mRNA_L-elsbetiae_contig13279.2544.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13279.2544.1
Unique NamemRNA_L-elsbetiae_contig13279.2544.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A0A6H5KWR4_9PHAE (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWR4_9PHAE)

HSP 1 Score: 439 bits (1128), Expect = 1.600e-148
Identity = 214/244 (87.70%), Postives = 233/244 (95.49%), Query Frame = 3
Query:  360 DAIWARAELPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAWKSVSDFGLFKSGEAEEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEKTPP-NEEVEKAVFGKMGKPNASERVQASAKFFQDGM 1088
            DA+WARAELPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIG TE+DDWPGGDRQRYKACGPMV+S+LRGNPAAKEGAS+VEQILDESDAVGLMQLQCKEAKDDAS+MIFPTTDTL LQ+QV +GAGSRLVALVNPAW+S SDFGLF++GEAEE LSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFL+GE +GKRELLGSW+++PP N++VE AVF K GKPNASERVQASAKFFQD +
Sbjct:   97 DAVWARAELPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGKTEIDDWPGGDRQRYKACGPMVESVLRGNPAAKEGASIVEQILDESDAVGLMQLQCKEAKDDASVMIFPTTDTLSLQQQVAAGAGSRLVALVNPAWRSSSDFGLFQAGEAEETLSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLIGEGSGKRELLGSWDRSPPTNDQVESAVFDKKGKPNASERVQASAKFFQDSL 340          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A0A6V1R6U0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R6U0_HETAK)

HSP 1 Score: 192 bits (489), Expect = 3.120e-53
Identity = 100/254 (39.37%), Postives = 157/254 (61.81%), Query Frame = 3
Query:  366 IWARAELPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEG------------ASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAWKSVSDFGLFKSGEAEEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEK---TPPNEEVEKAVFGKMGKPNASERVQASAKFFQD 1082
            +++   +P   + QV QA++++ +A +DG TRQ +++ LPLIGATE+DDWPGG +Q+Y+AC PMV SLL+      E               ++ Q++D  DAVG++Q Q  + K D   +IFP T+++ + KQ++  AG+RL  LVNP WK V+DFG F   +A++ L  +E +Y +QSL+VYG ++RLL  YP PW+LF   E TG   L+  +++    P  + +E  +  K G+ + +ER+Q S  F +D
Sbjct:   66 VFSPPRIPRGTEDQVLQASQSIQRAFNDGITRQQVKIELPLIGATELDDWPGGIKQQYQACEPMVISLLKKLAKLDEDDLNENEQKTTTQPQILSQVIDADDAVGVLQAQSSDPKKDKLAVIFPNTESIKVLKQLSESAGNRLKLLVNPQWKRVADFGFFGQQDAKKFLEPYERSYHIQSLLVYGRSVRLLRRYPDPWQLFSFDEKTGDSTLIHVFQEGKDVPEYKVIEDILDRKYGRMSVAERIQQSTDFIKD 319          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A0A1Y1I3J2_KLENI (DUF1995 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3J2_KLENI)

HSP 1 Score: 157 bits (398), Expect = 1.580e-40
Identity = 88/237 (37.13%), Postives = 147/237 (62.03%), Query Frame = 3
Query:  384 LPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAWKS---VSDFGLFKSGEA-EEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEKTPPNEEVEKAVFGKMGKPNAS---ERVQASAKF 1073
            LP ++D+ VEQA  A  +A++DGKTR  + L LPLIGAT++DDWPGG +Q++KA  P+V SLLRG        +  + +LDE+DAVG+ +       D  ++++FP  +T+P  +++ +  G  L+ ++NP W++   +SDFG     +A E+ L+ FE  Y LQ   + G  +R+L CYPGP++++L+ +D GK +++ S E  P  +E++  + G++G   +    E++    KF
Sbjct:   51 LPTTSDLSVEQARGACQRAIADGKTRLQIELLLPLIGATDLDDWPGGIKQQFKAAVPLVYSLLRGLVGTSSAEASKKTLLDEADAVGVWE------SDSVALVLFPNAETVPDLERLAAVEGRPLL-IMNPQWQAGQVISDFGFGARKQASEDFLATFEPAYQLQQKRIQGEDVRILRCYPGPYQVYLI-DDRGKSDVVTSSETLPTYKEIDALLRGRVGSRASKSWLEKLMGETKF 279          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A0A6T7UM00_9CHLO (Hypothetical protein n=2 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A6T7UM00_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 1.560e-34
Identity = 91/254 (35.83%), Postives = 140/254 (55.12%), Query Frame = 3
Query:  348 SEEADAIWARAELPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAW---KSVSDFGLFKSGEAEEA-LSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEKTPPNEEVE---KAVFGKMGKPNASERVQASAKFFQDGM 1088
            SE+A       ELP+S++  V+QAT A+  A++DGK    +   LPLIGAT++DDWPGG RQ +KA  PMV+ +LR      +      +ILD++DA+GL      + K  A+++ FPT DT+     +     SR +  VN  W   + +SDFG     E  E+ ++ FE  Y L+S  V G  +R+L  YPG W+++ + E  G+ EL+G  +  P  +E+E   +A  G +   +  +R+ A  KF  D +
Sbjct:   93 SEDASNATTSIELPVSSEETVKQATNAINAAIADGKILVDVEFVLPLIGATDLDDWPGGVRQMFKAAAPMVEEILRNILGVMDKGGCRTEILDQADAIGLW-----DGKGIAAVL-FPTADTVDEIMDLAKKDRSRPIITVNKQWTYGQVISDFGFGPWRERRESFINSFEPAYCLKSFRVLGENVRILRGYPGTWKVYAISE-AGEAELVGDQDAQPTYKELEAMLRAREGSISNQSIFQRLSAEFKFNADSL 339          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A0A7S1D696_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D696_CYCTE)

HSP 1 Score: 140 bits (354), Expect = 1.810e-34
Identity = 82/205 (40.00%), Postives = 116/205 (56.59%), Query Frame = 3
Query:  384 LPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLP----LQKQVTSGAGSRLVALVNPAWKSVSDFGLFKSGEAEEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKREL--LGSWE 980
             P S   QV QA+ A+ +A  DG  R  +RL LPLIGATE+DDWPGG RQ  +A  P+++++L    A +    V + +LDESD V  +  Q  EAKDD+  ++ P+ DT+P    L+KQV     +R + + NP WK  SDFG F      +    F  T+   +L+V G   R+L  +PGPWR+F+  +  G  E   +GS E
Sbjct:    9 FPSSVADQVRQASEALKRATEDGLHRHSVRLLLPLIGATELDDWPGGSRQMIEAAYPLMENILTNTGAER----VSQSVLDESDGVRAIMAQATEAKDDSCAVLLPSADTIPQLQTLEKQV---GDTRNLVIANPQWKRQSDFGFFGRKNKIDFAETFVPTFHCTNLIVEGQQARILRSHPGPWRVFVSEDQRGVIEWKEIGSKE 206          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A4RU68_OSTLU (DUF1995 domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RU68_OSTLU)

HSP 1 Score: 133 bits (334), Expect = 1.090e-31
Identity = 83/241 (34.44%), Postives = 130/241 (53.94%), Query Frame = 3
Query:  384 LPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAWKS----VSDFGLFK-SGEAEEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKR---ELLGSWEKTPPNEEVEKAVFGKMGK---PNASERVQASAKF 1073
            LP++   Q+EQA  A+  AL DGKT Q + L+LPLIGAT++DDWPGG RQ+Y A  PMV  +LR   A  EG +  ++++D++DAV  + L          ++ FPT + L   + + +    RL  + NP W +    + DFG       AEE + +FE TY L+   + G  +R L  YP  W++F +  +   +   E LG +++ P  ++++K +  + G     N  ER +  A F
Sbjct:   22 LPLNTKEQIEQAAGAIEAALRDGKTTQAIELNLPLIGATDLDDWPGGIRQQYGALAPMVSEVLRLINAGAEG-TCQQRVIDDADAVAALTL------GSDVVVSFPTAEVLDDLRAIENKNDFRLKIIANPQWNTKGAIIGDFGFGPWKRRAEEFVGKFEQTYYLKEQRIQGEIVRTLKVYPNKWQVFALAPNENNKIVAEALGEFDERPLYDQLKKLLESREGSIAAMNWVERAKREATF 255          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: K8F3J3_9CHLO (DUF1995 domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F3J3_9CHLO)

HSP 1 Score: 133 bits (335), Expect = 2.720e-31
Identity = 84/239 (35.15%), Postives = 128/239 (53.56%), Query Frame = 3
Query:  381 ELPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAW----KSVSDFGLFKSGEAEEA-LSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEKTPPNEEVEKAVFGKMGK---PNASERVQASAKF 1073
            ELP S   QVE A ++V +AL  GK    +   +PLIGAT++DDWPGG RQ+Y++  PMV++L++     K   +V ++++D++DAV       K    D     FPT + L   KQ+T  A  R   ++NP W      ++DFG     E  E  + EFE+ Y L+   + G T RL   + GPW++F++ + TG+ E L  +E+ P   E+E  +  + G     N  ER Q+   F
Sbjct:   76 ELPKSTSQQVELAAKSVKKALESGKKNVEVTFDIPLIGATDLDDWPGGVRQQYQSMSPMVEALMKAVSGEK---TVAKKVIDDADAV------VKVTSGDDVCTTFPTAEVLSDLKQITKDA-KRANMIINPQWVLNGNILNDFGFGPWREKNEKFVKEFEIAYFLKEQRIQGETFRLQKVFGGPWQVFVLNQQTGQVEPLPPFEERPSYRELEALLQSREGSIAAMNWVERAQSEMTF 304          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A0A835WHR4_9CHLO (DUF1995 domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WHR4_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 1.630e-30
Identity = 90/239 (37.66%), Postives = 127/239 (53.14%), Query Frame = 3
Query:  405 QVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRGNPAAKEGAS--VVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLP-LQKQVTSGAGSRLVALVNPAWKS----VSDFGLFKSGEAEEA-LSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEKTPPNEEVEKAVFGK---MGKPNASERVQASAKFFQDGM 1088
            Q +QA +A+  A  DG  RQ L LSLPLIGAT++DDWPGG RQ++KA  PMV+S+LR      EG    +   I D+ DAVG           + + ++FPT  TL  L K  T      LV +VNP W++    VSDFG     EA E  ++ F  TYSL+   VYG  LR L  YP  W++ LV +     E + + E  P  +E+E  +  +   M   +  +R+Q   +F ++ +
Sbjct:   52 QAQQAAQAIEAAWRDGIKRQRLELSLPLIGATDLDDWPGGIRQQFKAAQPMVESILR-TVKQVEGLQGPLAANIWDQGDAVGAW------TGKNLACVLFPTASTLDRLNKLCTGPDAPELVLIVNPQWETRGNLVSDFGFGARKEASERFIASFADTYSLRQWRVYGDQLRTLRAYPNRWQVHLV-QGRNASECIATREAAPSYQEIEALLRDRPDAMMNKSIFDRIQTEFRFNEESL 282          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A9P106_PICSI (DUF1995 domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P106_PICSI)

HSP 1 Score: 129 bits (324), Expect = 4.340e-30
Identity = 80/223 (35.87%), Postives = 128/223 (57.40%), Query Frame = 3
Query:  384 LPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRG---NPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAWKS---VSDFGLF-KSGEAEEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEKTPPNEEVEKAVFGKMG 1031
            LP++ +  V QA  A   A+ DG TR  L   LPLIGAT++DDWPGG +Q++KA  P+V SLL G   +    + +S  +  LDE DA G+ +      KD  ++++FPT ++LP  + +T+ A  R + L+NP W++   +SDFG   +  + E+ +  F   Y L+ + + G  +RLL  YPG W++F+  +  G+ E +G  E+ P  + V+  +  K G
Sbjct:   50 LPVTLEQSVNQAKLACRYAIGDGLTRLQLEFLLPLIGATDLDDWPGGIQQQFKAAVPIVSSLLNGLVEDDVVDDDSSYRKYFLDEGDATGVWE------KDKIALVLFPTAESLPTIENLTTVA-DRPLLLLNPQWQAGQVISDFGFGDQRKQREKFVQSFSNVYFLKQIRILGEDVRLLKSYPGLWQVFVTNKG-GEVECIGVEEEKPSYKRVQDILKEKKG 264          
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Match: A0A176WGM7_MARPO (DUF1995 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WGM7_MARPO)

HSP 1 Score: 131 bits (330), Expect = 5.580e-30
Identity = 81/223 (36.32%), Postives = 126/223 (56.50%), Query Frame = 3
Query:  384 LPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDWPGGDRQRYKACGPMVDSLLRG---NPAAKEGASVVEQILDESDAVGLMQLQCKEAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAWKS---VSDFGL-FKSGEAEEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKRELLGSWEKTPPNEEVEKAVFGKMG 1031
            LP + +  ++QA  A  QA+ DG  R  L + LPLIGAT++DDWPGG +Q++KA GP+V SLL G   +   K        I+D+SDAVG  +       DDA++++FPT ++L   + + +    R + LVN  W+S   +SDFG   +    EE ++ FEV Y L+ + + G  LRLL  YPG W++F++ +  G  E +    + P  + +E  +  + G
Sbjct:  155 LPSTLEESIDQARTASRQAIKDGIKRMQLEVLLPLIGATDLDDWPGGIQQQFKAAGPVVTSLLSGLVDSDNYKAEGGYRSYIIDDSDAVGAWE------NDDAALVLFPTAESLDSVQALAAAKEDRPLLLVNVQWQSGQVISDFGFGAQKRSREEFVNSFEVVYFLKQMRMLGEDLRLLKRYPGDWQVFVM-DAAGGSECVAVEPQRPSYKALEALLKSRKG 370          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13279.2544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWR4_9PHAE1.600e-14887.70DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6V1R6U0_HETAK3.120e-5339.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Y1I3J2_KLENI1.580e-4037.13DUF1995 domain-containing protein n=1 Tax=Klebsorm... [more]
A0A6T7UM00_9CHLO1.560e-3435.83Hypothetical protein n=2 Tax=Pyramimonas obovata T... [more]
A0A7S1D696_CYCTE1.810e-3440.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A4RU68_OSTLU1.090e-3134.44DUF1995 domain-containing protein n=1 Tax=Ostreoco... [more]
K8F3J3_9CHLO2.720e-3135.15DUF1995 domain-containing protein n=1 Tax=Bathycoc... [more]
A0A835WHR4_9CHLO1.630e-3037.66DUF1995 domain-containing protein n=2 Tax=Chlamydo... [more]
A9P106_PICSI4.340e-3035.87DUF1995 domain-containing protein n=1 Tax=Picea si... [more]
A0A176WGM7_MARPO5.580e-3036.32DUF1995 domain-containing protein n=2 Tax=Marchant... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13279contigL-elsbetiae_contig13279:891..4255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score435.6
Seed ortholog evalue2.1e-119
Seed eggNOG ortholog2880.D8LK72
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain of unknown function (DUF1995)
EggNOG OGs2CY3V@1,2S1TJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionDomain of unknown function DUF1995
Ec32 orthologEc-08_002980.1
Exons5
Model size1641
Cds size1026
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.0451853-UTR-L-elsbetiae_contig13279:890..14401622815504.0451853-UTR-L-elsbetiae_contig13279:890..1440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13279 891..1440 -
1691682930.4767623-UTR-L-elsbetiae_contig13279:890..14401691682930.4767623-UTR-L-elsbetiae_contig13279:890..1440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13279 891..1440 -
1622815504.109994-UTR-L-elsbetiae_contig13279:4190..42551622815504.109994-UTR-L-elsbetiae_contig13279:4190..4255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13279 4191..4255 -
1691682930.5322857-UTR-L-elsbetiae_contig13279:4190..42551691682930.5322857-UTR-L-elsbetiae_contig13279:4190..4255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13279 4191..4255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.055385-CDS-L-elsbetiae_contig13279:1440..16411622815504.055385-CDS-L-elsbetiae_contig13279:1440..1641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 1441..1641 -
1691682930.4866364-CDS-L-elsbetiae_contig13279:1440..16411691682930.4866364-CDS-L-elsbetiae_contig13279:1440..1641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 1441..1641 -
1622815504.0667398-CDS-L-elsbetiae_contig13279:2191..23501622815504.0667398-CDS-L-elsbetiae_contig13279:2191..2350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 2192..2350 -
1691682930.494658-CDS-L-elsbetiae_contig13279:2191..23501691682930.494658-CDS-L-elsbetiae_contig13279:2191..2350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 2192..2350 -
1622815504.07892-CDS-L-elsbetiae_contig13279:2977..31151622815504.07892-CDS-L-elsbetiae_contig13279:2977..3115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 2978..3115 -
1691682930.5077667-CDS-L-elsbetiae_contig13279:2977..31151691682930.5077667-CDS-L-elsbetiae_contig13279:2977..3115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 2978..3115 -
1622815504.0901072-CDS-L-elsbetiae_contig13279:3518..36741622815504.0901072-CDS-L-elsbetiae_contig13279:3518..3674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 3519..3674 -
1691682930.5165625-CDS-L-elsbetiae_contig13279:3518..36741691682930.5165625-CDS-L-elsbetiae_contig13279:3518..3674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 3519..3674 -
1622815504.1001208-CDS-L-elsbetiae_contig13279:3818..41901622815504.1001208-CDS-L-elsbetiae_contig13279:3818..4190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 3819..4190 -
1691682930.5244005-CDS-L-elsbetiae_contig13279:3818..41901691682930.5244005-CDS-L-elsbetiae_contig13279:3818..4190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13279 3819..4190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13279.2544.1prot_L-elsbetiae_contig13279.2544.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13279 1441..4190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13279.2544.1

>prot_L-elsbetiae_contig13279.2544.1 ID=prot_L-elsbetiae_contig13279.2544.1|Name=mRNA_L-elsbetiae_contig13279.2544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=342bp
MASRRCSSAIPFVAGVLLVSASQVSAFVAGARGSCFRASPALAGSSCAAV
GAWGYDKDVSGCTLADRVHRWDTRLLSATPEDVDASSAEDSGSGSEEADA
IWARAELPMSNDVQVEQATRAVWQALSDGKTRQILRLSLPLIGATEMDDW
PGGDRQRYKACGPMVDSLLRGNPAAKEGASVVEQILDESDAVGLMQLQCK
EAKDDASIMIFPTTDTLPLQKQVTSGAGSRLVALVNPAWKSVSDFGLFKS
GEAEEALSEFEVTYSLQSLVVYGYTLRLLYCYPGPWRLFLVGEDTGKREL
LGSWEKTPPNEEVEKAVFGKMGKPNASERVQASAKFFQDGM*
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mRNA from alignment at L-elsbetiae_contig13279:891..4255-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13279.2544.1 ID=mRNA_L-elsbetiae_contig13279.2544.1|Name=mRNA_L-elsbetiae_contig13279.2544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3365bp|location=Sequence derived from alignment at L-elsbetiae_contig13279:891..4255- (Laminarionema elsbetiae ELsaHSoW15)
AGTGATTGTTCGTCTTCAGTCTGTAGTTTCTCACGTGCTCACGGGCCTGC CGTGCAAGATAGATTATGGCCTCACGGCGATGCTCTTCGGCAATCCCTTT CGTCGCTGGGGTGCTGCTAGTGTCAGCATCTCAGGTTAGTGCTTTCGTTG CGGGCGCGAGAGGATCATGTTTCCGTGCGAGTCCGGCGCTTGCTGGTAGC TCATGCGCTGCCGTTGGGGCATGGGGCTACGACAAGGACGTTAGCGGGTG TACGCTGGCTGATCGAGTACATCGATGGGACACGCGGCTTCTTTCCGCCA CGCCAGAAGATGTTGACGCTTCTAGCGCGGAAGACAGTGGCAGCGGCAGC GAGGAGGCGGATGCAATTTGGGCCCGGGCAGAGCTTCCTATGAGCAACGA CGTGCAGGTTGAACAAGCAACCCGCGCCGTCTGGCAGGTGACTGGCCCCA ATTTACCCAAGCGGCTCGATTTTGAGTGTGCGATGGTGGCAGACTCCCTT TACATCGTATGCGAAGAGTAGAGATAACACACGCCGACTGCTCAAAACTC AAATCCAAATTCCCCCTCTTCCCCAACACAGGCTCTGTCTGACGGCAAAA CCCGCCAGATTTTGAGGTTGTCGCTCCCCCTGATCGGTGCCACGGAAATG GATGACTGGCCCGGAGGCGATCGCCAGCGGTACAAGGCGTGTGGGCCGAT GGTCGACTCGTTGCTGCGCGGGAACCCGGCAGCGAAGGTACGGGGGCTCG AAGAAGCAAGGACTAATCTACTGGATATTCGAATGCAGCGAGCGATATCC TACAGAGCATGTACGTACAGAGTAGACGGAAGCCGAAAAGTCAGAGCCCT GCTATGTAACAGCTTCACGTGATCCCTCCTAAACTAACGATGCTGCCGCG TTTATGATGCCAACACGCTCGCAATGAAGACCGCTGTAAATATCCTCCGC ATCTTCCGTTGCTTCTGAAGCTAATGCCCAGCTCGCTCATAGACGAGTGG GAAGCATTACAACTGCCGCCCGTGGCTTCGGAAGGGGAGCTCACTTGCTG TCAGAAGAAAAGCGCGCTTTGCCAATGCCCGCATGCCCAAGCCGAAGCAC CACATGGTGTACGTCACCGCCCCCCCCCCCCCTCTGACAGGAGGGAGCGT CTGTTGTGGAACAAATTCTGGATGAGTCCGACGCGGTGGGGCTGATGCAG CTGCAGTGCAAGGAGGCCAAGGACGATGCGTCGATCATGATCTTCCCAAC AACGGACACCCTCCCGCTGCAGAAACAGGCGAGAGGCGCAGAATCGAGAT AATTTTGTTTTGAGCTTGTTAAGTCTGCCATCGACTTAACCACGGGTACG GCAGGGTTGGGCAGTCCAATCCCGCGGGTATTCCATCAGTACATCCGGCA CACTCTTGTCGTTAGATTATGTTCGCCGACCTATACACGTCAAGCAGCGC ATTCCTCATGCTGCAAGCAACTCCACACGGTTTCGTCGCCTATACGAAAG AGAGGGCTGGTTGTGAAGCTTCCGCTGCTGCTCATGCCTTTTTCAGTTTT CGAGTGGTACCTATCTTGCGCATAGCTCTCGTTGGTTTTAACGAAGCCAT CGGGCGTAGCTCTCTACTTTTCGACGATGCCACATGGCAGATACCGTGCC ATCACACCTGCTTGAGTTTCGCCTCAACTTCTGCACTTCCTGCGGTAGAG TCCCTAGTAGAAGGAGTGGCGGGTGGTTTTGCGTCCGTGGGCGTGGCGCC CCAGCGAACAGGGCGGATACGTGTAGTCATGATGTCGGCTTTTCGGAACC CTGTACACTTCTCTCCTGCCTCGCTCCGGTCGCTCGAGTTTCGACCCCGC CAAAAACCGAAACCAAGTGATTGACGTATCCAACGAACCACACGGAGCCG CTCAGGTAACGTCGGGAGCCGGATCCCGCCTCGTGGCGCTTGTCAACCCC GCGTGGAAGAGCGTCTCGGATTTCGGGCTGTTCAAGTCCGGAGAGGCGGA GGAGGCGCTGTCTGAGTTCGAGGTCACCTACTCGCTCCAAAGCCTCGTCG TCTACGGCTACACGGTGAGAAGCTGGTATCATCCGTGTCCCCTGCGGTAG ACCCTTCCGTTGTTTTTTTTGCCCGCACTCGTGGTTGTCGCGGGCTGTTT CCCACAGAGCTGCAACAAAGTGCCTGTTGGTGCCTTTCGGTTTCGGTCTT GTCGCGAGTCTTTAAAAGCATTTGTCGTGGGTCGGTGTCTATTTTTTTTT ATGGCAGCTTCTGTTTTGGGGGGCAACCAAGCAAGCTACGAGAATTGGTC TCCGAAGAAAGGTTGTACTACATGGAAATAAGAGAGGTTGTATGTTCTGT TGCCACACAACCTCTTTATAATGATGCAAGCTACCAGGTGGGCGCTATTC TCTTGCTTCCTCGCCGGTTCGTTGGTTGGTTGGGTCGATAAATCAGCCTC TTTTTGCGGGTGTTGTGTCAGAAAAAGAGAAGGTGGGCCGTCTGAGAGAA CGGCGTCAGGGTCCGCAACTCCGGTACTCGTAACTCTGCCCCTCCCTCCC TCCCTCCCTCCCTCCCCTCCCTCCCTCCCTCCCGTCCTCCCTCTCTGTCC CTCCCGCGCCAAAGCTGCGGCTTCTGTACTGCTACCCTGGCCCTTGGCGG CTATTCCTCGTGGGAGAGGACACCGGGAAGAGAGAGCTGCTCGGCTCCTG GGAGAAAACCCCGCCGAACGAGGAAGTGGAGAAGGCGGTGTTCGGCAAGA TGGGCAAGCCGAACGCGTCCGAGAGAGTTCAGGCCAGCGCCAAGTTTTTC CAGGACGGCATGTGAATGTTTTTATCGTCTTCACCTATACAGAGAACTGA GAAGAGTACCGCATTGCTGACGTTTGTTGTCTTCCGTGTAGGCCATAGAG GAGTTACAGGGTGGTGAGTTGACGCCGCAGAAGGCATTTTAGCGCGTACG CAACGAAACGTGTGGAGAGCGTCCGGCACGGTTTGGTGCTGAAGACAGCG GTACAACTAAGCACGATGTGTATTGCGTTTTAGAGTTGCCTTTAGTAATT TGTTTTTGTGGATAGAGTTTTGAGTGTCGGTGGAATAATTAAGATACGAA CAGAGGGAGTAGGCAGCAGTCCTCCGGGTTGACGAGAGGGCATCGAGTGT GCGTCACGGGGTAAATCGATGAGTCGTTAGTCAGTGGCTGAAGAGGTCGT GGGAGGTTGGGTAGAAGTGCTCCTCGCGGGTTTCTGTGATCGGTGCATCA GGTAAACGACAGCACAAATGAGTGTATCTACGATGCGGCATGCAACCTCT TCCTCCTCCTCCTCAAGGTCCTGGGTTTGTTTTCGAGGACAGCAATGTGA CACGCTTACGCTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13279:891..4255-

>mRNA_L-elsbetiae_contig13279.2544.1 ID=mRNA_L-elsbetiae_contig13279.2544.1|Name=mRNA_L-elsbetiae_contig13279.2544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2052bp|location=Sequence derived from alignment at L-elsbetiae_contig13279:891..4255- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCACGGCGATGCTCTTCGGCAATCCCTTTCGTCGCTGGGGTGCT
GCTAGTGTCAGCATCTCAGGTTAGTGCTTTCGTTGCGGGCGCGAGAGGAT
CATGTTTCCGTGCGAGTCCGGCGCTTGCTGGTAGCTCATGCGCTGCCGTT
GGGGCATGGGGCTACGACAAGGACGTTAGCGGGTGTACGCTGGCTGATCG
AGTACATCGATGGGACACGCGGCTTCTTTCCGCCACGCCAGAAGATGTTG
ACGCTTCTAGCGCGGAAGACAGTGGCAGCGGCAGCGAGGAGGCGGATGCA
ATTTGGGCCCGGGCAGAGCTTCCTATGAGCAACGACGTGCAGGTTGAACA
AGCAACCCGCGCCGTCTGGCAGATGGCCTCACGGCGATGCTCTTCGGCAA
TCCCTTTCGTCGCTGGGGTGCTGCTAGTGTCAGCATCTCAGGTTAGTGCT
TTCGTTGCGGGCGCGAGAGGATCATGTTTCCGTGCGAGTCCGGCGCTTGC
TGGTAGCTCATGCGCTGCCGTTGGGGCATGGGGCTACGACAAGGACGTTA
GCGGGTGTACGCTGGCTGATCGAGTACATCGATGGGACACGCGGCTTCTT
TCCGCCACGCCAGAAGATGTTGACGCTTCTAGCGCGGAAGACAGTGGCAG
CGGCAGCGAGGAGGCGGATGCAATTTGGGCCCGGGCAGAGCTTCCTATGA
GCAACGACGTGCAGGTTGAACAAGCAACCCGCGCCGTCTGGCAGGCTCTG
TCTGACGGCAAAACCCGCCAGATTTTGAGGTTGTCGCTCCCCCTGATCGG
TGCCACGGAAATGGATGACTGGCCCGGAGGCGATCGCCAGCGGTACAAGG
CGTGTGGGCCGATGGTCGACTCGTTGCTGCGCGGGAACCCGGCAGCGAAG
GCTCTGTCTGACGGCAAAACCCGCCAGATTTTGAGGTTGTCGCTCCCCCT
GATCGGTGCCACGGAAATGGATGACTGGCCCGGAGGCGATCGCCAGCGGT
ACAAGGCGTGTGGGCCGATGGTCGACTCGTTGCTGCGCGGGAACCCGGCA
GCGAAGGAGGGAGCGTCTGTTGTGGAACAAATTCTGGATGAGTCCGACGC
GGTGGGGCTGATGCAGCTGCAGTGCAAGGAGGCCAAGGACGATGCGTCGA
TCATGATCTTCCCAACAACGGACACCCTCCCGCTGCAGAAACAGGAGGGA
GCGTCTGTTGTGGAACAAATTCTGGATGAGTCCGACGCGGTGGGGCTGAT
GCAGCTGCAGTGCAAGGAGGCCAAGGACGATGCGTCGATCATGATCTTCC
CAACAACGGACACCCTCCCGCTGCAGAAACAGGTAACGTCGGGAGCCGGA
TCCCGCCTCGTGGCGCTTGTCAACCCCGCGTGGAAGAGCGTCTCGGATTT
CGGGCTGTTCAAGTCCGGAGAGGCGGAGGAGGCGCTGTCTGAGTTCGAGG
TCACCTACTCGCTCCAAAGCCTCGTCGTCTACGGCTACACGGTAACGTCG
GGAGCCGGATCCCGCCTCGTGGCGCTTGTCAACCCCGCGTGGAAGAGCGT
CTCGGATTTCGGGCTGTTCAAGTCCGGAGAGGCGGAGGAGGCGCTGTCTG
AGTTCGAGGTCACCTACTCGCTCCAAAGCCTCGTCGTCTACGGCTACACG
CTGCGGCTTCTGTACTGCTACCCTGGCCCTTGGCGGCTATTCCTCGTGGG
AGAGGACACCGGGAAGAGAGAGCTGCTCGGCTCCTGGGAGAAAACCCCGC
CGAACGAGGAAGTGGAGAAGGCGGTGTTCGGCAAGATGGGCAAGCCGAAC
GCGTCCGAGAGAGTTCAGGCCAGCGCCAAGTTTTTCCAGGACGGCATGTG
ACTGCGGCTTCTGTACTGCTACCCTGGCCCTTGGCGGCTATTCCTCGTGG
GAGAGGACACCGGGAAGAGAGAGCTGCTCGGCTCCTGGGAGAAAACCCCG
CCGAACGAGGAAGTGGAGAAGGCGGTGTTCGGCAAGATGGGCAAGCCGAA
CGCGTCCGAGAGAGTTCAGGCCAGCGCCAAGTTTTTCCAGGACGGCATGT
GA
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