mRNA_L-elsbetiae_contig1333.2576.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1333.2576.1
Unique NamemRNA_L-elsbetiae_contig1333.2576.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: D7G5E5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E5_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 6.020e-27
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    4 DLIFPRRQLPASAPSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQCHAVR 189
            DLIFPRRQLP SAPSL RLVLEVV AIAVYDA FFAWHA++HSN +LYRRVHAKHH+CH  R
Sbjct:  113 DLIFPRRQLPESAPSLGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQR 174          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A7S2UXV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.140e-22
Identity = 58/134 (43.28%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    4 DLIFPRRQL----PASAPSLARLVLEVVGAIAVYDAVFFAWHATVH---------SNKS---------LYRRVHAKHHQ------CHAVRHTFIDGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            DLI PRR L     A +PS   ++ ++  ++  YD +FF  HA +H          +KS         LYR +HAKHH       C AVRHTF+DG+M V CSI A+ +   HPL+RA++N+V+IGL+TELHAG
Sbjct:   16 DLILPRRHLLLENHADSPSALVVLWQLACSLFWYDVLFFFLHAFLHLGPGFLWGSGSKSGGVKESVGWLYRTIHAKHHSQPHLRACEAVRHTFLDGSMTVGCSILALKLAGSHPLARALHNIVLIGLLTELHAG 149          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A7S0SGA9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGA9_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 1.150e-22
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    4 DLIFPRRQLPASAPSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQCHAVRHTFI------DGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            D ++PRR LP  AP++A +  EV+G + +YDA+F A H  +H    L++RVHAKHH    VR   I      +   D  CSI A+ + R HPLSRAVYNVVI+ L+ E+H+G
Sbjct:  133 DWLYPRRVLPTQAPTVAGMAAEVLGTLVLYDALFTASHTVMHGVPWLFKRVHAKHHLHRHVRAREIFRLSAPEEVADTGCSILALTLTRAHPLSRAVYNVVIVFLLCEIHSG 244          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A6A7GA17_9CRUS (Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA17_9CRUS)

HSP 1 Score: 97.8 bits (242), Expect = 1.980e-22
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    4 DLIFPRRQLPASAPSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQC------HAVRHTFIDGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            D ++PRR+LPA + S  RL  EV   + +YDA+FF  H  +H   +++R +HA+HH          +R +F +  ++V+CSI A+NV   HPLSRAVYN+VII L+ ELH G
Sbjct:  130 DFLYPRRRLPADSVSFGRLWFEVTLCLLIYDALFFVAHWLLHIIPTVFRAIHARHHDMIPIKALDTIRLSFAEQIINVSCSIIAVNVSGSHPLSRAVYNIVIICLLVELHCG 241          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A7R9Y1J8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y1J8_MICPS)

HSP 1 Score: 94.0 bits (232), Expect = 2.250e-22
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   43 PSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQCHAVRHTFI------DGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            PS  RL L+VV ++AVYDA+F A H  +H + +++RRVHAKHH    VR   +      +  +DVACS+ A+N+ R  PLSRAVYNVVI+ L+  +H+G
Sbjct:    2 PSTCRLALDVVASLAVYDALFSATHRAMHRHPAVFRRVHAKHHANADVRARDVFRLSAAEEVVDVACSVIAVNITRAQPLSRAVYNVVIVALLCAIHSG 100          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A7S2S5J1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5J1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.560e-21
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    4 DLIFPRRQLPASAPSLA-RLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQCHAV------RHTFIDGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            D ++PRR+LP + P  A +++L +V A+ VYD +FF  H  +H  + L R  H KHH    +      RH+F+DG++ V C+I A+N+L+LHP SR +YN+V+  ++TE+H G
Sbjct:   85 DFLYPRRKLPDTCPGGAGKVLLHIVLALFVYDFLFFHIHVAMHKVEGL-RSFHKKHHSVRGLHSTEVLRHSFVDGSLQVMCNIAALNLLKLHPYSRTLYNIVVTYMLTEIHCG 196          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A830HPD7_9CHLO (Fatty acid hydroxylase domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HPD7_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 5.940e-21
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 DLIFPRRQLPASAPSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQC------HAVRHTFIDGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            D + PRR LP  AP+    + +V+ ++ +YD +F  +H  +HS+  LYRRVHAKHH         AVR + ++  +DV+CSI A+ +   HPLSRA++N+VI  LITELH+G
Sbjct:  120 DHVKPRRVLPPDAPTALACLAQVMCSLLLYDCLFAIFHRAMHSHPVLYRRVHAKHHHNAVVRARDAVRVSALEQLVDVSCSILALKLTGSHPLSRAIHNIVITFLITELHSG 231          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A7S2MS10_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS10_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.320e-17
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    4 DLIFPRRQLPAS---APSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQCHAVRHT------FIDGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            D+  PRR    +   AP+   +  EV+G++ +YD  FF  H  +H    LY+ VHAKHH+   VR +      F++  +DV  SIFA+N L  HP+SR +YN++I  ++TELH G
Sbjct:   73 DICIPRRAAKIAIWGAPTALGICKEVMGSLLLYDLGFFVCHYLMHKVPLLYKYVHAKHHRSSEVRASDIVNLSFVEEIVDVGISIFALNFLGCHPISRTLYNIIITFMLTELHCG 187          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A1Y1I1Z9_KLENI (Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1Z9_KLENI)

HSP 1 Score: 77.4 bits (189), Expect = 8.470e-15
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    4 DLIFPRRQLPASAPSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHH-------QCHAVRHTFIDGTMDVACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            D I+PRR+L    PS+ R+V +V+GA+ +YD +FF  H  +H    L RR HA+HH        C A R   ++    V  +I ++N+LR H LSR ++N+ I  ++TE+H+G
Sbjct:  108 DWIYPRRKLDQPPPSVERVVFDVIGALLIYDLLFFFSHLALHKVPFL-RRFHARHHVMGGDMRACDATRAHPLEELALVTFAITSLNLLRCHFLSRFIFNITIGYMLTEVHSG 219          
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Match: A0A4U0UET3_9PEZI (Fatty acid hydroxylase domain-containing protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0UET3_9PEZI)

HSP 1 Score: 64.3 bits (155), Expect = 8.090e-10
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   19 RRQLPASAPSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYRRVHAKHHQCHAVRHTFIDGTMDV-------ACSIFAINVLRLHPLSRAVYNVVIIGLITELHAG 321
            RR LPA+APS  RL LE++ ++ +YDA+FFA+H ++H    L +  H  HH+ H   H  I   + V         + F++N++  H L+R ++  + + L+ E+H+G
Sbjct:  188 RRALPAAAPSSRRLALELITSLVLYDALFFAFHLSMHIMPGL-KSWHKPHHK-HGEMHPQITNQLHVFERLGLVLLANFSLNIIGSHVLTRTLFVPIFVWLLVEIHSG 293          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1333.2576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G5E5_ECTSI6.020e-2782.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UXV7_9STRA1.140e-2243.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0SGA9_9CHLO1.150e-2246.43Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A6A7GA17_9CRUS1.980e-2244.64Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hiro... [more]
A0A7R9Y1J8_MICPS2.250e-2248.48Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S2S5J1_9STRA4.560e-2141.59Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A830HPD7_9CHLO5.940e-2144.64Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S2MS10_9STRA1.320e-1740.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Y1I1Z9_KLENI8.470e-1538.94Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium n... [more]
A0A4U0UET3_9PEZI8.090e-1034.26Fatty acid hydroxylase domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1333contigL-elsbetiae_contig1333:2054..2906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D7G5E5
Hectar predicted targeting categoryother localisation
EggNOG OGs2ER8Q@1,2SU3G@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010750.1
Exons2
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.6792135-CDS-L-elsbetiae_contig1333:2053..22331622815507.6792135-CDS-L-elsbetiae_contig1333:2053..2233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 2054..2233 +
1691682932.206576-CDS-L-elsbetiae_contig1333:2053..22331691682932.206576-CDS-L-elsbetiae_contig1333:2053..2233Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 2054..2233 +
1622815507.6967077-CDS-L-elsbetiae_contig1333:2762..29061622815507.6967077-CDS-L-elsbetiae_contig1333:2762..2906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 2763..2906 +
1691682932.2181165-CDS-L-elsbetiae_contig1333:2762..29061691682932.2181165-CDS-L-elsbetiae_contig1333:2762..2906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1333 2763..2906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1333.2576.1prot_L-elsbetiae_contig1333.2576.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1333 2054..2906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1333.2576.1

>prot_L-elsbetiae_contig1333.2576.1 ID=prot_L-elsbetiae_contig1333.2576.1|Name=mRNA_L-elsbetiae_contig1333.2576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
LDLIFPRRQLPASAPSLARLVLEVVGAIAVYDAVFFAWHATVHSNKSLYR
RVHAKHHQCHAVRHTFIDGTMDVACSIFAINVLRLHPLSRAVYNVVIIGL
ITELHAG*
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mRNA from alignment at L-elsbetiae_contig1333:2054..2906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1333.2576.1 ID=mRNA_L-elsbetiae_contig1333.2576.1|Name=mRNA_L-elsbetiae_contig1333.2576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=853bp|location=Sequence derived from alignment at L-elsbetiae_contig1333:2054..2906+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGACCTCATCTTCCCGAGAAGACAACTGCCCGCGTCAGCCCCTTCTCT GGCGCGGCTTGTTCTCGAGGTGGTGGGCGCGATAGCGGTCTACGACGCCG TCTTCTTCGCATGGCACGCCACCGTGCACAGCAACAAGTCCCTCTACAGG CGCGTTCACGCCAAGCACCACCAGTGCCATGTGCAGCGAGCTCCTGAGGT TCGTGGGCCTTGGGCATCCACCACGAAGTACGGACATACAACAACAAACA TCATATATAATTCTACAAACATAAGAGTCTAGTCTACATAGATAAAGATA TCGGTCGTCCATAAAAAATCACGACGAGATTAGCTTCGTGAATCGGTCGT CCAGAACAAAACACGACGAGATTATTAGCTTCGTAAACGCGACGAAGCTG GAACGTGAAGTTAGTTCCTCGTTTTGTTTTCGCGTGTAGTACATACGTGC CTTCGAAACAAGGTGGCGCTTTTTATTTCTGGCTTGGGGAACCGGACCGA GCACGCTTGTTTGAACAACTCCGTTTGCGGTTTGCGCCCACCTATAGATG TTGACTACAAGCAGCAGCAGTATGGATGTATCCCGAATAATGCATGTATA CCCTAACCTTGCTTGTCTTGCCATGCCGGGGTGTTTACCCATCCCCTCTT TCTTCTGCCGTGTGTTTCTTCGCGTTCTTATGTATATATGTATGTATGCG CGCCCTTAGGCCGTCCGTCACACCTTCATCGACGGGACCATGGACGTGGC CTGCTCCATTTTTGCGATCAACGTCCTCCGCTTGCACCCGTTGTCCAGAG CGGTGTATAACGTGGTCATCATTGGATTGATCACCGAGCTGCACGCCGGG TGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1333:2054..2906+

>mRNA_L-elsbetiae_contig1333.2576.1 ID=mRNA_L-elsbetiae_contig1333.2576.1|Name=mRNA_L-elsbetiae_contig1333.2576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1333:2054..2906+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGACCTCATCTTCCCGAGAAGACAACTGCCCGCGTCAGCCCCTTCTCT
GGCGCGGCTTGTTCTCGAGGTGGTGGGCGCGATAGCGGTCTACGACGCCG
TCTTCTTCGCATGGCACGCCACCGTGCACAGCAACAAGTCCCTCTACAGG
CGCGTTCACGCCAAGCACCACCAGTGCCATCTGGACCTCATCTTCCCGAG
AAGACAACTGCCCGCGTCAGCCCCTTCTCTGGCGCGGCTTGTTCTCGAGG
TGGTGGGCGCGATAGCGGTCTACGACGCCGTCTTCTTCGCATGGCACGCC
ACCGTGCACAGCAACAAGTCCCTCTACAGGCGCGTTCACGCCAAGCACCA
CCAGTGCCATGCCGTCCGTCACACCTTCATCGACGGGACCATGGACGTGG
CCTGCTCCATTTTTGCGATCAACGTCCTCCGCTTGCACCCGTTGTCCAGA
GCGGTGTATAACGTGGTCATCATTGGATTGATCACCGAGCTGCACGCCGG
GTGAGCCGTCCGTCACACCTTCATCGACGGGACCATGGACGTGGCCTGCT
CCATTTTTGCGATCAACGTCCTCCGCTTGCACCCGTTGTCCAGAGCGGTG
TATAACGTGGTCATCATTGGATTGATCACCGAGCTGCACGCCGGGTGA
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