2577.1
Unique NamemRNA_L-elsbetiae_contig1333.2577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 8.000e-108
Identity = 184/209 (88.04%), Postives = 192/209 (91.87%), Query Frame = 1 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSPA 627
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFAD++DAGDAV++IDGKSI+GREWRVE+SHQRGRDRG    XXXX   XXXXXXXXXXXXXXXX GAPR GGAAPRTG+KVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDD G+       PA
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGXXXX---XXXXXXXXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPA 206
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 5.080e-62
Identity = 132/206 (64.08%), Postives = 140/206 (67.96%), Query Frame = 1 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEI------------------------------------------SHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 492
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFAD++DA DAV+++DG+SI+GREWRVEI                                          SHQRGRDRG        GYG  XXXXXXXXXXXXXXX             +KVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRGPPGG----GYGGGXXXXXXXXXXXXXXXXXXXX----XXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 193 bits (490), Expect = 4.090e-54
Identity = 116/222 (52.25%), Postives = 146/222 (65.77%), Query Frame = 1 
Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISH-QRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNA-----------RGRSRSP 624
            MGD    GTKV++GN+     E +LRDEF+++G L +VW+ARNPPGFAFVWF+D +DA DAV+ +DG  ++G+  RVEISH +RGR   XXXX    GYG       XXXXX       PRAGGA  +TGFKVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++RD M RA REL DT F DRRI ++ +D  +            RGRSR+P
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQVWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNRRGRRXXXXXXGRGGGYGDRDRGYDXXXXXSSRPP--PRAGGAPRKTGFKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDRYRRDSRSPPPRRGRSRTP 219
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.610e-37
Identity = 94/211 (44.55%), Postives = 124/211 (58.77%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAP--RTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARG----RSRSPA 627
            GT+V+VG L      R+++D FS++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVEI+  RG  R         G G      XXXXXXXX   G  R  G  P  RT F+VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF +++DM  A+++LDDT F    +R+  +  G        RSRSPA
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVSNIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIA--RGGSR-----RDDGGRGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQRTDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSSRRSRSPA 205
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.240e-34
Identity = 77/204 (37.75%), Postives = 114/204 (55.88%), Query Frame = 1 
Query:   22 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPR---TGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSP 624
            +V+VG +  +   R++ + F +FG++  VW+ARNPPGFAFV F D +DA DA+KD+DGK + G   RV+++  RG  R          Y                        G++ R   +G KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +        R RS+SP
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKIVNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMA--RGGVRRGGRGDRDRSY----------------------RDGSSDRHRSSGHKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSIKA-----VRDRSQSP 179
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A484E7I0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7I0_BRELC)

HSP 1 Score: 142 bits (359), Expect = 1.900e-34
Identity = 78/205 (38.05%), Postives = 113/205 (55.12%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSPA 627
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVE++    R  G         +G                    R      RT F+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  AV++LDDT F    +RV  +  G++  RSRSPA
Sbjct:   90 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGREFLGGRIRVELARGGSRRDGGGRRGDDERFGRGGSGGDRVE----------RGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAVKKLDDTEFRGSYVRVAPE--GDSSRRSRSPA 282
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A7S3PMS3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMS3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.350e-33
Identity = 108/201 (53.73%), Postives = 135/201 (67.16%), Query Frame = 1 
Query:   19 TKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAP-RTG-FKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRS 615
            +K++VGN+     E +L D+F K+G+++ VW+ARNPPGFAFV F D +DA DA+KD++ +   GR  RVE+S +R     XXXXXXXX   XXXXXXXXXXXXXXXXX   R G     R G F+V ITGLP    W +LKDF+R+ G+V YADVR  EGVA+F   DDM RAVR+LD T F    I +  +D G  R RS
Sbjct:    2 SKLYVGNIPDDTREGELEDKFKKYGKISSVWLARNPPGFAFVTFDDPRDAEDAMKDMNDREFLGRRIRVELSKERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGRHRDYRQGEFRVIITGLPSRCSWQDLKDFLRRGGEVCYADVRDGEGVADFLTADDMDRAVRKLDGTDFDGGPITIK-EDRGGRRDRS 201
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 133 bits (335), Expect = 8.450e-33
Identity = 75/186 (40.32%), Postives = 107/186 (57.53%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDR----GXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYF 558
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVE++  RG  R    G XXXX   GYG                    R      RT ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA--RGGSRRDGGGRXXXXDRGGYGGRGGDRFD------------RGRNPPQRTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 8.830e-33
Identity = 87/207 (42.03%), Postives = 120/207 (57.97%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGR-DRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAP--RTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNARGRSRSP 624
            GT+V++G L      R+++D FS++G +  +W+ARNPPGFAFV F D +DA DA++ +DG+   G   RVE++    R DR XXXXXXXX  G                      GG  P  RT F+VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +RDD+  A+ +LDD  F    IR+    +   R RSRSP
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHIANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDRXXXXXXXXXXRGGDRF----------------ERGGRNPPQRTEFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRITAA-SSEERSRSRSP 191
[Close]
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Match: H3GHB6_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GHB6_PHYRM)

HSP 1 Score: 134 bits (337), Expect = 3.900e-32
Identity = 93/206 (45.15%), Postives = 129/206 (62.62%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADEKDAGDAVKDIDGKSISGREWRVEISHQRGR-DRGXXXXXXXXGYGXXXXXXXXXXXXXXXXXGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGNAR-GRSRSP 624
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D +DA DA++ +DG+   G   RVE++    R D  XXXXXXXX   XXXX    XXXXXXX     R      RT F+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF ++ D+  A+++LDDT F    +RV  +   +AR  RSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELARGGSRRDXXXXXXXXXXXXXXXXXDDDRXXXXXXXRDRFERGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQSKQDLDDAIKKLDDTEFRGSYVRVAAEGGDSARRSRSRSP 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1333.2577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E4_ECTSI8.000e-10888.04Similar to arginine/serine-rich splicing factor 7 ... [more]
A0A6H5L109_9PHAE5.080e-6264.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7K1_9STRA4.090e-5452.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6YQ52_9STRA4.610e-3744.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0XSF8_9STRA1.240e-3437.75Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A484E7I0_BRELC1.900e-3438.05Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S3PMS3_9STRA1.350e-3353.73Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
G4YPP5_PHYSP8.450e-3340.32Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A8K1CTI4_PYTOL8.830e-3342.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GHB6_PHYRM3.900e-3245.15Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1333contigL-elsbetiae_contig1333:7956..13812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue1.1e-88
Seed eggNOG ortholog2880.D7G5E4
Preferred nameNPL3
KEGG koko:K12893,ko:K12896,ko:K14651
KEGG Pathwayko03022,ko03040,ko05168,ko05202,map03022,map03040,map05168,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000993,GO:0001067,GO:0001069,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022411,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031369,GO:0031370,GO:0031503,GO:0031554,GO:0032268,GO:0032269,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0034243,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042886,GO:0043043,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0045292,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060567,GO:0065007,GO:0070063,GO:0070717,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904594,GO:1990904,GO:2000112,GO:2000113,GO:2000804,GO:2000805,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0106@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-06_010740.1
Exons7
Model size1733
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1333.2577.1prot_L-elsbetiae_contig1333.2577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1333 9124..13812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.7342353-UTR-L-elsbetiae_contig1333:7955..82281622815507.7342353-UTR-L-elsbetiae_contig1333:7955..8228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 7956..8228 -
1691682932.2268143-UTR-L-elsbetiae_contig1333:7955..82281691682932.2268143-UTR-L-elsbetiae_contig1333:7955..8228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 7956..8228 -
1622815507.7475927-UTR-L-elsbetiae_contig1333:8437..91231622815507.7475927-UTR-L-elsbetiae_contig1333:8437..9123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 8438..9123 -
1691682932.2370253-UTR-L-elsbetiae_contig1333:8437..91231691682932.2370253-UTR-L-elsbetiae_contig1333:8437..9123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1333 8438..9123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.7573156-CDS-L-elsbetiae_contig1333:9123..91401622815507.7573156-CDS-L-elsbetiae_contig1333:9123..9140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 9124..9140 -
1691682932.2441733-CDS-L-elsbetiae_contig1333:9123..91401691682932.2441733-CDS-L-elsbetiae_contig1333:9123..9140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 9124..9140 -
1622815507.7671096-CDS-L-elsbetiae_contig1333:9733..99051622815507.7671096-CDS-L-elsbetiae_contig1333:9733..9905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 9734..9905 -
1691682932.2516117-CDS-L-elsbetiae_contig1333:9733..99051691682932.2516117-CDS-L-elsbetiae_contig1333:9733..9905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 9734..9905 -
1622815507.7804503-CDS-L-elsbetiae_contig1333:10303..103971622815507.7804503-CDS-L-elsbetiae_contig1333:10303..10397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 10304..10397 -
1691682932.2658222-CDS-L-elsbetiae_contig1333:10303..103971691682932.2658222-CDS-L-elsbetiae_contig1333:10303..10397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 10304..10397 -
1622815507.7978842-CDS-L-elsbetiae_contig1333:12045..123051622815507.7978842-CDS-L-elsbetiae_contig1333:12045..12305Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 12046..12305 -
1691682932.2745917-CDS-L-elsbetiae_contig1333:12045..123051691682932.2745917-CDS-L-elsbetiae_contig1333:12045..12305Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 12046..12305 -
1622815507.8152103-CDS-L-elsbetiae_contig1333:12573..126991622815507.8152103-CDS-L-elsbetiae_contig1333:12573..12699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 12574..12699 -
1691682932.282839-CDS-L-elsbetiae_contig1333:12573..126991691682932.282839-CDS-L-elsbetiae_contig1333:12573..12699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 12574..12699 -
1622815507.8270192-CDS-L-elsbetiae_contig1333:13707..138121622815507.8270192-CDS-L-elsbetiae_contig1333:13707..13812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 13708..13812 -
1691682932.2913628-CDS-L-elsbetiae_contig1333:13707..138121691682932.2913628-CDS-L-elsbetiae_contig1333:13707..13812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 13708..13812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1333.2577.1

>prot_L-elsbetiae_contig1333.2577.1 ID=prot_L-elsbetiae_contig1333.2577.1|Name=mRNA_L-elsbetiae_contig1333.2577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWF
ADEKDAGDAVKDIDGKSISGREWRVEISHQRGRDRGGGGGGGGGGYGGGG
GGGGGYGGGGGGGYGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRK
AGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAGN
ARGRSRSPARRRSRSPPPRRGSPPRGRSRSPPAAAAPPTGAAAAAAPLAG
TTGTNVQ*
back to top

mRNA from alignment at L-elsbetiae_contig1333:7956..13812-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1333.2577.1 ID=mRNA_L-elsbetiae_contig1333.2577.1|Name=mRNA_L-elsbetiae_contig1333.2577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5857bp|location=Sequence derived from alignment at L-elsbetiae_contig1333:7956..13812- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGATGTACCTGGAACGAAGGTTTGGGTGGGTAACCTCGGGAGCAC
GTGCGAGGAGCGCGACCTGAGGGATGAGTTCAGCAAGTTTGGAGAACTGA
ACAAGGTGTGTGTGTGTTTCCAGGCCACGAAAACCTTTCTTGGGGCACAA
TTTCAGTCGAACAAAGGTTATAGATTAGCATTGCTCTATCGGCACCGGGA
AACTCACATCCACACTCTTTCCACCCGTTCACAGCTGCAGACGCTTGCTG
GGACGAAGCAGTTGCTCATTTATTTTTCAATTTGTTTTGGCGGAGAAGAG
AGAGCATGGGGGGTCGCTGTCTTCTTTTTCTGGCAAAAGACAGATCTTCG
CACACGCGCGCCTTTTTTGCTCGCCGCTCTCGTCCATTCCCACACGATGC
GGCGCTACTCTAGACGTGTGCCGGTGCCACAGCCGCCCCGGTGTGTGTCT
CACTTCGATCCTGTGCTTTGGCTCCCATTCCCAACTCTTCCCTCTTTTTT
CGTCCACGGCGCCTTTTTTTTAACTCGTTTGTGCCTCTTCTGTCCGCCTT
TTTTCGGTGATGGGAAAAAAAATCAAATTTTCAATTTTTTTTTTTCTCAC
CCGCTCTTCTGTGCGGTATGTACCCTGCCTGCTGCTGCTGTGGGTGTTGC
GCGGGGGGTTTGTCGGGACCCCTTGTTTGTTTTCCATTCTGTTGCGCAGG
TGTGGGTCGCACGAAACCCGCCAGGCTTTGCATTTGTTTGGTTTGGTGAC
GAACGCGATGCCACCGACGCAGTTCGCGAGATCGACGGGAGAAGCATTGC
CGGTCGCGAGTGGCGGGTTGAGATCGTAAGTATTTTAGGACCACCTTTTT
GCTGTGCGCGAACAAAAGAAATCTCCTCAAAGGCAAAACACCCCGTGTGT
CTTCTTTGCTTTTTGTCTGCCGTTGTCTGTTCTCGGTGTTCCGCTGCCTC
TCTTTTTGTGTTTCCCTGCCGTGGTGGTGGCTGTTCTTTTGGCTTTGTTT
CGCATGGGCGGCATGCCACCACCACCACCACCTTGCTTTCTTGCTTTCTT
CTTCGCTACTCCTCTCCCCAAAATGCAAAAAATACAAAAAAATACAAAAA
AATAAATACATAGGTGTGGGTCGCCCGCAACCCACCTGGCTTCGCTTTCG
TCTGGTTCGCCGACGAAAAAGACGCAGGCGATGCCGTGAAGGACATCGAT
GGGAAAAGCATATCCGGTCGAGAGTGGCGTGTGGAAATCGTGAGTCCGGG
GTTCCAAACCGACCGGCAGCCGGGGGGGGGCGCGGGGGGCACGGGTCCAT
GTTTTCCCTCCCTGTGCCACCCCCCACCCCCCCTTAACTCTGAACCCGAC
CCCGCCCTCCGACCCTCGCTTTTTACTACGTCTGCGGCGTTTTTTTTCCG
TTTTTTTTCCGTTATTTTTCCTGGGCGCCGGCTGATAAATGACCGAACCG
AAACGTCCCGCCTTGTTGAATATGTTTTTTGTTTCTCGGGCTGTTGGCGG
CCTGTAGTCCCACCAGAGGGGCCGTGACCGCGGTGGGGGCGGCGGCGGCG
GCGGCGGCGGTTACGGCGGGGGCGGAGGAGGAGGAGGGGGGTACGGTGGT
GGAGGAGGAGGAGGGTACGGCGCCCCCCGCGCCGGCGGCGCCGCGCCCCG
CACGGGCTTCAAGGTCCGCATCACCGGCCTGCCCGAGGGCATGCGGTGGT
CCGAGCTGAAAGACTTCGTGCGCAAGGCTGGAGACGTCACCTACGCTGAC
GTCCGTGGAGACGAGGGGTACGTTGGGATTTCTTTGCAACGGGGAAGGCT
GTGTGTCCGCGGCAACGTGTTGCGTAGTTTTGTTCAAAATATGTTTTCAC
GCTATTTTAGCGTGGGAGAACGCACGTTGATGCATCAATGTAGAAGTACT
TTTAATGTACGTAACCTGGTCCCATCACTGTTGTGTTCATTCAGCGCCTG
CCGGATTCATCTAGATCGGCGTGAAAAACAAGATCTGAGATCCGGCAAAT
GGTGCCTAGATCGACCCCTCCCCCCGCCTCCCCGGCCTTGATGGCGTTGC
GTTGCCTTGATTTAGGGGCGGTTGGGCTCCGTTGCAAGAGCTTTTGTTTT
GTGCCCTCCTCTCTAACCACCCCAAACGCCTCTCTTTCTGCCACGTGGCG
GTGCCGATCCTCGCACACGATGCGGGGAGGGGGGATACTGGTAAGAAATA
CGCCCCCGAATCCCCTGTAAGATCGTCCGGTCAGCATCGTCGCGAAAAAA
AAGTACGACTGCAAGCCTACGCTACCTACCAACCTAGCGGGTGTTTTTTC
CGACAGCCGGCGTTCGTGTGTTTGGAAGCGGGGGGGGGAGCAAGTGGGGG
CCCCACTTGTCTTTTCTTCTTGCTTCCCGGGCTTCGTACTACTGTAGCGG
ACACATCCAGCGGTAGTTGCAGGCGGCACAACGGCTGGCTGCCGTCAACG
TTGCGGTCGTGTCGACGGCACTTGAGGCTCTACATTCTCCTCTTCTTTTT
CAGCACGAGAGCCCGATAGCTGACGTATGTTGGGGAGGGGGGGGTGAGTG
GCTACCCTGCCGATGCAAAGAAAATTTCACCCTCTACGGGAAAGGGAAGC
TCAGCTGGGCTCTGCTGCCGGCCACACCCGGCTGCTTTTCGAGAGGGCGC
TTGGCTCTACCCGCATGTACTTTTGGGGCTTGCATCGAGCGTGCGTCCAC
TGCTGAGCTTCCTTGCTTCGCTTACAGTTTAGAGCTTCACTACTGCTACT
ACTACTACTACTACTACTACCGCTGCTGCTACTGCGTACCTACACAATGC
GAGAGCGCTTCCTCTCCCGTCGTCGTCCGGCAAGCGCCTCATCCCCAACA
TGATGACACCAACGACAACAACTCCTGCTTTCTACTGGTTCCTCACCCAC
CCTGGTTGTGGTACTCGTCTGCCTACCGCTGCGTTGGCTACCGCTTCGCG
CCACTCACAGAAGTTTCCTGCCCTGCGGCGGATGAGTCGCGGTACCGTAC
CGTTCAGTTTCCGGTGCAGCCTTTTTTGTGTGGTTGTTTTGAGCTTGGAT
TGCGTTCGATGCTTGCGCTTGCGAGGTGGATGATGACGCGTGCAGAAAGT
GAGTTTAGATCGAGACAAGAGAGAGAGAGACATTTGTGTTGGAAGTCGTT
CGAAGATTTATTGCGTTGGCTCTTTGGATCGATGCACGCTCCTGCTGCGC
GGCATGGACAACCAACCCTGCGCCTGGCTTCTAGGCGGAAGTTTGCCGCC
GCCGCGGATTGCCGGGAACCCCGGCCGTATTCTTACCTTTCGCGTCTCTC
CTCCTGTCCTTCCACCTCGGCCTGGGGATCTGGTACCTCCCTGCCCTGCT
CCTTTTCTCTTCTTCTCTTTCTGTTTTGTGTGTGTTTCCGGGGTGGGGGT
GTTTTGGGCCGTCAGTGTGGCTGAGTTTTCCAACCGTGACGACATGTCGA
GGGCGGTGAGGGAGCTGGACGACACCTACTTCGCCGATAGGCGCATCCGC
GTGGACTATGTGAGTACTCGCTTGTTTGTGGTGTGTTTTGGCGGCCTCCG
TCTCCCGTTGGGGCTATAGGTTTTGAGTTTCGGACTGCGCGGCTAACCGG
TCTGCTCGAGAACTGATGGCACTCGAGTCTGTTTCGGCGATCGTTTACCT
GGGACCCTCGAGGGTTCGTGTCACACTGCCGTGTATTGCTCGTCGCAAGA
ATCAAGGAGTGGAGCGCTGCATGCCTGTCCCATCACTCTACTGCCGCACG
TGTATCTTCTCTTTTCGTTTTGTCTACGTTTTTTTTCCCTTTGCCCCCCG
TGTGTGCGTGCTCTTGCAGGCGTGCACACGTGTTCCATGTTCTGAACCCT
GGTTTTGACGTACACACACGTATGTATACATTTGTCGTTTTTTCTCCTTC
CCTCCAGGACGACGCGGGTAACGCCCGCGGGCGCTCTCGCTCTCCCGCCA
GGCGCCGCTCGCGCAGCCCGCCCCCCCGCCGCGGCAGCCCCCCCCGCGGC
CGCTCCCGCTCCCCCCCGGCCGCGGCCGCTCCCCCTACGGGCGCAGCCGC
AGCCGCAGCCCCCCTCGCCGGGACGACAGGTGAAAATATATAGAGGTATA
TTCTTGGTACGTACGTTTTTTGTACAAGCATATGAGTCAGCCTGTGACGA
CGGGAATCGACCGCATCAAGTGTTGAAATAGTACGCCCATTGGGAGGTAC
TGGGTGGAGAGATCGGAACGGTTTTTAATTTTTAAAGTGAAAAAATAGGA
AATTTTTTGTGTAAGTGTATGAAATACATGGCCTAGGGTTTGTGGGTTCC
CCTGGGCTGCTTCCGTAGTTTTTATTTTTAGCCAAAGTGAAGATATCTAT
GTCTCCCAAGCACAAAGGGAGGATAGATTAATTCAACCCCAACTCTTCTT
CATCCGCATGGAAACGTGCCTGGAGTGGGGGGGCAATGTGGAAACATGGG
AAATAGAGCGAGTGACAACCTTGTGTCGCAACGTGATGCCAAGTCTCACG
TCTGTCTGCGGCGGGGCGGACGAACTGTGGTGTCGTCGGTTTGAGGGTAT
GGTGCTGGAAACGGTAGCTGCCCGTCCATCTGTTGGAAGTGTCGTGGTTG
TTGTGTGTGCCTTACTCACCATCTTGCTTCCGTTTTGGTACGCTTTTTCA
CCCGCTCGCGCTCCGCCATCAGGTACTAACGTGCAATGACCTCCACGCGC
TATGGTGCAACGAGCCGGTGATGACGTCAATCTTCTTCTTGCGCTGCTCG
GGGCAATTAAGAACGGCGGAGTAGATTTACTGTAGAGCCAGCCGCTGAAA
GTCCACTGCTGGTCGGATGACTAGCGTTGCGTGTCGATTGGCTGTTGCTG
TATAGTTAGGTCTTTTTCGGTGGATCGTTTGTGTGTTGTGTCAAAGTTTC
GTCCATCCTTTTCAACACCTGAATGTGAGGGGCGATGTTAGTTTTTTAGT
GTAGACGCGCGCGCTGCTCCGGGCCGAGTCGGCTCGTCAGTAGGCCGCCA
CCAACAGCCAGCGTTCCTCCCCGCAGCGTGTTGGTGTGTGGGACGAAGAG
TCCGTTGTAGCAAGCAATAGAGGAAAGGATTCGTGACACACAACGAGATA
CAAAGTACTTGTGGCACGCAGTCCCAAAAATCTGGCGAAGAATTTGAAAC
AGGCACGACGGAAGATTCTCTGATCCGTGAACGACTTGTGACGTCGTGAA
CGAGCGAGTAGTTGAGACTTTGTTGACGGAACTGCTGGATGGGTATGTAT
GCCCATCTGTCCCTACTGGCTGGCCCCTGCCAGCTAACTATAGCTCGCAC
GCGGGGCCATTTGTTTCGTTTCATGGCTGTCTTCGTGGTCCGTTGGTTGA
GGGAATACGAGTCACGTGCGCCCCCTGGTATTGTACTTTTTCACGTGATG
TGCACGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCCCCCTC
TCGTCTGTAGAGCCACCCCCACCTCTCGAGGGGGGGGGGNNNNNNNNNNG
TCCGTCGGTGGGGGGAAACCCGCCCCCGGCCCCCCCCTTCCGATCTACAC
TTTTCCGTGGTGTGGCACCACCCCCCCCCCCCCCCCTCTCATTCTACTAC
TTTGCGCGTTTCAGTCGGAAAATTGCTCTGAAGTGCAGAGAGGGGTCCAG
TAGAAGTGCCACGTGGGGGAATGGTTCCGTAGCGAATGCTTTGCAGTGAG
CTAGCTGTGTGCGTGTGTATTGGTCGGGTGAAGTGCGCGCTTGACGAAGC
ACGCGTTGCCTTCTGTGACTTTTGACACCGGTGGTCTGTCTCTACTGTTG
CCGTAACAACGTGGATTCAAAGGAGAAAGGATGTGTGGCATGCATATGTG
TACGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1333:7956..13812-

>mRNA_L-elsbetiae_contig1333.2577.1 ID=mRNA_L-elsbetiae_contig1333.2577.1|Name=mRNA_L-elsbetiae_contig1333.2577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig1333:7956..13812- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGATGTACCTGGAACGAAGGTTTGGGTGGGTAACCTCGGGAGCAC
GTGCGAGGAGCGCGACCTGAGGGATGAGTTCAGCAAGTTTGGAGAACTGA
ACAAGATGGGAGATGTACCTGGAACGAAGGTTTGGGTGGGTAACCTCGGG
AGCACGTGCGAGGAGCGCGACCTGAGGGATGAGTTCAGCAAGTTTGGAGA
ACTGAACAAGGTGTGGGTCGCCCGCAACCCACCTGGCTTCGCTTTCGTCT
GGTTCGCCGACGAAAAAGACGCAGGCGATGCCGTGAAGGACATCGATGGG
AAAAGCATATCCGGTCGAGAGTGGCGTGTGGAAATCGTGTGGGTCGCCCG
CAACCCACCTGGCTTCGCTTTCGTCTGGTTCGCCGACGAAAAAGACGCAG
GCGATGCCGTGAAGGACATCGATGGGAAAAGCATATCCGGTCGAGAGTGG
CGTGTGGAAATCTCCCACCAGAGGGGCCGTGACCGCGGTGGGGGCGGCGG
CGGCGGCGGCGGCGGTTACGGCGGGGGCGGAGGAGGAGGAGGGGGGTACG
GTGGTGGAGGAGGAGGAGGGTACGGCGCCCCCCGCGCCGGCGGCGCCGCG
CCCCGCACGGGCTTCAAGGTCCGCATCACCGGCCTGCCCGAGGGCATGCG
GTGGTCCGAGCTGAAAGACTTCGTGCGCAAGGCTGGAGACGTCACCTACG
CTGACGTCCGTGGAGACGAGGGTCCCACCAGAGGGGCCGTGACCGCGGTG
GGGGCGGCGGCGGCGGCGGCGGCGGTTACGGCGGGGGCGGAGGAGGAGGA
GGGGGGTACGGTGGTGGAGGAGGAGGAGGGTACGGCGCCCCCCGCGCCGG
CGGCGCCGCGCCCCGCACGGGCTTCAAGGTCCGCATCACCGGCCTGCCCG
AGGGCATGCGGTGGTCCGAGCTGAAAGACTTCGTGCGCAAGGCTGGAGAC
GTCACCTACGCTGACGTCCGTGGAGACGAGGGTGTGGCTGAGTTTTCCAA
CCGTGACGACATGTCGAGGGCGGTGAGGGAGCTGGACGACACCTACTTCG
CCGATAGGCGCATCCGCGTGGACTATTGTGGCTGAGTTTTCCAACCGTGA
CGACATGTCGAGGGCGGTGAGGGAGCTGGACGACACCTACTTCGCCGATA
GGCGCATCCGCGTGGACTATGACGACGCGGGTAACGCCCGCGGGCGCTCT
CGCTCTCCCGCCAGGCGCCGCTCGCGCAGCCCGCCCCCCCGCCGCGGCAG
CCCCCCCCGCGGCCGCTCCCGCTCCCCCCCGGCCGCGGCCGCTCCCCCTA
CGGGCGCAGCCGCAGCCGCAGCCCCCCTCGCCGGGACGACAGGACGACGC
GGGTAACGCCCGCGGGCGCTCTCGCTCTCCCGCCAGGCGCCGCTCGCGCA
GCCCGCCCCCCCGCCGCGGCAGCCCCCCCCGCGGCCGCTCCCGCTCCCCC
CCGGCCGCGGCCGCTCCCCCTACGGGCGCAGCCGCAGCCGCAGCCCCCCT
CGCCGGGACGACAGGTACTAACGTGCAATGAGTACTAACGTGCAATGA
back to top