mRNA_L-elsbetiae_contig133.2557.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig133.2557.1
Unique NamemRNA_L-elsbetiae_contig133.2557.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig133.2557.1 vs. uniprot
Match: A0A6H5KKF3_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKF3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.040e-29
Identity = 70/134 (52.24%), Postives = 85/134 (63.43%), Query Frame = 2 
Query:    2 PEQG-AGLWKLFPVLMVFVGIVVGILWDQR--ATDGAIGEAKAGSSKEDALDARSASAAAAVKPKAPLSRSLHSIDVDGPGCGAQAFLSPTHKVPGFHLACVEQQPG-----GRAVSVTLFPLGQGAGNQTLVV 379
            PEQ  AGLW+LFP++ V +GIVVGILWD    AT    GE    S+K +A              K P+SRSLH++DV GPGCGA  +LSPTH V GFHLAC+E++ G     G  VSVTLF  G+G GNQTL +
Sbjct:   26 PEQETAGLWRLFPLVAVAIGIVVGILWDPSTPATGETAGEVTTDSAKTNA--------------KPPISRSLHAVDVSGPGCGAHRYLSPTHGVSGFHLACIEEEAGSSGGRGGVVSVTLFRDGRGEGNQTLAL 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig133.2557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKF3_9PHAE5.040e-2952.24Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig133contigL-elsbetiae_contig133:51839..54049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue3.7e-19
Seed eggNOG ortholog2880.D8LI73
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionprolyl 4-hydroxylase alpha-1 subunit precursor-like protein
Ec32 orthologEc-14_003410.1
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size638
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig133.2557.1prot_L-elsbetiae_contig133.2557.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig133 51897..54006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.6562738-UTR-L-elsbetiae_contig133:51838..518961622815505.6562738-UTR-L-elsbetiae_contig133:51838..51896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig133 51839..51896 -
1691682931.291042-UTR-L-elsbetiae_contig133:51838..518961691682931.291042-UTR-L-elsbetiae_contig133:51838..51896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig133 51839..51896 -
1622815505.7102518-UTR-L-elsbetiae_contig133:54006..540491622815505.7102518-UTR-L-elsbetiae_contig133:54006..54049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig133 54007..54049 -
1691682931.319755-UTR-L-elsbetiae_contig133:54006..540491691682931.319755-UTR-L-elsbetiae_contig133:54006..54049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig133 54007..54049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.6778257-CDS-L-elsbetiae_contig133:51896..523361622815505.6778257-CDS-L-elsbetiae_contig133:51896..52336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig133 51897..52336 -
1691682931.3026168-CDS-L-elsbetiae_contig133:51896..523361691682931.3026168-CDS-L-elsbetiae_contig133:51896..52336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig133 51897..52336 -
1622815505.6959045-CDS-L-elsbetiae_contig133:53909..540061622815505.6959045-CDS-L-elsbetiae_contig133:53909..54006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig133 53910..54006 -
1691682931.3110387-CDS-L-elsbetiae_contig133:53909..540061691682931.3110387-CDS-L-elsbetiae_contig133:53909..54006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig133 53910..54006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig133.2557.1

>prot_L-elsbetiae_contig133.2557.1 ID=prot_L-elsbetiae_contig133.2557.1|Name=mRNA_L-elsbetiae_contig133.2557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MVFVGIVVGILWDQRATDGAIGEAKAGSSKEDALDARSASAAAAVKPKAP
LSRSLHSIDVDGPGCGAQAFLSPTHKVPGFHLACVEQQPGGRAVSVTLFP
LGQGAGNQTLVVPMTGEAEEGPKSARAVLFVRHSRKKKKGVPLLLVSLAA
AGGASHPLLVLSVGSPEYLAGGPVVVWH*
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mRNA from alignment at L-elsbetiae_contig133:51839..54049-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig133.2557.1 ID=mRNA_L-elsbetiae_contig133.2557.1|Name=mRNA_L-elsbetiae_contig133.2557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2211bp|location=Sequence derived from alignment at L-elsbetiae_contig133:51839..54049- (Laminarionema elsbetiae ELsaHSoW15)
GCCCGAACAGGGAGCCGGGCTGTGGAAACTGTTCCCTGTCCTAATGGTTT
TTGTTGGGATTGTCGTCGGCATCCTGTGGGACCAGCGAGCCACGGACGGG
GCAATAGGAGAGGCGAAGGCGGGCTCTTCAAAAGAGGACGGTGAGACACA
TTGTTCGAACGCGAAGTCTGACTTGTTTTACCTGCTGTGCTTTTCAGTTT
TGTTCACAATCTGTGTTCATTTTGAAATGTTCTTTGCTGAGTGTTTGGTC
CGGGAAGTGTTCAACGTCCGGGTGGAGCGCCGGGGTAGCTCTCTCTCTCT
CTCTTCGCATCACATCGCGGGTCTACCAAGATGAAAAGGTACCGATCACC
AGAGTTACCTCAGTTAAAGACCTGCCCTGTGCCTGCCTCCTGTTTGCTTG
GAAGGTTCTTGTCCAGCCCTGTCCGCTCTCCTGGACCGTCGTCCAACCGC
ACCCTGTCCCTGTCTACATCATAGATAGATTCACGCCGCGGCACCTTTAG
ATAGAGCCTGTTGACGCCTCCTGCACGATGCATACCAACGTGCACATACC
AGTTCAGCCCTTCCCAGAAGAGCTTGGAAACCAGTAGCGTAACGGGCACT
GCAGTAATCACAGTAAAATAGAGCGGGTGAGAGGCGATGCTTCGGGATTT
CGATTTCAGGGGACGAAACGAAACTTCCTCTGGCGGGGTGATTCCCACGT
GAAAATCCGTGTGTACTCCTGTTGCTGCACGTTCTCAGAGTGAACTGAAA
AGGCACTAGCTAGCTGCTGTAGGTGTGCAGACATGACGATCGCAGGGGGT
ATGCGACGGAGTAACTCGAGAAATTGTGTTTATTACCCCGCGTCCGTCTT
CTCTCTTCTCGTAAGTTAGCGTAATGCTCGGCTCTCTCTGGTGTACAATA
GGGTGGTTATGCTGCGCGTGAGTGTGTCCTTGTGCATATATATGCCTCGT
TAATTGGGTGCACACAACGTCGGTTTATTTGCATGTGGTGCCGGTCACGC
GTGTGCAAGGTGTTCTGTGTAGCTTCTTGCGTCTAATTTTAATGCGAAAT
ACTAACGACCAGTCGGATACAAGCGAGTGTGAGGTAGACGCAGATACCAG
TACTAGTTTTGAAGGAATTAGATCGGCTCAATAAGTTTTCCAGGGGAAGC
CTAACGTTCCCTGTGAAGAGGACTAGATAGCTCAGAGGGCGATGCCCCGC
CGATTAGGTCTCGGGGTCTGCGGGGGTAAAAATATTTTCGGGGAAGGGTC
GGCCTAGGATCATGAAAGGACCATCGACGCGTTCTCGCGTTCTCGCGTTC
TCCCTCAGCACTATTTCCTTTTTCTTCACCAATGATTTTTCCAATGTAGT
TGGTTGTGTTCCACACGAATGCTCCGTTTGTTTCGAACGCCGCACAGCTT
TCGTCACCAGAGCAGCTCAGCAGTGGCTGGGTGCGCGAGATGATGTGTAC
CATGCGTGTTGCACTGCGAGTTTTGCTCTCGGCGGCACATCGGGGGGGGC
GGGCAGTAAGAACGCACACCACGCGCCTGCCGTTGCTCTTGTTCGTGTAC
CCCCTCCCATCTTGCACAGCTTGAACGGACGAGTTCATAACCAATCCCTT
GTGATAGTCTCCTTGCATCCCTCACCCCCTCGCTCCCCACACTTGCCCTG
CCCTGTGTACCCCCCCCTACTTCAATTCCCCTCCCGCGCCCCCTTGCCCG
CCTACACGTGTAGCCCTTGACGCACGGTCCGCAAGCGCGGCGGCGGCGGT
GAAACCGAAAGCGCCGCTCTCTCGGTCCCTGCACAGCATCGACGTAGATG
GACCCGGGTGCGGCGCCCAAGCCTTCCTGTCGCCGACGCACAAGGTGCCG
GGCTTCCACCTGGCGTGCGTCGAGCAGCAACCCGGCGGCCGCGCGGTATC
GGTGACGCTGTTCCCGTTGGGCCAGGGCGCGGGAAACCAGACGCTCGTGG
TGCCGATGACGGGGGAGGCGGAGGAGGGGCCCAAGAGCGCAAGGGCGGTT
CTATTTGTACGTCATTCGCGGAAGAAGAAAAAGGGCGTGCCTTTGTTGTT
AGTTTCTTTGGCGGCAGCTGGAGGGGCCAGCCACCCCCTGCTTGTCTTGT
CTGTCGGCTCCCCGGAGTACCTAGCCGGTGGTCCTGTTGTCGTTTGGCAC
TGACTGTGCTTGGTTTTGGCTGTGTACGTGACGGTAACGTAGATGGTGCA
GCAGCGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig133:51839..54049-

>mRNA_L-elsbetiae_contig133.2557.1 ID=mRNA_L-elsbetiae_contig133.2557.1|Name=mRNA_L-elsbetiae_contig133.2557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig133:51839..54049- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTTTGTTGGGATTGTCGTCGGCATCCTGTGGGACCAGCGAGCCAC
GGACGGGGCAATAGGAGAGGCGAAGGCGGGCTCTTCAAAAGAGGACGATG
GTTTTTGTTGGGATTGTCGTCGGCATCCTGTGGGACCAGCGAGCCACGGA
CGGGGCAATAGGAGAGGCGAAGGCGGGCTCTTCAAAAGAGGACGCCCTTG
ACGCACGGTCCGCAAGCGCGGCGGCGGCGGTGAAACCGAAAGCGCCGCTC
TCTCGGTCCCTGCACAGCATCGACGTAGATGGACCCGGGTGCGGCGCCCA
AGCCTTCCTGTCGCCGACGCACAAGGTGCCGGGCTTCCACCTGGCGTGCG
TCGAGCAGCAACCCGGCGGCCGCGCGGTATCGGTGACGCTGTTCCCGTTG
GGCCAGGGCGCGGGAAACCAGACGCTCGTGGTGCCGATGACGGGGGAGGC
GGAGGAGGGGCCCAAGAGCGCAAGGGCGGTTCTATTTGTACGTCATTCGC
GGAAGAAGAAAAAGGGCGTGCCTTTGTTGTTAGTTTCTTTGGCGGCAGCT
GGAGGGGCCAGCCACCCCCTGCTTGTCTTGTCTGTCGGCTCCCCGGAGTA
CCTAGCCGGTGGTCCTGTTGTCGTTTGGCACTGACCCTTGACGCACGGTC
CGCAAGCGCGGCGGCGGCGGTGAAACCGAAAGCGCCGCTCTCTCGGTCCC
TGCACAGCATCGACGTAGATGGACCCGGGTGCGGCGCCCAAGCCTTCCTG
TCGCCGACGCACAAGGTGCCGGGCTTCCACCTGGCGTGCGTCGAGCAGCA
ACCCGGCGGCCGCGCGGTATCGGTGACGCTGTTCCCGTTGGGCCAGGGCG
CGGGAAACCAGACGCTCGTGGTGCCGATGACGGGGGAGGCGGAGGAGGGG
CCCAAGAGCGCAAGGGCGGTTCTATTTGTACGTCATTCGCGGAAGAAGAA
AAAGGGCGTGCCTTTGTTGTTAGTTTCTTTGGCGGCAGCTGGAGGGGCCA
GCCACCCCCTGCTTGTCTTGTCTGTCGGCTCCCCGGAGTACCTAGCCGGT
GGTCCTGTTGTCGTTTGGCACTGA
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