mRNA_L-elsbetiae_contig13268.2537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13268.2537.1
Unique NamemRNA_L-elsbetiae_contig13268.2537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13268.2537.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.080e-10
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:   71 SSNLRVIRLFIDAGADTTSTVRVKNFAGVILY-DTPLTFAVRLLREKTINGKDFTE 235
            S N R++RL +DAGADTTSTVRV N  G + Y DTPL     LLREK ++GK  TE
Sbjct:   75 SGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATE 130
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BLAST of mRNA_L-elsbetiae_contig13268.2537.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.130e-6
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 2 
Query:   65 LGSSNLRVIRLFIDAGADTTSTVRVKNFAGVILY-DTPLTFAVRLLREKTINGKDFTE 235
            L S + RV+RLF+DAGADT STVR+ N  GV L+  TPL +   LLR++   G D T+
Sbjct:  460 LRSGSPRVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARGIDSTK 517
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BLAST of mRNA_L-elsbetiae_contig13268.2537.1 vs. uniprot
Match: D7FYA6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA6_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.560e-5
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 2 
Query:   47 LARTFVLGSSNLRVIRLFIDAGADTTSTVRVKNFAGVILYD-TPLTFAVRLLREKTINGKDFTE 235
            + R  + GS   RV+RLF+DAGADT STVR+ N  GV ++  TPL +   LLR++     D T+
Sbjct:  428 IGRALLSGSP--RVLRLFLDAGADTASTVRIANKEGVEVFSGTPLAYTTWLLRDQQAQAIDSTK 489
[Close]
BLAST of mRNA_L-elsbetiae_contig13268.2537.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 8.910e-5
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 2 
Query:   83 RVIRLFIDAGADTTSTVRVKNF-AGVILYDTPLTFAVRLLREKTI-NGKDFTE 235
            R++R+ +DAGADTTS V+V N   GV+  DTPL F    LR+K + +GK  T+
Sbjct:  399 RIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATK 451
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13268.2537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSC5_ECTSI2.080e-1058.93EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KSA9_9PHAE1.130e-651.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYA6_ECTSI2.560e-545.31Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FT11_ECTSI8.910e-549.06EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13268contigL-elsbetiae_contig13268:3002..3432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size241
Cds size168
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13268.2537.1prot_L-elsbetiae_contig13268.2537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13268 3075..3432 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.5188086-UTR-L-elsbetiae_contig13268:3001..30741622815503.5188086-UTR-L-elsbetiae_contig13268:3001..3074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13268 3002..3074 -
1691682930.1638243-UTR-L-elsbetiae_contig13268:3001..30741691682930.1638243-UTR-L-elsbetiae_contig13268:3001..3074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13268 3002..3074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.5292788-CDS-L-elsbetiae_contig13268:3074..31581622815503.5292788-CDS-L-elsbetiae_contig13268:3074..3158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13268 3075..3158 -
1691682930.176549-CDS-L-elsbetiae_contig13268:3074..31581691682930.176549-CDS-L-elsbetiae_contig13268:3074..3158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13268 3075..3158 -
1622815503.5393877-CDS-L-elsbetiae_contig13268:3348..34321622815503.5393877-CDS-L-elsbetiae_contig13268:3348..3432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13268 3349..3432 -
1691682930.1851633-CDS-L-elsbetiae_contig13268:3348..34321691682930.1851633-CDS-L-elsbetiae_contig13268:3348..3432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13268 3349..3432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13268.2537.1

>prot_L-elsbetiae_contig13268.2537.1 ID=prot_L-elsbetiae_contig13268.2537.1|Name=mRNA_L-elsbetiae_contig13268.2537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
TSRSLTRSFTSFSVHPRTYLRTRFKQSKSYPAVHRRRSGHDIDRSSEELR
RGYSL*
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mRNA from alignment at L-elsbetiae_contig13268:3002..3432-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13268.2537.1 ID=mRNA_L-elsbetiae_contig13268.2537.1|Name=mRNA_L-elsbetiae_contig13268.2537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=431bp|location=Sequence derived from alignment at L-elsbetiae_contig13268:3002..3432- (Laminarionema elsbetiae ELsaHSoW15)
ACCTCACGGAGTTTAACACGGTCTTTCACCAGCTTCTCGGTTCATCCTCG
CACGTACCTTCGTACTCGGTTCAAGCAATCTAAGGTCAGAGGAAACAGAG
TGTGACATCGAGAGCGGCTCTCAGCCAGCCGACCCTCTCTACCACACACA
ACTCTAGACCCGAGTCCTCCTATCAGGAGGCCTCCTTTTGTTTGGTAATA
GTAAACACCCGGGATAACCTCAGCACAACGCCCGTGCAATATGATGTTGG
CTTCGCTGGCCCTTTGTCGGCCAGAGTTATCCGGCTGTTCATAGACGCCG
GAGCGGACACGACATCGACCGTTCGAGTGAAGAACTTCGCAGGGGTTATT
CTCTATGATACGCCGCTGACATTCGCCGTTCGTCTACTCCGCGAGAAAAC
CATCAACGGAAAGGACTTCACAGAGAACCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13268:3002..3432-

>mRNA_L-elsbetiae_contig13268.2537.1 ID=mRNA_L-elsbetiae_contig13268.2537.1|Name=mRNA_L-elsbetiae_contig13268.2537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig13268:3002..3432- (Laminarionema elsbetiae ELsaHSoW15)
ACCTCACGGAGTTTAACACGGTCTTTCACCAGCTTCTCGGTTCATCCTCG
CACGTACCTTCGTACTCGGTTCAAGCAATCTAAGACCTCACGGAGTTTAA
CACGGTCTTTCACCAGCTTCTCGGTTCATCCTCGCACGTACCTTCGTACT
CGGTTCAAGCAATCTAAGAGTTATCCGGCTGTTCATAGACGCCGGAGCGG
ACACGACATCGACCGTTCGAGTGAAGAACTTCGCAGGGGTTATTCTCTAT
GAAGTTATCCGGCTGTTCATAGACGCCGGAGCGGACACGACATCGACCGT
TCGAGTGAAGAACTTCGCAGGGGTTATTCTCTATGA
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