mRNA_L-elsbetiae_contig1332.2569.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1332.2569.1
Unique NamemRNA_L-elsbetiae_contig1332.2569.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1332.2569.1 vs. uniprot
Match: A0A6H5L6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N4_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 2.140e-83
Identity = 408/847 (48.17%), Postives = 479/847 (56.55%), Query Frame = 1 
Query:    1 FITTLGSTQSQLQATVAQTSTGT----SPAPPSAEDLTEYDRRLETLRRSRDDLVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEVDEAEADQVAQEISSMAGRLKESSMAINQTLRTQTQVLEDTGDAATQNVDKVKRENVRVAERLRKKRAAMVASWCMMIAVLVTFFATYALVILPFEKRRGPFVSPSNLAFAQASEPTQPVPSQPQLDGSGGGA---EEVRRRSEQALREASQQARSKQQSANASHRVARAEKEXXXXXXXXXXXXXXXDRKTESGNGRDGHAPEIEAAPQQXXXXXXXXXXGVAQGEEEPELPAGSCSAPLPPSDGDAAAGAVGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXADGSCSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSAGCMPMFVYFGLSVSSPPPPVLPTAN--EHRRRAQVAYEERSRLETQRMESTNAGLRVVAEEKEKYRQRQAEEIMRKARXXXXXXXXXXXXXXXXXXXXXXAKEGHDEPEDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAGDHQVGSQEVVGDEGIAVPPGEKGDDGGKEKGGAAPAAPGSXXXXSAGEGAGAASPSVDSQE---LGRRMAEEAKLAYEKNSRRVEENLATQNAGLRVVAEEREKYRQRQTQSIMEGARKXXXXXXXXXGSYPAAELSDGQQTPTDPET-----------------KAIGGSS----AVDSLSAS-------ATGLEAVRMRLRESLAPK--AGDGEGG 2415
            FIT L STQSQLQA VA+ S G     SPA P+AEDL +YDRRLE LRR RDDL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                              XXXXXXXXXXXXXX          VAQEISSMAGRLKESS+AINQTLRTQTQVLEDTGDAA QNV +VKREN RV+ERLRKKRAAM ASWCMMI V+ TFFATY LVI+PFEKRRGPFV+    AFAQA+EP + +PSQ +   +  GA   EE++RR+++A RE +++AR + +  NA+HRVAR EKE               DRK  +   ++     +EA               V Q   +    A  CSAP P SD D++ GA     XXXXXXXXX           XXXXXX D   +     XXXXXXXXX       XXXXXXXXXXX     +   +P     G   S+  P + P A+  EHRRRA  AYEERSR ET+  +STNAGLR+VAEEKEKYRQ+QAE++++ A   XXXXXXXXXXXXXXXXXXXX        +  +             XXXXXXXXXXXX            D +VG  +V    G A    E+ D G  +                    A A  PSVDSQE    GRR AEEA+LAYE+N+RR  ++LA+QNAG R+V+EE+EKYRQRQ + IMEGA +         G         G  +P D ET                   +GG      A  ++ +S       + GL+AVRMRLR+SL  K  AG GEGG
Sbjct:   42 FITWLDSTQSQLQAKVAEVSRGAGAGLSPASPAAEDLADYDRRLEILRRKRDDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAIFTPREDGDRVVRRREARGSSRGRNTKDSSQDDSGGVFGGRRRXXXXXXXXXXXXXXXXXXXXXXXXVAQEISSMAGRLKESSVAINQTLRTQTQVLEDTGDAAIQNVGRVKRENARVSERLRKKRAAMFASWCMMITVVATFFATYFLVIMPFEKRRGPFVTARTSAFAQAAEPRERIPSQHEHVATAAGAATAEEIQRRAQEAYRETARRARGRHEGDNAAHRVAREEKEAFRHRQAERMMAANRDRK--AAMKKNSQQKTLEAGTDSVPQHRREEGAEVGQVNTQ----AVRCSAPPPASDEDSSGGAGAFGSXXXXXXXXXGDAKASAGSCTXXXXXXXDDDVTAAAAEXXXXXXXXXDSAEAAGXXXXXXXXXXXAAADTTDQTVP--AVGGTEASAAQPVLDPAASVEEHRRRANQAYEERSRRETENQDSTNAGLRLVAEEKEKYRQQQAEKMLQAASERXXXXXXXXXXXXXXXXXXXXXXXXXAALQPRALGATGGETARDDNXXXXXXXXXXXX------------DERVGGGQVDRAGGPAAEVAEEADKGSDD--------------------AAALPPSVDSQENHQAGRRRAEEARLAYEQNARRAADSLASQNAGQRLVSEEKEKYRQRQAKKIMEGAARRKQQRHEQGGETSDQLELAGDGSPPDSETGRETADGTIGNPAEDPASGVGGDGXXXGATPAVGSSERGSDQGSGGLDAVRMRLRKSLGSKRGAGGGEGG 848
[Close]
BLAST of mRNA_L-elsbetiae_contig1332.2569.1 vs. uniprot
Match: D7FHQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ2_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.850e-81
Identity = 448/862 (51.97%), Postives = 511/862 (59.28%), Query Frame = 1 
Query:    1 FITTLGSTQSQLQATVAQTSTGT----SPAPPSAEDLTEYDRRLETLRRSRDDLVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEVDEAEADQVAQEISSMAGRLKESSMAINQTLRTQTQVLEDTGDAATQNVDKVKRENVRVAERLRKKRAAMVASWCMMIAVLVTFFATYALVILPFEKRRGPFVSPSNLAFAQASEPTQPVPSQPQLDGSGGGA---EEVRRRSEQALREASQQARSKQQSANASHRVARAEKEXXXXXXXXXXXXXXXDRKTESGNGRDGHAPEI--EAAPQQXXXXXXXXXXGVAQGEEEPELPAGSCSAPLPPSDGDAAAGAVGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXADGSCSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSAGCMPMFVYFGLSVSSPPPPVLPTANEHRRRAQVAYEERSRLETQRMESTNAGLRVVAEEKEKYRQRQAEEIMR------------KARXXXXXXXXXXXXXXXXXXXXXXA--KEGHDEPEDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAGDHQVGSQEVVGDEGIAVPPGEKGDDGGKEKGGAAPAAPGSXXXXSAGEGAGAASPSVDSQELGRRMAEEAKLAYEKNSRRVEENLATQNAGLRVVAEEREKYRQRQTQSIMEGARKXXXXXXXXXGSYPAAELSDGQQTPTDPET-----------------KAIGGSS-------AVDSL----SASATGLEAVRMRLRESLAPKAGDGEGGAREPGH 2433
            FIT+L STQSQLQA VA+ S G     SPA P+AEDL +YDRRLE LRR RD     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +  DEAEADQVAQEISSMAGRLKESS+AINQTLRTQTQVLEDTGDAATQNVD+VKREN RV+ERLRKKRAAM ASWCMMI V+VTFFATY LVI+PFEKRRGPFV+    AFAQA+EP + +PS+     +  GA   EE++RR+++A RE +++AR + +  NA+HRVAR EKE               DRK            E   ++ PQ            V Q        AGSCSAP P S  D++ GAV                    XXXXXXXX   DG  +   XXXXXXXXXXX  XX                    AG        G + +SP  PVL  A EHRRRA  AYEERSR ET+ ++STNAGLR+VAEEKEK++Q+ AE++++            K R     XXXXXXXXXXXX     A    G +   D +XXXXXXXXXXXXXXXXXXXXXXXXXXXXX        D + G  +V    G A    E+ D GG +    A A P S               SVDSQE GRR AEEA+LAYE+N+RR  ++L                 RQRQ + IMEGA +         G        +G  +P D ET                   +GG         AV S     S  + GL+AVRMRLRESL  K G G G     GH
Sbjct:   42 FITSLDSTQSQLQARVAEVSRGAGAGLSPALPTAEDLADYDRRLEILRRKRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE------RAADEAEADQVAQEISSMAGRLKESSVAINQTLRTQTQVLEDTGDAATQNVDRVKRENARVSERLRKKRAAMFASWCMMITVVVTFFATYFLVIVPFEKRRGPFVAARTSAFAQAAEPRERIPSEHDAAATAAGAATAEEIQRRAQEAYRETARRARGRHEGDNAAHRVAREEKEAFRHRQAERMMAANRDRKAAMKKNSQQETLEAGTDSVPQHRQEEGAEEGQVVTQ--------AGSCSAPPPASGEDSSGGAVA------------------LXXXXXXXXPDEDGDATAAAXXXXXXXXXXXAAXX-------------------GAGAA------GAAEASPAQPVLDPAEEHRRRANQAYEERSRRETENLKSTNAGLRLVAEEKEKHQQQXAEKMLQAASERKAMAAAGKVREEAQVXXXXXXXXXXXXALQARAPGSAGGETATDVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDN------DERSGGGQVDRAGGPAAEVAEEADKGGDD----AAALPDS---------------SVDSQEAGRRRAEEARLAYEQNARRAADSLXXXXXXXXXXXXXXXXXRQRQAKKIMEGAARRKQQRHQQGGETSDQLELEGDGSPPDSETGRENADGTIGNPAEEPSSGVGGDGXXXXATPAVGSSGRGSSQGSGGLDAVRMRLRESLGSKRGGGGGETSTNGH 821
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1332.2569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6N4_9PHAE2.140e-8348.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHQ2_ECTSI1.850e-8151.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1332contigL-elsbetiae_contig1332:3867..11577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionVesicle transport protein, Use1
Ec32 orthologEc-07_006290.1
Exons11
Model size3144
Cds size1953
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.972305-UTR-L-elsbetiae_contig1332:3866..43551622815506.972305-UTR-L-elsbetiae_contig1332:3866..4355Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1332 3867..4355 +
1691682931.9254713-UTR-L-elsbetiae_contig1332:3866..43551691682931.9254713-UTR-L-elsbetiae_contig1332:3866..4355Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1332 3867..4355 +
1622815507.146852-UTR-L-elsbetiae_contig1332:10875..115771622815507.146852-UTR-L-elsbetiae_contig1332:10875..11577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1332 10876..11577 +
1691682932.0380938-UTR-L-elsbetiae_contig1332:10875..115771691682932.0380938-UTR-L-elsbetiae_contig1332:10875..11577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1332 10876..11577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.9890318-CDS-L-elsbetiae_contig1332:4355..44181622815506.9890318-CDS-L-elsbetiae_contig1332:4355..4418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 4356..4418 +
1691682931.93493-CDS-L-elsbetiae_contig1332:4355..44181691682931.93493-CDS-L-elsbetiae_contig1332:4355..4418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 4356..4418 +
1622815507.0049894-CDS-L-elsbetiae_contig1332:5255..53841622815507.0049894-CDS-L-elsbetiae_contig1332:5255..5384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 5256..5384 +
1691682931.943905-CDS-L-elsbetiae_contig1332:5255..53841691682931.943905-CDS-L-elsbetiae_contig1332:5255..5384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 5256..5384 +
1622815507.028905-CDS-L-elsbetiae_contig1332:5947..60791622815507.028905-CDS-L-elsbetiae_contig1332:5947..6079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 5948..6079 +
1691682931.953201-CDS-L-elsbetiae_contig1332:5947..60791691682931.953201-CDS-L-elsbetiae_contig1332:5947..6079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 5948..6079 +
1622815507.0412881-CDS-L-elsbetiae_contig1332:6437..65981622815507.0412881-CDS-L-elsbetiae_contig1332:6437..6598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 6438..6598 +
1691682931.9631402-CDS-L-elsbetiae_contig1332:6437..65981691682931.9631402-CDS-L-elsbetiae_contig1332:6437..6598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 6438..6598 +
1622815507.0539176-CDS-L-elsbetiae_contig1332:7741..81481622815507.0539176-CDS-L-elsbetiae_contig1332:7741..8148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 7742..8148 +
1691682931.9726443-CDS-L-elsbetiae_contig1332:7741..81481691682931.9726443-CDS-L-elsbetiae_contig1332:7741..8148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 7742..8148 +
1622815507.0668628-CDS-L-elsbetiae_contig1332:8259..83341622815507.0668628-CDS-L-elsbetiae_contig1332:8259..8334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 8260..8334 +
1691682931.9821148-CDS-L-elsbetiae_contig1332:8259..83341691682931.9821148-CDS-L-elsbetiae_contig1332:8259..8334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 8260..8334 +
1622815507.0813026-CDS-L-elsbetiae_contig1332:8540..85751622815507.0813026-CDS-L-elsbetiae_contig1332:8540..8575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 8541..8575 +
1691682931.9920707-CDS-L-elsbetiae_contig1332:8540..85751691682931.9920707-CDS-L-elsbetiae_contig1332:8540..8575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 8541..8575 +
1622815507.0951035-CDS-L-elsbetiae_contig1332:8594..87251622815507.0951035-CDS-L-elsbetiae_contig1332:8594..8725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 8595..8725 +
1691682932.0019288-CDS-L-elsbetiae_contig1332:8594..87251691682932.0019288-CDS-L-elsbetiae_contig1332:8594..8725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 8595..8725 +
1622815507.1098645-CDS-L-elsbetiae_contig1332:9060..94811622815507.1098645-CDS-L-elsbetiae_contig1332:9060..9481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 9061..9481 +
1691682932.0114486-CDS-L-elsbetiae_contig1332:9060..94811691682932.0114486-CDS-L-elsbetiae_contig1332:9060..9481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 9061..9481 +
1622815507.1225796-CDS-L-elsbetiae_contig1332:9821..99581622815507.1225796-CDS-L-elsbetiae_contig1332:9821..9958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 9822..9958 +
1691682932.0209177-CDS-L-elsbetiae_contig1332:9821..99581691682932.0209177-CDS-L-elsbetiae_contig1332:9821..9958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 9822..9958 +
1622815507.1371036-CDS-L-elsbetiae_contig1332:10613..108751622815507.1371036-CDS-L-elsbetiae_contig1332:10613..10875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 10614..10875 +
1691682932.0294986-CDS-L-elsbetiae_contig1332:10613..108751691682932.0294986-CDS-L-elsbetiae_contig1332:10613..10875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1332 10614..10875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1332.2569.1prot_L-elsbetiae_contig1332.2569.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1332 4356..10875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1332.2569.1

>prot_L-elsbetiae_contig1332.2569.1 ID=prot_L-elsbetiae_contig1332.2569.1|Name=mRNA_L-elsbetiae_contig1332.2569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=651bp
MAGRLKESSMAINQTLRTQTQVLEDTGDAATQNVDKVKRENVRVAERLRK
KRAAMVASWCMMIAVLVTFFATYALVILPFEKRRGPFVSPSNLAFAQASE
PTQPVPSQPQLDGSGGGAEEVRRRSEQALREASQQARSKQQSANASHRVA
RAEKEASRQRQAERRRANARDRKTESGNGRDGHAPEIEAAPQQQKQQQQQ
QQHGVAQGEEEPELPAGSCSAPLPPSDGDAAAGAVGSCSAPPADAAAAAA
SAAAASAAAASAAAAADGSCSIPPSDDDAALPAVGSCGAPPPSDDDDAAA
AAAAEASVSAGCMPMFVYFGLSVSSPPPPVLPTANEHRRRAQVAYEERSR
LETQRMESTNAGLRVVAEEKEKYRQRQAEEIMRKARERQQTTTTTTTTTE
GSKSTTERAKEGHDEPEDASRAGAVGGSSEATRAAATATVADEKPGGGGG
GGAGDAGDHQVGSQEVVGDEGIAVPPGEKGDDGGKEKGGAAPAAPGSAAA
GSAGEGAGAASPSVDSQELGRRMAEEAKLAYEKNSRRVEENLATQNAGLR
VVAEEREKYRQRQTQSIMEGARKRKQQQQQQQGSYPAAELSDGQQTPTDP
ETKAIGGSSAVDSLSASATGLEAVRMRLRESLAPKAGDGEGGAREPGHEE
*
back to top

mRNA from alignment at L-elsbetiae_contig1332:3867..11577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1332.2569.1 ID=mRNA_L-elsbetiae_contig1332.2569.1|Name=mRNA_L-elsbetiae_contig1332.2569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7711bp|location=Sequence derived from alignment at L-elsbetiae_contig1332:3867..11577+ (Laminarionema elsbetiae ELsaHSoW15)
TTCATCACAACACTGGGCAGCACCCAGTCCCAGCTGCAAGCAACAGTGGC
ACAGACAAGCACCGGCACCTCGCCAGCACCGCCTTCTGCGGAAGACTTGA
CGGAGTACGATCGCCGTCTGGAAACCCTTCGACGCAGCCGTGACGACCTA
GTATCGGCCGCGGCGGCGGCTGCTGCTGCCGCTTCAGCCAAGTGCGCCGC
AGAGTATAACAGTAGTAGTAATCCCTCTCCGCAGCAGCAGCAGCAGCAGC
AGCACGCGAGTAGAGCCGCCGCGGCCCAGCAAGACGAAGCTGGTGGTGCC
GGGAGGACAGCAGCCAAGCTCACGAGCCCTCAAGCCTCTTCGCCTCGCAG
AAGCCAAAGCAGCAGCAACAAAGCCGGCGGCGGCGGCGGCGGCGTGTTTG
GTGGGCGGCGGGCGGCGGGCGGGGGTGAGGGTGGGGGGCAAGAGGTGGAT
GAGGCCGAGGCTGACCAGGTGGCCCAGGAAATCTCGAGTATGGCCGGGCG
GCTGAAGGAATCTAGCATGGCCATCAACCAGACCCTCAGGACGCAGACAC
AGGTAGGAACAGGATACACAGGCATGGACAGGGCGGGTTTCGGGGGAAAC
GCACAGTAGATATACACTAGATAAACTACTTACATACGATGCCTCTTTTT
TTCTCTTTTCAGCGACTTTTCGCTGGTATTTTTCTGTTTTCCTTCGGTTT
CCTTCGATCTCTCGTGAGAAACACGCACACCAGTGCTTTCTGCTGCCGGC
GCACCATATCTCGGAGAGGGTTAAAGCATGAGGTATGTCTTCTGCGAGTC
TTCTCCACCACCGCAACACCCCGGAAGTCGATTTTGATCTGACCGCTTAT
CAGTCAAACGCAGTGTCCCTGCAGTGCACATATCTACTTTGACAGTTTGT
GTTCTCCCTTCGAAGTTGACAGCAATCTAGGTGGGTGTCTTTTAATTACT
GTATTGTTATTTTTGGTTTTCGGGAGGGGATGGGATCATGGTGGGGAAGT
TTCCCCAAGAAGAAAAGCTATTTCCGTGTGTGTGCCGCATGATCCTACAG
CAGTAGGCAGAGGAGCGGGCGGCTCAACCTTTCCATTGCTGTTCTCCGCG
TGTCTGCACCGTCGCAAGCGATGGCACACGCTGGTGTAACGGACGGTACC
AGAGTGTGCGTGGTTTGATTTTTTACGATGTGACCCGCCACCCACCTGCT
TGCTCACTACTCGACGTGCAAGCACGCACGCATGCAGGGTTACTTTGCAA
GTGCGACGAGTTCTCTAACCGTGTATCTGTCGGCGATATTGAGTCGGAAG
TGAGAGGAACGACAAGCAGCCAGCCGCCCTGAAACAAGCCAATAGCGCGC
ACGTGTGTCTGTGGCGGTGTGTTTTTTCCCTCTCGCCAGGTGCTGGAGGA
CACGGGAGATGCAGCCACCCAGAATGTCGACAAGGTCAAGAGGGAAAACG
TGCGGGTGGCGGAGCGGCTGCGAAAAAAGAGAGCCGCGATGGTTGCCTCG
TGGTGCATGATGATCGCGGTGAGCCAGCCTTCAGCAGCACAAGTGCATGG
CAACCAATAATAGCCGCATCTTCTCTTGCATGAAGGAAAGGTAGGTAGCA
CCATTCAGGAGGGGCGGGCGGGGGACCGCCTACGCAAGAAAATTAACTTT
ATATGGGAAATAGAGTAAGGGGCTCCGTAACGCTAACCCTAACCCTAACA
CCCAGAACCAAAAACACATTAAGCAAACATACTGGATAAAGTATGGAAAT
CGGGGAAAAAACACCTGCGTAGGCTACCGCGGGCGGAGCTCTCTGTCTCA
ACTGTAAAATGTCCGCTCCCGGTAGGGCGCTGTGGTCGCCGCACGCCGAA
AGACAAGTACGATCAGTGCGGCCGCCATTCCGGATGGACTGCCGAGGTTA
GTGCTCATGCTCGAGCAGTGCTTGATGAACGATCGCTTGTGAAGATTTAC
CTCTATGCTGCCGATGTTGTGCGACTCATGCTCACGGCGGTGATGCCGTG
CGGCAGCGTGTTGTTATATTTCTTGTTTTGTTGTAGGTGCGTGTTTTGAT
TTCGGTTTCCTCGTCCACCTGTACCCGCCAGGTGTTGGTGACTTTCTTCG
CTACGTACGCCCTGGTGATACTGCCGTTCGAGAAGAGACGAGGCCCTTTC
GTCTCCCCCAGTAACCTGGCCTTCGCACAGGCGTCGGAGCCGACTCAGCC
CGTCCCCTCACAGGTTAGATGGACTACACGTTTTTGTTTTTCGGCTGTGG
TTGGGTAGTCTAGTCTGGAGTGGTGCTTGTTTTTGTTCCGCTGTCGTCGT
CTTCGGTGCTGTTGAGGGAGCCCCTCGTCTGATGCTGTGGGAAAATTCCT
TCCCGAAACACCTCGGCCCGGGATTAACTCTTTTGACGACCGCAATAGAG
CAACATCATCCGACCAATTGACGTTACACCGTTACACCTTCGGCCGGTCG
GCGTGGTTCGAGCGACTACCCGGCCTGAAGTGACGACCGCAATCGAACAG
CGGCACCCAGTAGAGGTTACGCGCGGATTAACTTCGTGTGCTTGAACGAA
TAATACCACGCCCGGCAGCAGCCCCAACTCGACGGCAGCGGTGGTGGAGC
GGAGGAGGTTCGTCGGCGCTCGGAGCAGGCCCTTCGGGAGGCCTCTCAGC
AGGCCCGCAGCAAGCAGCAGAGCGCCAACGCGAGCCACCGCGTCGCCCGG
GCGGAGAAGGAAGCGTCGCGGCAGCGTCAAGCGTGAGTTTTTTTTTTAAA
TAAACAATGAAAATCCAAGATGGAACCTACCCCCCACACTGGAGCAAGGA
CTCGATACGGGGTTCATACAGTATTCCATACAGTAGTGACGTAATATTTG
GTGAAGCGAGTAGAAAAACAACCTAAAATATCAGAAGAGTTCAACATCTC
CCCTGCAAAGATTTGCGAGGTCTTTTTTGTGTTTGTCTTTGGTCTGAAGG
TGTTGCTTGGAGGAGAAACGTCGATGGCATATGCCAATCGTTACGGCGGT
GGATCACGCCCAAACCATGCTCTCCGGGCTGTTGTTGCTGAGGTGACAAT
ATTGCGGCCGCAGAGATAGACGGAGGCTGAAGATTCAATAGCATCTGGTG
TTTGTGCTGTTAAGTGGGCCGCGTGTGTACACGCCCCAAGCTAGCGCTGG
CTCTTGCAAGGAGTAGAATCAGCTCTCCACTTTTTAAGGTACGCATGGCC
GTGAGCGGTGGAAGAACCCCAAGCCAAGCAACAGACGACTCCGCTCCCCC
GCCGAGGAGGCTTAAATTGTATGTACATCGATATTTAAAAGAGAGACGGG
CATCAAAATATATATTTTTTCAATGAGAGACGGGCAAAATATATATTTCA
GATGGCTGGACCTGCCAGCAAGAAGGAAGAGGTATAGCAGTACAATAGCT
GGGAGGAGGAGGAGGAGGAGGCAGCGTGAGAGTTCCGCATGTGGGGCAGG
ATCACGGAAGTGCGTTGTAGAAGTCACCATGCCAGAAGACGAGTTATATT
GGGCGTAATTTACGGAGATTCTGGAGGAGGATGAGGACTCAAGGAAAATA
TACAGGATTGGACGACCTCAAGCTTTTTGCGCGTTTGTTGTTGCGGTTGA
TGAGGTATGTAGCGATAGCAATGGTAATAGTTAGTTTCAGATGGGGATAA
CATATATTCAGATGTCCAAGAAGTTTCTAAAGAAGTGTCCAAAGACCATG
TAGGGCGCCCGCGCGGGTAAGCAGGAGGCACAACGAGGCCCCCATCTCGA
ACTCGGACGGGATACTTCGCATGTGGTGATGTGATCCCACGGACAGTTGA
TTTAAACAAACCCTCACTTAGCCCCCGCTCCCCTCGCGGCGGCCGCGCCT
CCGTTTGTTGGCCCCCTTACAACAGCGAGAGGCGGCGAGCCAATGCCAGG
GACAGAAAGACAGAGAGTGGCAACGGCAGGGACGGGCACGCGCCAGAGAT
TGAAGCCGCACCGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCATG
GCGTGGCGCAGGGAGAGGAGGAACCGGAACTGCCGGCCGGTAGCTGCAGC
GCTCCTCTTCCTCCTTCTGATGGCGATGCCGCTGCTGGTGCTGTTGGAAG
CTGCAGTGCTCCTCCCGCAGATGCTGCTGCCGCTGCTGCTTCTGCTGCCG
CTGCTTCTGCTGCCGCTGCTTCTGCTGCCGCTGCCGCCGATGGCAGCTGC
AGCATTCCTCCTTCTGATGACGACGCTGCTCTTCCTGCTGTCGGGAGCTG
CGGCGCCCCCCCTCCTTCTGATGATGATGATGGTGATGATGATGATGATG
GTGATGCTGATGGTGATGATGATGATGGTGATGATGGTGATGATGGTGAT
GGTGATGATGATGATGATGGTGATGGTGATACGTCCGCCGAAGCGGCCGC
TGCTGCCGCTGCCGAAGCTTCGGTGAGCGCGGGTTGCATGCCCATGTTTG
TCTACTTTGGCCTTTCTGGTATTTTGCATTGCACTTCAAGGCCAGCTGCT
GGCCCTCTTTTCCCCTGCCGTGGCTTACCTTCCCACCCAACTCCTTACAG
CTTTAAGACAAAAGGCGTATCGTACAGACTTCGAAGATCTTTTTTTGCGG
CGCTATTGCTGTGTGCCACGTACATATCTGGTAGGTTGTGGATGTGCCAC
AAGCCCGCCCCCCCTGAAATATAGTGTCCTCCCCCCCCCCCCCCGTACTC
CCGACTGCGGTGTCCCTGCCATTTAAAGAACGAGCACCGACGCAGGGCCC
AGGTGGCGTACGAGGAGCGCTCCAGGCTCGAAACTCAAAGGATGGAGAGC
ACAAACGCCGGTCTACGCGTGGTGGCTGAGGAGAAGGAAAAGTACCGGCA
GCGGCAAGCGTGAGTCCTCCCCCCCCTCCCGCTGGCCCCTCCCGCTGTCT
TTACCCCTGAAGGATCCAAGCAAGATGGGCATCAAATTCCAAATTCATGC
ATACCACTGAGTGCCGACCAATAATCCACGCACGTCTAGTTTCTAATTTC
CGTATGTATGCGCATGCGGCCTTTTGGGACCCTGACAGTAGCATTGCCGT
AGATATTCCCGCTGGACTTTGTGGCGAATCGCCGCCCACCCACCCACCCA
CCCGGCGTCTGCTCCAATATACGCCGCACGCCGTTCGCCTCCATTTTATT
TTTGTATATTGTTGATGGACACACACACACACACACACATGTAGCGAGGA
GATAATGCGGAAAGCAAGAGAGCGGCAGCAGACCACCACCACCACCACCA
CCACCACGGAGGGATCGAAATCCACCACCGAGCGAGCCAAGGAGGGGCAC
GACGAGCCCGAAGACGCCTCGAGGGCCGGAGCTGTCGGCGGCTCGTCGGA
GGCAACCAGGGCCGCAGCCACGGCAACTGTCGCCGACGAAAAGCCCGGCG
GCGGCGGCGGCGGGGGCGCCGGAGACGCCGGTGACCACCAAGTCGGGTCT
CAAGAAGTTGTTGGTGATGAGGGGATTGCGGTTCCTCCAGGCGAAAAGGG
AGACGACGGTGGAAAGGAGAAGGGTGGAGCGGCGCCGGCGGCACCGGGCT
CTGCCGCTGCTGGTAGTGCTGGCGAAGGGGCCGGCGCGGCCTCGCCATCT
GTGGACTCCCAAGAGGTGCGGTGCGACGAAGCGTGGCGTTCTCGTCCGCC
TTCCACCTCCCTTCGCCTAGAGAGTAGCTGTCCCTCGCGGCCACGGTCGG
TTCGAGCTCAGTATGTTGTGTGTCGCGAGTTTTGTACAAGCCGGTCTCCT
GCTGCTTCATGCGCTTGCTGGTTGATCGTGTGACGCTCGTCCCCCCGCTA
CATACGTCGCGTTATAGGAGTAGATGGGGTAACATATGATGCCAAGGTCC
GACGTTGTTGTCGTGAAAGCTACATAGGGTAGAATCAATCATCCCCTTTC
GTACTCCCCCCCAATCCTGCCCCCCTTTTTTTTTATGCCCGCCCTTACTT
CTCAGCTGGGGCGTCGAATGGCAGAGGAGGCTAAGCTAGCGTACGAGAAG
AATTCGCGCCGCGTGGAGGAAAACTTGGCGACCCAGAATGCCGGGCTGCG
GGTCGTTGCGGAAGAAAGGGAGAAGTACCGCCAGCGGCAGACGTGAGTGT
TCTATGCTGCCTCCTGCACGAGAGATGTTGGAATTTTCCAGGAGTTTTCG
ACGTATTTAGGCGTTTCGTGGGCTACATACATACGGCGATGGCCTCGATG
CGACCAGACGGCATCACAACCGTTCCCGGTGGCTTGGCTGGGTGGGAAGG
CACCTAGACCGGCACCGCGTGGGTGCCGGCCGCTCTGTGTCGCGGCTTGG
GCTTGAGCGCGGCTGACAGTCAGTGCGTTTTAGGATTGTAGGGGCCATCA
ACGGTACAATAGAGCAGCAAATGGGTCTCCTGCCTGCTTTCTCCCCCTGT
CCGCACCCCTTCCATTTTTTTTTCATCCGTCGTTTCCGAAACCTCATTCT
CAGCGAATCTAGTTGTAAATACGATGCAGTTCGAAATTGGTTTTCCCTCC
TAGCCTTCCACGTCTGCGCTAAAGGCGTGCACGCTCCCGACATGAATACC
GTGCGACCTAAATTGCCAACTTGCCTCGGGCCAGTACAGAGTACAAGGAG
CCGAGCGAACAGGAAATATATAGATATGGCGTGCCGGGGCACAAGTTTTT
GAAACTTGGCGTGTGGTACATATGGCTTCAGTTTTAGCGTACAAAGATTC
CGTTCTTGCTCTTGTCATGCCTTGGCTCTCCTGACGACCGGCTCCAGGCA
AAGCATCATGGAAGGTGCAAGGAAAAGAAAGCAGCAGCAGCAGCAGCAAC
AGGGCAGTTATCCAGCAGCGGAGCTAAGCGATGGCCAGCAAACGCCAACC
GACCCAGAAACCAAGGCAATCGGGGGAAGTTCGGCCGTCGACTCCCTCTC
GGCTTCCGCCACCGGGCTGGAGGCTGTTCGCATGCGGCTACGCGAGAGCC
TGGCGCCCAAAGCTGGGGATGGTGAAGGGGGGGCACGCGAACCAGGGCAC
GAGGAGTGATTTGTGATGCATCAGTTCCCAAGTGCCATCTTGGGTTTTGC
TGTATGAGCTATCCTGCTGTAGTATCGACTCCCTTTCTACACAGAAGTTG
TATGTTTGTTTCCTGTTTCTCGGGGAAAATGGGGGGGGGACGGGGGGGCG
TTTCGTGTCCCTTTTTCTTACGGACGTGTTGTTGGATAAATCTGGGATAC
ATGCGTATCTTTAGTAGAATTAGTGTGACGAGATAGTTCCGTGCCTTGGT
CTCGCAAGACAATTTTCTGGGTAAACTTTCTGTGAGGCTTTCCTGCGTGG
CGACCGCGTGCGCTCTGGTCGCAACGCGTGTTGGGGGGGCGTGATCCCCC
CCGAAGCTGATCACGTACCACCGCTTCTACATGGGAGAGACGCAAGCGAT
CTCGCGAGCGATGATCTTTTTCTTTTTGAAAGAAAGAGGTTGCATTCGAT
ATATCTATTGCATCCGGTAAGAAGATCTCTTTTTGTCCTGAGTTTATCTA
CATGGACTTCACACGTACACTAGAAATGTCATGATGTACATAGGTCCTTT
TTTATTTTCTCAGTAACCTTTTTAGGTAAGTTAGCTTGTGACCACGGAAA
TTGACCGTGTTGAGTGACAGGATGAGTACAGAGATTGATGTTGAGACAGA
AGGAGGTACTGGATAGAGACGAGACCGGGATGGTTTTTTAATGTGAAGAC
AACAACAACAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1332:3867..11577+

>mRNA_L-elsbetiae_contig1332.2569.1 ID=mRNA_L-elsbetiae_contig1332.2569.1|Name=mRNA_L-elsbetiae_contig1332.2569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3906bp|location=Sequence derived from alignment at L-elsbetiae_contig1332:3867..11577+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGGCGGCTGAAGGAATCTAGCATGGCCATCAACCAGACCCTCAG
GACGCAGACACAGATGGCCGGGCGGCTGAAGGAATCTAGCATGGCCATCA
ACCAGACCCTCAGGACGCAGACACAGGTGCTGGAGGACACGGGAGATGCA
GCCACCCAGAATGTCGACAAGGTCAAGAGGGAAAACGTGCGGGTGGCGGA
GCGGCTGCGAAAAAAGAGAGCCGCGATGGTTGCCTCGTGGTGCATGATGA
TCGCGGTGCTGGAGGACACGGGAGATGCAGCCACCCAGAATGTCGACAAG
GTCAAGAGGGAAAACGTGCGGGTGGCGGAGCGGCTGCGAAAAAAGAGAGC
CGCGATGGTTGCCTCGTGGTGCATGATGATCGCGGTGTTGGTGACTTTCT
TCGCTACGTACGCCCTGGTGATACTGCCGTTCGAGAAGAGACGAGGCCCT
TTCGTCTCCCCCAGTAACCTGGCCTTCGCACAGGCGTCGGAGCCGACTCA
GCCCGTCCCCTCACAGGTGTTGGTGACTTTCTTCGCTACGTACGCCCTGG
TGATACTGCCGTTCGAGAAGAGACGAGGCCCTTTCGTCTCCCCCAGTAAC
CTGGCCTTCGCACAGGCGTCGGAGCCGACTCAGCCCGTCCCCTCACAGCC
CCAACTCGACGGCAGCGGTGGTGGAGCGGAGGAGGTTCGTCGGCGCTCGG
AGCAGGCCCTTCGGGAGGCCTCTCAGCAGGCCCGCAGCAAGCAGCAGAGC
GCCAACGCGAGCCACCGCGTCGCCCGGGCGGAGAAGGAAGCGTCGCGGCA
GCGTCAAGCCCCCAACTCGACGGCAGCGGTGGTGGAGCGGAGGAGGTTCG
TCGGCGCTCGGAGCAGGCCCTTCGGGAGGCCTCTCAGCAGGCCCGCAGCA
AGCAGCAGAGCGCCAACGCGAGCCACCGCGTCGCCCGGGCGGAGAAGGAA
GCGTCGCGGCAGCGTCAAGCCGAGAGGCGGCGAGCCAATGCCAGGGACAG
AAAGACAGAGAGTGGCAACGGCAGGGACGGGCACGCGCCAGAGATTGAAG
CCGCACCGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCATGGCGTG
GCGCAGGGAGAGGAGGAACCGGAACTGCCGGCCGGTAGCTGCAGCGCTCC
TCTTCCTCCTTCTGATGGCGATGCCGCTGCTGGTGCTGTTGGAAGCTGCA
GTGCTCCTCCCGCAGATGCTGCTGCCGCTGCTGCTTCTGCTGCCGCTGCT
TCTGCTGCCGCTGCTTCTGCTGCCGCTGCCGCCGATGGCAGCTGCAGCAT
TCCTCCTTCTGATGACGACGCTGCTCTTCCTGCTGTCGGGAGCTGCGGCG
CCCCCCCTCCTTCTGATGATGATGATGCGAGAGGCGGCGAGCCAATGCCA
GGGACAGAAAGACAGAGAGTGGCAACGGCAGGGACGGGCACGCGCCAGAG
ATTGAAGCCGCACCGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCA
TGGCGTGGCGCAGGGAGAGGAGGAACCGGAACTGCCGGCCGGTAGCTGCA
GCGCTCCTCTTCCTCCTTCTGATGGCGATGCCGCTGCTGGTGCTGTTGGA
AGCTGCAGTGCTCCTCCCGCAGATGCTGCTGCCGCTGCTGCTTCTGCTGC
CGCTGCTTCTGCTGCCGCTGCTTCTGCTGCCGCTGCCGCCGATGGCAGCT
GCAGCATTCCTCCTTCTGATGACGACGCTGCTCTTCCTGCTGTCGGGAGC
TGCGGCGCCCCCCCTCCTTCTGATGATGATGATGCGGCCGCTGCTGCCGC
TGCCGAAGCTTCGGTGAGCGCGGGTTGCATGCCCATGTTTGTCTACTTTG
GCCTTTCTGCGGCCGCTGCTGCCGCTGCCGAAGCTTCGGTGAGCGCGGGT
TGCATGCCCATGTTTGTCTACTTTGGCCTTTCTGTGTCCTCCCCCCCCCC
CCCCGTACTCCCGACTGCGTGTCCTCCCCCCCCCCCCCCGTACTCCCGAC
TGCGAACGAGCACCGACGCAGGGCCCAGGTGGCGTACGAGGAGCGCTCCA
GGCTCGAAACTCAAAGGATGGAGAGCACAAACGCCGGTCTACGCGTGGTG
GCTGAGGAGAAGGAAAAGTACCGGCAGCGGCAAGCAACGAGCACCGACGC
AGGGCCCAGGTGGCGTACGAGGAGCGCTCCAGGCTCGAAACTCAAAGGAT
GGAGAGCACAAACGCCGGTCTACGCGTGGTGGCTGAGGAGAAGGAAAAGT
ACCGGCAGCGGCAAGCCGAGGAGATAATGCGGAAAGCAAGAGAGCGGCAG
CAGACCACCACCACCACCACCACCACCACGGAGGGATCGAAATCCACCAC
CGAGCGAGCCAAGGAGGGGCACGACGAGCCCGAAGACGCCTCGAGGGCCG
GAGCTGTCGGCGGCTCGTCGGAGGCAACCAGGGCCGCAGCCACGGCAACT
GTCGCCGACGAAAAGCCCGGCGGCGGCGGCGGCGGGGGCGCCGGAGACGC
CGGTGACCACCAAGTCGGGTCTCAAGAAGTTGTTGGTGATGAGGGGATTG
CGGTTCCTCCAGGCGAAAAGGGAGACGACGGTGGAAAGGAGAAGGGTGGA
GCGGCGCCGGCGGCACCGGGCTCTGCCGCTGCTGGTAGTGCTGGCGAAGG
GGCCGGCGCGGCCTCGCCATCTGTGGACTCCCAAGAGCGAGGAGATAATG
CGGAAAGCAAGAGAGCGGCAGCAGACCACCACCACCACCACCACCACCAC
GGAGGGATCGAAATCCACCACCGAGCGAGCCAAGGAGGGGCACGACGAGC
CCGAAGACGCCTCGAGGGCCGGAGCTGTCGGCGGCTCGTCGGAGGCAACC
AGGGCCGCAGCCACGGCAACTGTCGCCGACGAAAAGCCCGGCGGCGGCGG
CGGCGGGGGCGCCGGAGACGCCGGTGACCACCAAGTCGGGTCTCAAGAAG
TTGTTGGTGATGAGGGGATTGCGGTTCCTCCAGGCGAAAAGGGAGACGAC
GGTGGAAAGGAGAAGGGTGGAGCGGCGCCGGCGGCACCGGGCTCTGCCGC
TGCTGGTAGTGCTGGCGAAGGGGCCGGCGCGGCCTCGCCATCTGTGGACT
CCCAAGAGCTGGGGCGTCGAATGGCAGAGGAGGCTAAGCTAGCGTACGAG
AAGAATTCGCGCCGCGTGGAGGAAAACTTGGCGACCCAGAATGCCGGGCT
GCGGGTCGTTGCGGAAGAAAGGGAGAAGTACCGCCAGCGGCAGACCTGGG
GCGTCGAATGGCAGAGGAGGCTAAGCTAGCGTACGAGAAGAATTCGCGCC
GCGTGGAGGAAAACTTGGCGACCCAGAATGCCGGGCTGCGGGTCGTTGCG
GAAGAAAGGGAGAAGTACCGCCAGCGGCAGACGCAAAGCATCATGGAAGG
TGCAAGGAAAAGAAAGCAGCAGCAGCAGCAGCAACAGGGCAGTTATCCAG
CAGCGGAGCTAAGCGATGGCCAGCAAACGCCAACCGACCCAGAAACCAAG
GCAATCGGGGGAAGTTCGGCCGTCGACTCCCTCTCGGCTTCCGCCACCGG
GCTGGAGGCTGTTCGCATGCGGCTACGCGAGAGCCTGGCGCCCAAAGCTG
GGGATGGTGAAGGGGGGGCACGCGAACCAGGGCACGAGGAGTGAGCAAAG
CATCATGGAAGGTGCAAGGAAAAGAAAGCAGCAGCAGCAGCAGCAACAGG
GCAGTTATCCAGCAGCGGAGCTAAGCGATGGCCAGCAAACGCCAACCGAC
CCAGAAACCAAGGCAATCGGGGGAAGTTCGGCCGTCGACTCCCTCTCGGC
TTCCGCCACCGGGCTGGAGGCTGTTCGCATGCGGCTACGCGAGAGCCTGG
CGCCCAAAGCTGGGGATGGTGAAGGGGGGGCACGCGAACCAGGGCACGAG
GAGTGA
back to top