mRNA_L-elsbetiae_contig13275.2543.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13275.2543.1
Unique NamemRNA_L-elsbetiae_contig13275.2543.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13275.2543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13275contigL-elsbetiae_contig13275:1838..3866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size284
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13275.2543.1prot_L-elsbetiae_contig13275.2543.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13275 1871..3795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.9728978-UTR-L-elsbetiae_contig13275:1837..18701622815503.9728978-UTR-L-elsbetiae_contig13275:1837..1870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13275 1838..1870 +
1691682930.442733-UTR-L-elsbetiae_contig13275:1837..18701691682930.442733-UTR-L-elsbetiae_contig13275:1837..1870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13275 1838..1870 +
1622815504.0101032-UTR-L-elsbetiae_contig13275:3795..38661622815504.0101032-UTR-L-elsbetiae_contig13275:3795..3866Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13275 3796..3866 +
1691682930.46794-UTR-L-elsbetiae_contig13275:3795..38661691682930.46794-UTR-L-elsbetiae_contig13275:3795..3866Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13275 3796..3866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.9858139-CDS-L-elsbetiae_contig13275:1870..19201622815503.9858139-CDS-L-elsbetiae_contig13275:1870..1920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13275 1871..1920 +
1691682930.451486-CDS-L-elsbetiae_contig13275:1870..19201691682930.451486-CDS-L-elsbetiae_contig13275:1870..1920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13275 1871..1920 +
1622815503.999774-CDS-L-elsbetiae_contig13275:3665..37951622815503.999774-CDS-L-elsbetiae_contig13275:3665..3795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13275 3666..3795 +
1691682930.4598937-CDS-L-elsbetiae_contig13275:3665..37951691682930.4598937-CDS-L-elsbetiae_contig13275:3665..3795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13275 3666..3795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13275.2543.1

>prot_L-elsbetiae_contig13275.2543.1 ID=prot_L-elsbetiae_contig13275.2543.1|Name=mRNA_L-elsbetiae_contig13275.2543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MANCRDLQARGMQTSTRSRPSSPANAVLQGLSPCCGYGLNTYRMNRSHPS
QRLSLVHAA*
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mRNA from alignment at L-elsbetiae_contig13275:1838..3866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13275.2543.1 ID=mRNA_L-elsbetiae_contig13275.2543.1|Name=mRNA_L-elsbetiae_contig13275.2543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2029bp|location=Sequence derived from alignment at L-elsbetiae_contig13275:1838..3866+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACCTCAACTACGGGTCTATTTGAAACGACGATGGCGAACTGCAGGGA
CTTGCAAGCACGAGGGATGCAAACCTCAACGCGGTAAGCACCTTGTAGCT
TGCATACATATATTGCATGGCTTGCATATGTTACGGTATCACTGTTTCCA
CCTCTTCTCCCTCGTGGTTGCGTAGGTGCGTAAGATAACACCCCCCCCTA
GGCCGTCTACATCAGCATACCTTTCAGCAATTGTCTACATGTACTCTCGC
TTCATCATCAGTAGTAAGGGTTATGAAGACCAATGCATCCTCACAAAGCT
CGATTAGCTACATAGTTTCCTGTGGACTATGGGGCACTGGCCCGCCCTCC
TTGTTTTCCGGTGCAGAGTTACTGGAACTAAATTTCAAGGGGGCGCATAT
GCGGGAGGATTTCAAGGAGGCGCATTCTGTCACGGCCAAGGGCACAGGGC
CTCAGTACGCCCACACATGCAGAAGCCGATATCTCAGCTTGCAGGGAGTG
ATCTAAAACGCGACTTTGAGGCTGTGTAGTAGAGATGTGTGGCTACAGAG
CGAGCCAAAAATCTAGGTGGTAGCTTCTGCTTGGCATTTAGAGGTGCCGT
CGCAAAAAAATGATAGGGAAGAGAGACGGAGAGTCGAAAAAAGAGAGCCA
GCTGCGAGACAGACGAGCACGATTCCTATACGAAACGCAACGCAGCTTCT
TGATTCCTGAAGAGATCCATCGCAAGACCGCGCACGTCGGCAAGAAGAGG
GTCTCAGATGCAGCACCCACTAAAATGAGCTAACTCGTTGCGCGGCAATT
AGACGAGCTGCTGCCGTCTGCTGCTGCCGGCCTGGCCGAGGGCACCAACG
TGTGCGGGAAGGCAGCTCTGATTCGACACTCACAGACCGATTCTGAGTTT
AAAATCTGTACCGGCACTAGCTATGAGCAACATATCGCACCCCCTCTACT
TTGTTTGGTCTGGGATGGGTTATGTGAGCTCCTAGGGTTGGCGCAGTGGT
GTCAGCGAGGCCATAAGAGGGCGGGGGCTTCTGGTGGGGGGGTCTTTAAT
GCGCGTAATTTTTGTCTGCGAGTCCCCGACGAACATGAGATCGGTGTAAA
TCATCCTCACGCCGCCGCTAGAGCATCGATTCGCTTCGTTATTTTTCCTA
CACCCTCGAGAAGTACAAGAGCTACAGATCTGTTATTTCCTCACCACCAA
CACGGCACTCTGCGGCGAGAACTCGAAGTGAAGGAGCGCAATAAGTGCCC
CCTTAAAATATAATCCAAATAACACTGGGTGGTGCCGGCGCGCCTTTGGA
ATGGCGAGGGGTCCACAGACAGGACTTGAGTGCATTTTTGGGTATGCTGA
AACTGACAGCACCGGCCCTCCCAAAAGCAACACTTTCCAGTTCGGCCCTT
TAGCGTCCCGCAGCGATATGAAGTAACCCACTGCAACGCCACAGAGTAGT
AGTTGCAGTTCTCTACAGAAAAATGCTACGCTCCGAAATTTGTATATAGG
TAGCTGTTTCGGAGGCGGAAATGTTGCTCTCGGAGGTGCCAAAACCAGTG
ATTTCACAGGACTATGACAGACACCTCCACCTGTCAGGAGATCAGATAGC
TCGCCACTCACAGACAAGAACAGCGGCATCTTTCGTGTGCTTGTGGGGAA
GTAACAAGGCCGGCTACGCTCGTTGTGCGCCTATTTCTCAATGCGATTTG
TGCGTTTGTGTGTTTTCTCATGTTTGAGTGCCATGCACATGTTATCGCCG
TCTCGCACATAAAAACCCCACTCTCGCATTGTAAGCACGATCGCACTTTT
TTCCACGCTTGTGTGTGTTCATTTCCAGATCACGCCCATCTTCGCCGGCC
AATGCCGTCCTTCAGGGATTGTCTCCGTGTTGCGGCTACGGCTTAAACAC
CTACCGGATGAACCGATCTCACCCATCCCAACGGTTGTCCTTGGTGCATG
CAGCCTGAGGTATGCCTAGAGTCTGTATAAGTTTATGGAGATGCTTCGTG
CTCTGCATTTTGATTTTCTCGAATGCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13275:1838..3866+

>mRNA_L-elsbetiae_contig13275.2543.1 ID=mRNA_L-elsbetiae_contig13275.2543.1|Name=mRNA_L-elsbetiae_contig13275.2543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig13275:1838..3866+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACTGCAGGGACTTGCAAGCACGAGGGATGCAAACCTCAACGCG
ATGGCGAACTGCAGGGACTTGCAAGCACGAGGGATGCAAACCTCAACGCG
ATCACGCCCATCTTCGCCGGCCAATGCCGTCCTTCAGGGATTGTCTCCGT
GTTGCGGCTACGGCTTAAACACCTACCGGATGAACCGATCTCACCCATCC
CAACGGTTGTCCTTGGTGCATGCAGCCTGAATCACGCCCATCTTCGCCGG
CCAATGCCGTCCTTCAGGGATTGTCTCCGTGTTGCGGCTACGGCTTAAAC
ACCTACCGGATGAACCGATCTCACCCATCCCAACGGTTGTCCTTGGTGCA
TGCAGCCTGA
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