mRNA_L-elsbetiae_contig13262.2533.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE) HSP 1 Score: 234 bits (597), Expect = 1.350e-70 Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 1 Query: 1 RCKAVLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALFCEWVINAPDGYGRGTQGNAPARGPWDE 363 RCK+VLNRLCCN D IAFLESVDPAEVPGYHTKITRP++MRLVD+RLKRGGYLNEFAFASD RLAWSNAKLFN EGS+LW+AADRLSREFEALFCEWVIN PDGYGRGTQGNAPARG WD+ Sbjct: 576 RCKSVLNRLCCNEDAIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYLNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEWVINPPDGYGRGTQGNAPARGTWDD 696
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI) HSP 1 Score: 238 bits (606), Expect = 2.660e-70 Identity = 109/121 (90.08%), Postives = 117/121 (96.69%), Query Frame = 1 Query: 1 RCKAVLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALFCEWVINAPDGYGRGTQGNAPARGPWDE 363 RCK+VLNRLCCN DVIAFLESVDPAEVPGYHTKITRP++MRLVD+RLKRGGY+NEFAFASD RLAWSNAKLFN EGS+LW+AADRLSREFEALFCEWVIN PDGYGRGTQGNAPARGPWD+ Sbjct: 552 RCKSVLNRLCCNEDVIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYVNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEWVINPPDGYGRGTQGNAPARGPWDD 672
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A836CNY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNY5_9STRA) HSP 1 Score: 140 bits (352), Expect = 4.420e-36 Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 1 Query: 1 RCKAVLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALFCEWVINAPDGYGRGTQGNAPA-RGPWDE 363 RCKAVLN +CC+ D+ FLE+VDPAE P Y + RP+YMRLVDERLK G Y+NEF+FA+D RLA++NA+ +N EGS+LW AA ++R+FE +F +WV+ D + G A RG WD+ Sbjct: 581 RCKAVLNAVCCHADINPFLEAVDPAEAPDYALVVRRPVYMRLVDERLKAGMYVNEFSFAADMRLAFANAQRYNAEGSELWRAAAAIARDFERMFLQWVVAPADAGVDASSGEPRAPRGAWDD 702
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A482RQT6_9ARCH (Bromo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQT6_9ARCH) HSP 1 Score: 112 bits (280), Expect = 3.910e-27 Identity = 60/123 (48.78%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 1 RCKAVLNRLCCNVDVIAFLESVDPAEVPG--YHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALFCEWVINAPDGYGRGTQGNAPARGPWDE 363 RC+AVLNRLC + D FL++VDP G Y+ I PM++R V RL RG Y +EF FA D RL + N ++FN E S L+MA+ RLS +FE LFC WV+N D ARGPWD+ Sbjct: 168 RCRAVLNRLCISPDAPPFLDAVDPQSDIGVAYYEAIKAPMWIREVHSRLLRGDYESEFDFAWDVRLVFRNCQIFNREDSALYMASQRLSMQFETLFCAWVLNVVD-----KDVTQRARGPWDD 285
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A103XWF2_CYNCS (Bromodomain-containing protein n=5 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XWF2_CYNCS) HSP 1 Score: 65.9 bits (159), Expect = 4.400e-10 Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1 Query: 1 RCKAVLNRLCCNVDVIAFLESVDPAE--VPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFE 273 +C+ +LNRL + F VD E +P Y+T I PM + V +L G Y++++AFA+D RL +SNA +N G+D+ + A+ LS+ FE Sbjct: 212 QCETLLNRLMSHNFGWVFNTPVDVVELNIPDYYTVIKHPMDLGTVKTKLTSGRYMDQWAFAADVRLTFSNAMTYNPRGNDVHLMAETLSKFFE 304
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A1R2BG72_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BG72_9CILI) HSP 1 Score: 62.4 bits (150), Expect = 6.200e-9 Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = 1 Query: 13 VLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEAL 279 +++ + N + FL V+ E P Y+ KIT PM + ++ +L G Y++ FA D RL W+N+ +N + S L+ LS +FE L Sbjct: 82 IISEMKKNPYIAPFLHPVNKKEYPDYYEKITEPMDLSTIENKLLCGEYISSHQFAHDMRLIWNNSFFYNAKNSHLYSLTLELSMQFERL 170
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A5E3WHI7_9AGAM (Transcription initiation factor TFIID subunit 2 n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WHI7_9AGAM) HSP 1 Score: 60.8 bits (146), Expect = 2.620e-8 Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 1 Query: 1 RCKAVLNRLCCNVDVIAFLESVDPA--EVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALFCEWV 294 +CK VL L + + FL VDP P Y +I +PM +R +DE+LKRG Y FA+D L ++N + FN G+ AD L R F+ EW Sbjct: 1663 KCKDVLRNLGKLPEAMIFLRPVDPHLDGCPTYFDEIKKPMDLRTMDEKLKRGDYTTMEQFAADMNLIFTNCRTFNPVGTYPTECADGLERAFKK---EWA 1759
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A1Y2FMN7_9FUNG (Transcription initiation factor TFIID subunit 2 n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FMN7_9FUNG) HSP 1 Score: 60.5 bits (145), Expect = 3.600e-8 Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 4 CKAVLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALF 282 C++++ +L N + AF + V P VP YH I +PM + L Y F SD +L ++N FN+EGSDL++AA +L F+ L+ Sbjct: 2450 CESMIRKLLRNPNSAAFKDPV-PTTVPMYHEIIKKPMDFTTLKSNLDNKKYSTLKEFKSDVKLIFNNCYTFNMEGSDLFIAAQKLEANFDELW 2541
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A7S1HEN7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEN7_HEMAN) HSP 1 Score: 60.1 bits (144), Expect = 4.140e-8 Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 1 Query: 1 RCKAVLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALF 282 +CK L L + F + V+ E P Y T I PM + + +++ +G Y++ FA+D RL W NA ++N G ++ AA +LS FE + Sbjct: 70 KCKNALKVLMNHNKAYFFKDPVNLEEAPDYLTLIETPMDLSTIKDKMDKGAYVHHKDFATDVRLVWENAMVYNNGGDEVHEAAKKLSDMFEERY 163
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Match: A0A7S0NWY3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NWY3_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 5.790e-8 Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 1 Query: 4 CKAVLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGGYLNEFAFASDARLAWSNAKLFNLEGSDLWMAADRLSREFEALFCE 288 C +L L + F VDP P Y++ IT PM + + ++L Y N FA D + WSNA L+N EG+D+ A L +FEA + + Sbjct: 144 CHKLLKELMRHPMAYPFSAPVDPNLYPDYYSTITVPMDLSTIKKKLDGAEYENPDEFAEDVQQVWSNAYLYNKEGTDVHTMARTLQSKFEADYAK 238 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13262.2533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13262.2533.1 >prot_L-elsbetiae_contig13262.2533.1 ID=prot_L-elsbetiae_contig13262.2533.1|Name=mRNA_L-elsbetiae_contig13262.2533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp RCKAVLNRLCCNVDVIAFLESVDPAEVPGYHTKITRPMYMRLVDERLKRGback to top mRNA from alignment at L-elsbetiae_contig13262:877..3692- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13262.2533.1 ID=mRNA_L-elsbetiae_contig13262.2533.1|Name=mRNA_L-elsbetiae_contig13262.2533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2816bp|location=Sequence derived from alignment at L-elsbetiae_contig13262:877..3692- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13262:877..3692- >mRNA_L-elsbetiae_contig13262.2533.1 ID=mRNA_L-elsbetiae_contig13262.2533.1|Name=mRNA_L-elsbetiae_contig13262.2533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig13262:877..3692- (Laminarionema elsbetiae ELsaHSoW15)back to top |