mRNA_L-elsbetiae_contig13314.2566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13314.2566.1
Unique NamemRNA_L-elsbetiae_contig13314.2566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13314.2566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13314contigL-elsbetiae_contig13314:4095..4688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13314.2566.1prot_L-elsbetiae_contig13314.2566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13314 4120..4434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.824429-UTR-L-elsbetiae_contig13314:4094..41191622815506.824429-UTR-L-elsbetiae_contig13314:4094..4119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13314 4095..4119 +
1691682931.836377-UTR-L-elsbetiae_contig13314:4094..41191691682931.836377-UTR-L-elsbetiae_contig13314:4094..4119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13314 4095..4119 +
1622815506.8534079-UTR-L-elsbetiae_contig13314:4434..46881622815506.8534079-UTR-L-elsbetiae_contig13314:4434..4688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13314 4435..4688 +
1691682931.8568165-UTR-L-elsbetiae_contig13314:4434..46881691682931.8568165-UTR-L-elsbetiae_contig13314:4434..4688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13314 4435..4688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.8378084-CDS-L-elsbetiae_contig13314:4119..44341622815506.8378084-CDS-L-elsbetiae_contig13314:4119..4434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13314 4120..4434 +
1691682931.8473327-CDS-L-elsbetiae_contig13314:4119..44341691682931.8473327-CDS-L-elsbetiae_contig13314:4119..4434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13314 4120..4434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13314.2566.1

>prot_L-elsbetiae_contig13314.2566.1 ID=prot_L-elsbetiae_contig13314.2566.1|Name=mRNA_L-elsbetiae_contig13314.2566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MFRPKRQRGFGPHRPAFPQQYSPRIISAAVSCTPGPVCVNPHQHLPVWAS
TFHCTCTSSPLVLVPSTSVSRLLFLSLCFCFSRAFHLSIALDADIRCHFT
PWWK*
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mRNA from alignment at L-elsbetiae_contig13314:4095..4688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13314.2566.1 ID=mRNA_L-elsbetiae_contig13314.2566.1|Name=mRNA_L-elsbetiae_contig13314.2566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig13314:4095..4688+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCGGTGTAGGTCTGTTTAGAATTATGTTTCGGCCGAAACGGCAGAGAG
GTTTCGGTCCCCACAGGCCAGCATTTCCCCAGCAATACTCTCCGAGAATT
ATCTCTGCCGCGGTCTCCTGCACTCCGGGGCCTGTTTGTGTCAACCCCCA
TCAGCACCTCCCCGTTTGGGCTTCAACCTTTCATTGCACGTGCACGTCAA
GCCCTCTCGTGCTCGTCCCCTCCACTTCTGTTTCTCGTCTACTCTTTCTC
TCTCTCTGTTTCTGTTTTTCTCGCGCGTTCCATTTGTCCATCGCTCTCGA
TGCGGACATCCGTTGCCATTTTACCCCGTGGTGGAAATGAATCCGTGAAT
CTAAAAATTGCCCGCTGCGAATCTGTGTTGGTATTCGCTCCACTCTCTGT
CCACAAATCATCTACAATCAATAGCCAAGTATGAAACACTTTTCTCCCTC
TCTGCTTGTTTGCATTTATTGGGAAGGCACCCTCACTCAGGCGGTGTGCT
GTTCTGTCAGAGACCCCCTTCTTGAGGTTTTCAGTTTTGCAAAGAAAATT
GGTATAGACTGCCCGGTAGGCGTGTTTTGATGCGCACCACGTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13314:4095..4688+

>mRNA_L-elsbetiae_contig13314.2566.1 ID=mRNA_L-elsbetiae_contig13314.2566.1|Name=mRNA_L-elsbetiae_contig13314.2566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig13314:4095..4688+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCGGCCGAAACGGCAGAGAGGTTTCGGTCCCCACAGGCCAGCATT
TCCCCAGCAATACTCTCCGAGAATTATCTCTGCCGCGGTCTCCTGCACTC
CGGGGCCTGTTTGTGTCAACCCCCATCAGCACCTCCCCGTTTGGGCTTCA
ACCTTTCATTGCACGTGCACGTCAAGCCCTCTCGTGCTCGTCCCCTCCAC
TTCTGTTTCTCGTCTACTCTTTCTCTCTCTCTGTTTCTGTTTTTCTCGCG
CGTTCCATTTGTCCATCGCTCTCGATGCGGACATCCGTTGCCATTTTACC
CCGTGGTGGAAATGAATGTTTCGGCCGAAACGGCAGAGAGGTTTCGGTCC
CCACAGGCCAGCATTTCCCCAGCAATACTCTCCGAGAATTATCTCTGCCG
CGGTCTCCTGCACTCCGGGGCCTGTTTGTGTCAACCCCCATCAGCACCTC
CCCGTTTGGGCTTCAACCTTTCATTGCACGTGCACGTCAAGCCCTCTCGT
GCTCGTCCCCTCCACTTCTGTTTCTCGTCTACTCTTTCTCTCTCTCTGTT
TCTGTTTTTCTCGCGCGTTCCATTTGTCCATCGCTCTCGATGCGGACATC
CGTTGCCATTTTACCCCGTGGTGGAAATGA
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