mRNA_L-elsbetiae_contig13284.2546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13284.2546.1
Unique NamemRNA_L-elsbetiae_contig13284.2546.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13284.2546.1 vs. uniprot
Match: D7G977_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G977_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 8.750e-7
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  358 TSVMAVATRMRKAAGATHDPVDPYYVLVDLVVNGNPAPLAFRIPRKPA 501
            T V  +A +MR  A A+HDP DP  V VDL+VNG+PAPL FRIP K A
Sbjct:  159 TRVEEIARKMRATAEASHDPADPASVFVDLLVNGDPAPLVFRIPPKKA 206
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BLAST of mRNA_L-elsbetiae_contig13284.2546.1 vs. uniprot
Match: A0A6H5JC06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC06_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.580e-6
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  358 TSVMAVATRMRKAAGATHDPVDPYYVLVDLVVNGNPAPLAFRIPRKPA 501
            T V  +A +MR  A A+HDP DP  V VDL+VNG+PAPL FRIP K A
Sbjct:  115 TRVEEIARKMRATAEASHDPSDPASVFVDLLVNGDPAPLVFRIPPKKA 162
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13284.2546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G977_ECTSI8.750e-760.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC06_9PHAE1.580e-660.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13284contigL-elsbetiae_contig13284:614..1798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size668
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.2086442-CDS-L-elsbetiae_contig13284:613..10041622815504.2086442-CDS-L-elsbetiae_contig13284:613..1004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 614..1004 +
1691682930.5739305-CDS-L-elsbetiae_contig13284:613..10041691682930.5739305-CDS-L-elsbetiae_contig13284:613..1004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 614..1004 +
1622815504.2211668-CDS-L-elsbetiae_contig13284:1521..17961622815504.2211668-CDS-L-elsbetiae_contig13284:1521..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 1522..1796 +
1691682930.5836322-CDS-L-elsbetiae_contig13284:1521..17961691682930.5836322-CDS-L-elsbetiae_contig13284:1521..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13284 1522..1796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13284.2546.1prot_L-elsbetiae_contig13284.2546.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13284 614..1796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13284.2546.1

>prot_L-elsbetiae_contig13284.2546.1 ID=prot_L-elsbetiae_contig13284.2546.1|Name=mRNA_L-elsbetiae_contig13284.2546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
DEVGTDAKDALDKIWRRSEVLSASGDSVYETGGQAQKPSEPSALSVAPVI
SDVVETNQRAANQRPEQEQRKHHRQQHDQQDHYNQHGHGPNKGSSESEAG
TAVGTAAAAVASAAESPAETSVMAVATRMRKAAGATHDPVDPYYVLVDLV
VNGNPAPLAFRIPRKPARSDRDRCREQTTTTTAAAETVTTTAAGAGGSVE
KDEEAQGGFGQDGTGASRENAA
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mRNA from alignment at L-elsbetiae_contig13284:614..1798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13284.2546.1 ID=mRNA_L-elsbetiae_contig13284.2546.1|Name=mRNA_L-elsbetiae_contig13284.2546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1185bp|location=Sequence derived from alignment at L-elsbetiae_contig13284:614..1798+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAAGTGGGCACCGATGCAAAAGATGCCTTGGACAAGATATGGAGGCG
TTCGGAGGTTCTCAGCGCTAGTGGAGACAGCGTCTACGAGACTGGAGGAC
AAGCACAGAAGCCGTCGGAGCCATCAGCGCTTTCCGTCGCCCCAGTGATT
TCGGATGTGGTGGAAACGAACCAACGAGCCGCGAATCAACGGCCGGAACA
GGAGCAACGCAAGCACCACCGGCAGCAGCACGACCAACAGGACCACTACA
ATCAACACGGTCATGGGCCCAATAAAGGAAGCAGTGAGTCAGAAGCAGGA
ACAGCGGTGGGGACGGCGGCAGCAGCCGTGGCATCAGCTGCGGAATCTCC
TGCCGAAACATCTGTGATGGCGGTTGCGACCCGGATGAGGAGTGAGTCTA
AGCGCGCTGCCAACGCTACAACTTACACTTCGAAGTATGCATACATGAAT
CTCTTCTTCCTCCAAAACGCAGCTGGCCTCGCATGTGTAGTACCCACCCC
CACAACTTGCCGTGTGACAGATGTCTCTGTATCGTACACAACCTCCCATT
CCACCCATAAGGTCGTTGCCGATTACCATGAAGCGAACTTGTCCTCCTCC
GCCGCTGAGCTGCCCCGCGCCGCCAACCACTGCCAGAACGGTTTCGCCCA
AGGCCTTATTCGCTGTTCCCGTATTTCCCCCTTCGACCCTGCTTCTCAGC
CGGAATCGTTTCGCACAATGAACGTCCGTTCTGAACGGTGTACGTAGACT
ATATAGGCCGTGCCGATAGCACTCGCGTCTATCCGTATAGGCTGCCGTCA
GCTATCATCCGTGTCGTCTCCCCTTCCGGCTCTCCCTCATGTCACTCGCC
CGTCCCAATCTCGAAACGGCTCGCCACTCGCGCTAACTTGTCGCCTTGTT
GGATTCAGAAGCGGCAGGGGCTACCCATGACCCTGTCGATCCTTACTACG
TGCTCGTGGACCTTGTCGTGAACGGGAACCCCGCCCCGTTGGCGTTCCGT
ATCCCACGCAAGCCCGCTCGGAGCGATCGCGACCGCTGTCGCGAGCAAAC
GACGACGACGACGGCGGCCGCGGAAACGGTCACCACGACAGCGGCTGGCG
CCGGCGGTTCCGTAGAGAAGGACGAAGAAGCGCAGGGGGGGTTTGGCCAG
GACGGTACAGGAGCAAGCAGAGAGAATGCCGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13284:614..1798+

>mRNA_L-elsbetiae_contig13284.2546.1 ID=mRNA_L-elsbetiae_contig13284.2546.1|Name=mRNA_L-elsbetiae_contig13284.2546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig13284:614..1798+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAAGTGGGCACCGATGCAAAAGATGCCTTGGACAAGATATGGAGGCG
TTCGGAGGTTCTCAGCGCTAGTGGAGACAGCGTCTACGAGACTGGAGGAC
AAGCACAGAAGCCGTCGGAGCCATCAGCGCTTTCCGTCGCCCCAGTGATT
TCGGATGTGGTGGAAACGAACCAACGAGCCGCGAATCAACGGCCGGAACA
GGAGCAACGCAAGCACCACCGGCAGCAGCACGACCAACAGGACCACTACA
ATCAACACGGTCATGGGCCCAATAAAGGAAGCAGTGAGTCAGAAGCAGGA
ACAGCGGTGGGGACGGCGGCAGCAGCCGTGGCATCAGCTGCGGAATCTCC
TGCCGAAACATCTGTGATGGCGGTTGCGACCCGGATGAGGAGACGAAGTG
GGCACCGATGCAAAAGATGCCTTGGACAAGATATGGAGGCGTTCGGAGGT
TCTCAGCGCTAGTGGAGACAGCGTCTACGAGACTGGAGGACAAGCACAGA
AGCCGTCGGAGCCATCAGCGCTTTCCGTCGCCCCAGTGATTTCGGATGTG
GTGGAAACGAACCAACGAGCCGCGAATCAACGGCCGGAACAGGAGCAACG
CAAGCACCACCGGCAGCAGCACGACCAACAGGACCACTACAATCAACACG
GTCATGGGCCCAATAAAGGAAGCAGTGAGTCAGAAGCAGGAACAGCGGTG
GGGACGGCGGCAGCAGCCGTGGCATCAGCTGCGGAATCTCCTGCCGAAAC
ATCTGTGATGGCGGTTGCGACCCGGATGAGGAAAGCGGCAGGGGCTACCC
ATGACCCTGTCGATCCTTACTACGTGCTCGTGGACCTTGTCGTGAACGGG
AACCCCGCCCCGTTGGCGTTCCGTATCCCACGCAAGCCCGCTCGGAGCGA
TCGCGACCGCTGTCGCGAGCAAACGACGACGACGACGGCGGCCGCGGAAA
CGGTCACCACGACAGCGGCTGGCGCCGGCGGTTCCGTAGAGAAGGACGAA
GAAGCGCAGGGGGGGTTTGGCCAGGACGGTACAGGAGCAAGCAGAGAGAA
TGCCGCGAAGCGGCAGGGGCTACCCATGACCCTGTCGATCCTTACTACGT
GCTCGTGGACCTTGTCGTGAACGGGAACCCCGCCCCGTTGGCGTTCCGTA
TCCCACGCAAGCCCGCTCGGAGCGATCGCGACCGCTGTCGCGAGCAAACG
ACGACGACGACGGCGGCCGCGGAAACGGTCACCACGACAGCGGCTGGCGC
CGGCGGTTCCGTAGAGAAGGACGAAGAAGCGCAGGGGGGGTTTGGCCAGG
ACGGTACAGGAGCAAGCAGAGAGAATGCCGCG
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