mRNA_L-elsbetiae_contig13284.2547.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13284.2547.1
Unique NamemRNA_L-elsbetiae_contig13284.2547.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13284.2547.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.160e-42
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 1 
Query:    7 PSRPSCPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSG 360
            P   SCPY IP+EEEA  R+ + S  GNVVV+ D +Y RLGNRF ++S SLSLG+CCKS+L+SLPPKD  LAPG FN GI GPR FDFS APDVEGF+  SC   I WGGT AFHL G
Sbjct:  142 PFSSSCPYAIPSEEEARERSGNTSAPGNVVVVTDFNYCRLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGPRNFDFSSAPDVEGFDYSSCPPEITWGGTNAFHLQG 259
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BLAST of mRNA_L-elsbetiae_contig13284.2547.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.960e-39
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:   16 PSCPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSGRE 366
            P CPYI+ T  E   R RDP+I GNV+ + D  +GRLGNRF A+  +L LG+CCKSKLVSLP KD  LAPGIF  G  GPR +DF+ APDVEGF+A SC A I WGG EAFHL G +
Sbjct:  122 PDCPYILRTPGER-LRMRDPAIPGNVLTINDFRFGRLGNRFWALGVNLKLGYCCKSKLVSLPAKDDTLAPGIFGEGTPGPRWYDFTNAPDVEGFDASSCPADITWGGREAFHLLGLD 237
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BLAST of mRNA_L-elsbetiae_contig13284.2547.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.040e-37
Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = 1 
Query:    1 LRPSRPSCPYIIPTEEEADARAR------DPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSG 360
            + P   SCPY I  EEE   R+       + S  GNVVV+ D +Y RLGNRF ++  SLSLG+CCKS+LVSLPPKD  LAPG FN G  GPR FDFS APDVEGF++ SC   I WGGT+AFHL G
Sbjct:  139 IAPFSSSCPYAILAEEEGHERSDRGGDGGNTSAPGNVVVVTDFNYCRLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGPRNFDFSSAPDVEGFDSSSCPPEIKWGGTQAFHLEG 264
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BLAST of mRNA_L-elsbetiae_contig13284.2547.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.340e-35
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:   22 CPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHL 354
            CPY+I T EEA +R +D S+ GNVV +E L + R GN F +   +L+LG+CCKSK+V LPPKD VLAPG+FN G  GPR FDFS APDV+GF++ +C A I W G  AFH+
Sbjct:   94 CPYVIDTAEEAISRIKDKSLPGNVVKVEHLTFCRTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGPRWFDFSSAPDVDGFDSSACSADITWAGQRAFHM 204
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BLAST of mRNA_L-elsbetiae_contig13284.2547.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.620e-28
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:   22 CPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*GISGPRRFDFSRAPDVEGFEALSCHASIAWGGTEAFHLSGRE 366
            C Y IP  + A  +  D +I GNVV +  L +GR GNRF A+  +L+LG+CCK+K V LPPKD VLAPGIFN G  GPR FDFS APDV+G +   C   I W    A  ++G +
Sbjct:   59 CTYAIPNAKVARKQRHDSTIEGNVVKVTHLQFGRTGNRFMAVYRNLALGYCCKAKQVWLPPKDDVLAPGIFNEGTPGPRWFDFSSAPDVDGVDLGRCPIDIIWENRGAMQMAGLD 173
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BLAST of mRNA_L-elsbetiae_contig13284.2547.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.730e-7
Identity = 42/117 (35.90%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:   22 CPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAISCSLSLGFCCKSKLVSLPPKDHVLAPGIFN*G--ISGPRRFDFSRA-PDVEGFEALS-----CHASIAWGGTEAF 348
            CP  + +  +A+A     + + N + L     GR GN F  IS  L++GFCC+S+L++LP  D  + PG    G   +G R FDFSR  P   GFE L      C   +  G   AF
Sbjct:   89 CPQAL-SRSQAEAALDGGNSTSNTITLLSFGSGRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAM-PGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAF 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13284.2547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K7B3_9PHAE2.160e-4265.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2M2_ECTSI2.960e-3961.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1L4_ECTSI1.040e-3758.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2F3_9PHAE2.340e-3557.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G610_ECTSI1.620e-2850.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRV9_ECTSI2.730e-735.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13284contigL-elsbetiae_contig13284:3008..5118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size826
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13284.2547.1prot_L-elsbetiae_contig13284.2547.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13284 3008..3710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.6225193-CDS-L-elsbetiae_contig13284:3007..31961622815504.6225193-CDS-L-elsbetiae_contig13284:3007..3196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 3008..3196 +
1691682930.6441095-CDS-L-elsbetiae_contig13284:3007..31961691682930.6441095-CDS-L-elsbetiae_contig13284:3007..3196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 3008..3196 +
1622815504.668365-CDS-L-elsbetiae_contig13284:3659..37101622815504.668365-CDS-L-elsbetiae_contig13284:3659..3710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 3660..3710 +
1691682930.6537058-CDS-L-elsbetiae_contig13284:3659..37101691682930.6537058-CDS-L-elsbetiae_contig13284:3659..3710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 3660..3710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.680377-UTR-L-elsbetiae_contig13284:3710..39391622815504.680377-UTR-L-elsbetiae_contig13284:3710..3939Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13284 3711..3939 +
1691682930.664015-UTR-L-elsbetiae_contig13284:3710..39391691682930.664015-UTR-L-elsbetiae_contig13284:3710..3939Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13284 3711..3939 +
1622815504.6923418-UTR-L-elsbetiae_contig13284:4315..44891622815504.6923418-UTR-L-elsbetiae_contig13284:4315..4489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13284 4316..4489 +
1691682930.6759348-UTR-L-elsbetiae_contig13284:4315..44891691682930.6759348-UTR-L-elsbetiae_contig13284:4315..4489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13284 4316..4489 +
1622815504.7048733-UTR-L-elsbetiae_contig13284:4935..51181622815504.7048733-UTR-L-elsbetiae_contig13284:4935..5118Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13284 4936..5118 +
1691682930.686664-UTR-L-elsbetiae_contig13284:4935..51181691682930.686664-UTR-L-elsbetiae_contig13284:4935..5118Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13284 4936..5118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13284.2547.1

>prot_L-elsbetiae_contig13284.2547.1 ID=prot_L-elsbetiae_contig13284.2547.1|Name=mRNA_L-elsbetiae_contig13284.2547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
LRPSRPSCPYIIPTEEEADARARDPSISGNVVVLEDLDYGRLGNRFRAIS
CSLSLGFCCKSKLVSLPPKDHVLAPGIFN*
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mRNA from alignment at L-elsbetiae_contig13284:3008..5118+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13284.2547.1 ID=mRNA_L-elsbetiae_contig13284.2547.1|Name=mRNA_L-elsbetiae_contig13284.2547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2111bp|location=Sequence derived from alignment at L-elsbetiae_contig13284:3008..5118+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCGCCCATCTAGGCCTAGCTGCCCCTACATCATTCCGACAGAGGAAGA
GGCGGATGCGAGAGCTCGTGACCCTTCCATCTCGGGCAATGTGGTCGTTC
TCGAGGACTTAGACTACGGTCGCTTAGGCAACAGGTTCCGCGCAATCAGC
TGCAGCCTCAGCTTAGGCTTCTGCTGCAAGTCGAAGCTCGTGAGTACTGC
TTCCAAAACCTTAATCCGTTAACCTCTACTTCGCTTCAAAGACAAGTGTG
TCTACAACAGCCCCCCTGGAACGGCTTTTTCACAGATTAAACGTACGTAA
ACCGCTGACATTTGTAGACCTTGGTTAAAAACAAGTGGTAAGCCGCTGGC
ACAATTGGAACGCGAAGCTTTTTTCTGAAGGTGCGCCGTACGAGTGGATG
AGCTGAGGACGAGCACATCTGTTTGGAAAACTCTGTCCCCGCTATACCCA
GCAACATGCCAAGGCCGCGACGTTAGGTTGCGTGACGCGCCTGCTTCAAG
TCGCCCGCAAGAACTCCCGTCGTTGTGCTACGATATGTGTTATTGAACCA
CTTATGTTAACTGGATGCTCTGCACTGCAAGTGCTCGCATGGCGGTGGGT
CTAGAAATGTGCAGCGCTGATGTAACGTGCTCATATGCGTATTCCTCCGC
AGGTATCGCTGCCCCCAAAGGACCACGTTCTCGCCCCCGGTATTTTCAAC
TAGGGGATTTCGGGTCCTAGGAGGTTCGACTTCTCTAGAGCCCCCGATGT
AGAGGGGTTCGAAGCTTTGAGCTGCCACGCCAGCATTGCGTGGGGCGGGA
CCGAAGCGTTTCATCTATCAGGACGTGAGCAGAGCACTTGAAGTTCAGCC
TTATTGTGTTGTTGTTTGGGCTTGTCGGCGCCGCGGTCTTCCCGATAAAC
CTTCCGACCCTGCCTCTCAGCTTTTAGGCAGGGTGTTTTGTACCGATCCT
GTTCAATTGGTGCTTGTTTATCTATATGTATTGTTCCTTTTTCGAACGTC
ATTTCGAACGTTTCCGCTCGATGGTATGCATCGATTTGTAATTCAGGAGA
TGGCTGCTTGAAACTAAAAAAATGATCCCTCTCAGCGCACTTTATATTGA
TACAACAAACAAACCCATTTTTTTATTGAGATCTGGGGATTGTGGGCGCG
ATACCTGAAAGTCTTAAGCCCGTCTCTTTCGGCGGCGCTGAACGTGTGAA
AATCGTGCCCTCCCAGTTCGCGACAAGGAGCATCCGTACTACACTCCGGG
GCTGTTTGAGTGCGTCATGGCCCTGCCCCCGGTAATCGGGTGCGAAGCTG
CCTACCAGTTCCCAACAGACATTGATTTGTGCCAAAACAGAGGAGAAGGA
GCAGACGAGCTGGCGACGGTAGAGGAAGAAGAGGAGCGGGCGAGAAACCA
GCAGGAGGTGGCTGGGAACCTCGTGGTGCACGTCAGATCAGGGGACGCTT
TCCACAACCCAGTCCATCACGGACTCGGCCAGGTAAGGATGGATCTCACG
CTTCTATTTGCTGTTGATTTGCTTAGCCCATGTTGCCAGCAGTATTACCC
TCTAGAATAATGGTTCAGACAGTTTTTTTTTTCGTACTTGGTGTTTTCTT
ACCCTTCTTAGGTAATAGAATAGTGAGAATCGTTCCCCGGACGTTCTGGC
TTCCGCCATGTCACCTCCAATCGAGGCAGCGGCACCCTTCATCACTCCCT
AGTGGTCACATGTTCCTTTCAGCTTCTCCCCTCGTTCGGTTCACCCATCG
ATATAATTAGCACTCCGCTCGCTGGCTCATACATGCGCTACTTTTACTGT
TGCCGCTTCACGCACGCGTTTGTCTAATGTGTTCTGTCCGTACTTGTTTC
TTTGACGATGGATCAACCGTCATTTTGCATCGCTTCTCACCAACTCATGT
GGCCGCATTGCAACAGCCGCCGCTGCAGTACTACCTACGTGCGATAAAGG
ATCATAATTGGAGGCGTGTGGACATTGTCACGAACGGAAACGAGTACCAT
GCTCTCAACCCTGTCGTGCCGGCCCTCGAGGCAAAAGTGGCAGACGGCGA
GCTCCCCGCCAACATACATTTTCACAAGGTGAGACCGAACAGTGATTCGG
TGTGGTCACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13284:3008..5118+

>mRNA_L-elsbetiae_contig13284.2547.1 ID=mRNA_L-elsbetiae_contig13284.2547.1|Name=mRNA_L-elsbetiae_contig13284.2547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig13284:3008..5118+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCGCCCATCTAGGCCTAGCTGCCCCTACATCATTCCGACAGAGGAAGA
GGCGGATGCGAGAGCTCGTGACCCTTCCATCTCGGGCAATGTGGTCGTTC
TCGAGGACTTAGACTACGGTCGCTTAGGCAACAGGTTCCGCGCAATCAGC
TGCAGCCTCAGCTTAGGCTTCTGCTGCAAGTCGAAGCTCCTGCGCCCATC
TAGGCCTAGCTGCCCCTACATCATTCCGACAGAGGAAGAGGCGGATGCGA
GAGCTCGTGACCCTTCCATCTCGGGCAATGTGGTCGTTCTCGAGGACTTA
GACTACGGTCGCTTAGGCAACAGGTTCCGCGCAATCAGCTGCAGCCTCAG
CTTAGGCTTCTGCTGCAAGTCGAAGCTCGTATCGCTGCCCCCAAAGGACC
ACGTTCTCGCCCCCGGTATTTTCAACTAGGTATCGCTGCCCCCAAAGGAC
CACGTTCTCGCCCCCGGTATTTTCAACTAG
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