mRNA_L-elsbetiae_contig13261.2532.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13261.2532.1
Unique NamemRNA_L-elsbetiae_contig13261.2532.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13261.2532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13261contigL-elsbetiae_contig13261:856..2928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1070
Cds size1068
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13261.2532.1prot_L-elsbetiae_contig13261.2532.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13261 856..2927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.1576626-CDS-L-elsbetiae_contig13261:855..14161622815503.1576626-CDS-L-elsbetiae_contig13261:855..1416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13261 856..1416 +
1691682929.9831343-CDS-L-elsbetiae_contig13261:855..14161691682929.9831343-CDS-L-elsbetiae_contig13261:855..1416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13261 856..1416 +
1622815503.1713095-CDS-L-elsbetiae_contig13261:2144..24351622815503.1713095-CDS-L-elsbetiae_contig13261:2144..2435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13261 2145..2435 +
1691682929.9926322-CDS-L-elsbetiae_contig13261:2144..24351691682929.9926322-CDS-L-elsbetiae_contig13261:2144..2435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13261 2145..2435 +
1622815503.1877708-CDS-L-elsbetiae_contig13261:2711..29271622815503.1877708-CDS-L-elsbetiae_contig13261:2711..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13261 2712..2927 +
1691682930.002203-CDS-L-elsbetiae_contig13261:2711..29271691682930.002203-CDS-L-elsbetiae_contig13261:2711..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13261 2712..2927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13261.2532.1

>prot_L-elsbetiae_contig13261.2532.1 ID=prot_L-elsbetiae_contig13261.2532.1|Name=mRNA_L-elsbetiae_contig13261.2532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp
SGSSIGGGGGSGNFCAFGCNDSKGATPRILNFRAASTAAAGSHGKLAAQR
PTFHFGAAPSAAVTVTREACELKIATSSLVRSCAVAAAETSANSTAGVQG
CDAAAVSIEVDEPGPRAETSLVLYRAQPAETGLAAEIQVCDAAAVSIEVG
GLHARGEDEPGPPAETSLVPYQRPPAETRLTVVAQSVNNPLGKGPRRQRG
RQSRARRDNRLAAQDKAALATTHSAAVATREVATAKRKAADAMVAAKGSA
AEDAAEPKTDSQAVGMAPMHTHNGGGGGGSDSDQTGGAATATPTIRLRIE
EPGAAPAQAQSTAQGRCDGEKTAERRRLLAEAAKAEAEAETAEAEVRVAE
TKAARW
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mRNA from alignment at L-elsbetiae_contig13261:856..2928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13261.2532.1 ID=mRNA_L-elsbetiae_contig13261.2532.1|Name=mRNA_L-elsbetiae_contig13261.2532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2073bp|location=Sequence derived from alignment at L-elsbetiae_contig13261:856..2928+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCAGCAGCATTGGCGGCGGCGGCGGCAGTGGCAATTTTTGTGCATT
CGGCTGTAACGATAGCAAGGGCGCCACACCGCGGATATTGAACTTCCGGG
CCGCATCGACGGCGGCAGCTGGCTCCCATGGCAAGCTCGCTGCGCAGCGG
CCGACGTTTCACTTCGGTGCCGCACCGTCGGCGGCGGTAACGGTGACACG
GGAAGCTTGCGAGCTGAAAATAGCCACGTCTTCGTTGGTCCGATCATGCG
CCGTCGCCGCAGCGGAGACGTCTGCAAACAGCACCGCTGGAGTGCAGGGC
TGCGACGCAGCGGCGGTGTCGATTGAGGTAGACGAGCCCGGCCCGCGGGC
CGAAACCAGCCTCGTTCTGTATCGAGCGCAGCCGGCGGAGACCGGTCTGG
CCGCTGAAATTCAGGTCTGCGACGCAGCTGCGGTATCCATTGAGGTAGGC
GGACTGCACGCGAGGGGCGAAGACGAGCCTGGCCCGCCGGCCGAAACCAG
CCTCGTTCCGTATCAACGGCCGCCGGCGGAGACCCGTCTGACCGTCGTCG
CACAGAGCGTGGTGAGCTTTTGTTTAGTGTACCTGCAGTTGCAATATTTC
TTTGGTCTGGTCGGTATATGTATCGTTTTTTGCAGGGATGTTCACGGGTC
AGGTCAACCTGACGGGTCAGGTGCGGGTCAGGTGCGGGTCAGCTGACCCG
ACCCGACCCATCAGATTTTTCCATCCCGGGTCATTGACCCGACCCGACCC
GTCAAATTTTCCATCCCGGGTCACTTGACCCGACCCGACCCGCCGAACGG
GTCAAACACCTTGACCCGACCCGACCCAACTCGTCAGATTTCAAATCCGC
CTGACCCGACCCGACCCGACCCGACCCGTCACATTGGTCACCTGACCCGA
CCCGTCACATTTTGGTAGCCCGGGTCATCGACCCGACATGACCCGTCATA
TTTTTCCATCCCGGGTCACTGACCCGACCCGACCCGTCAAACGGGTGAAG
CGTCTTGACCCGACCCGCGGGTCCGGTCATGACCCGTGAACATCCCTGGT
TTTTTGTGTGCGGAGTTCATGATAGTGTAAATAGCAGAAAAAACACGAGA
CTCCCCGCCTCAATCAATGCGTAGTTCGATTGGTCAACGGCGTGTTAGTC
CTTTGCGACTTGCTGTATTCCTAATGAGTACTACTGGACAGGGCAAGGAA
CGGGCAAGTGGGCGTGGCTTACCCCCCCCCCCCCCCCCCCTCGATCGCGC
GCCGGCCGCCCTTGCATGCGACGCGCTCCTGCTCAAAAGAATAACCCACT
TGGAAAAGGGCCGCGTAGGCAGCGTGGGCGCCAGAGCAGGGCGCGGCGCG
ACAATCGGTTGGCGGCCCAGGACAAGGCCGCGCTCGCCACCACGCATAGT
GCGGCCGTGGCTACGCGTGAAGTGGCCACGGCTAAGCGTAAAGCGGCCGA
CGCCATGGTCGCAGCCAAGGGAAGTGCGGCCGAGGACGCGGCCGAGCCTA
AGACGGACTCCCAGGCGGTGGGGATGGCGCCGATGCATACCCACAACGGA
GGAGGGGGAGGAGGAAGCGATTCGGACCAGGTAGGCAACCGGTGTAGACT
CGGTGGTGTCGGTCATGGTCATGAGGCGTTTTGCGTTGAATGTAGGAGGG
ATCGATGAGTTTGCAGTTTGAGCACCAACCCCCGGTAGTGCATGCACTCG
GGTAGTAATGTATGGTAGACTGCACGCTGCTGCGGCGATTCGTGCATGAT
GTTTTCAATGGCAAGATTCACTTACCCCGGACAAGCTTATCCTGCCCCCC
CCTCCTCCCTCCTGACACTTCACACTCGTTTGGTTCTGTGGTCTTGCATG
GCGAAGACCGGAGGGGCCGCCACGGCGACCCCGACCATCAGGCTACGGAT
CGAGGAACCCGGCGCTGCACCGGCGCAGGCGCAGAGCACGGCACAAGGCA
GGTGCGACGGCGAGAAGACGGCAGAACGCCGAAGGCTGCTAGCGGAAGCC
GCGAAAGCCGAGGCCGAGGCTGAAACGGCGGAGGCTGAGGTCAGGGTGGC
GGAGACCAAGGCCGCAAGGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13261:856..2928+

>mRNA_L-elsbetiae_contig13261.2532.1 ID=mRNA_L-elsbetiae_contig13261.2532.1|Name=mRNA_L-elsbetiae_contig13261.2532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig13261:856..2928+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCAGCAGCATTGGCGGCGGCGGCGGCAGTGGCAATTTTTGTGCATT
CGGCTGTAACGATAGCAAGGGCGCCACACCGCGGATATTGAACTTCCGGG
CCGCATCGACGGCGGCAGCTGGCTCCCATGGCAAGCTCGCTGCGCAGCGG
CCGACGTTTCACTTCGGTGCCGCACCGTCGGCGGCGGTAACGGTGACACG
GGAAGCTTGCGAGCTGAAAATAGCCACGTCTTCGTTGGTCCGATCATGCG
CCGTCGCCGCAGCGGAGACGTCTGCAAACAGCACCGCTGGAGTGCAGGGC
TGCGACGCAGCGGCGGTGTCGATTGAGGTAGACGAGCCCGGCCCGCGGGC
CGAAACCAGCCTCGTTCTGTATCGAGCGCAGCCGGCGGAGACCGGTCTGG
CCGCTGAAATTCAGGTCTGCGACGCAGCTGCGGTATCCATTGAGGTAGGC
GGACTGCACGCGAGGGGCGAAGACGAGCCTGGCCCGCCGGCCGAAACCAG
CCTCGTTCCGTATCAACGGCCGCCGGCGGAGACCCGTCTGACCGTCGTCG
CACAGAGCGTGAGCGGCAGCAGCATTGGCGGCGGCGGCGGCAGTGGCAAT
TTTTGTGCATTCGGCTGTAACGATAGCAAGGGCGCCACACCGCGGATATT
GAACTTCCGGGCCGCATCGACGGCGGCAGCTGGCTCCCATGGCAAGCTCG
CTGCGCAGCGGCCGACGTTTCACTTCGGTGCCGCACCGTCGGCGGCGGTA
ACGGTGACACGGGAAGCTTGCGAGCTGAAAATAGCCACGTCTTCGTTGGT
CCGATCATGCGCCGTCGCCGCAGCGGAGACGTCTGCAAACAGCACCGCTG
GAGTGCAGGGCTGCGACGCAGCGGCGGTGTCGATTGAGGTAGACGAGCCC
GGCCCGCGGGCCGAAACCAGCCTCGTTCTGTATCGAGCGCAGCCGGCGGA
GACCGGTCTGGCCGCTGAAATTCAGGTCTGCGACGCAGCTGCGGTATCCA
TTGAGGTAGGCGGACTGCACGCGAGGGGCGAAGACGAGCCTGGCCCGCCG
GCCGAAACCAGCCTCGTTCCGTATCAACGGCCGCCGGCGGAGACCCGTCT
GACCGTCGTCGCACAGAGCGTGAATAACCCACTTGGAAAAGGGCCGCGTA
GGCAGCGTGGGCGCCAGAGCAGGGCGCGGCGCGACAATCGGTTGGCGGCC
CAGGACAAGGCCGCGCTCGCCACCACGCATAGTGCGGCCGTGGCTACGCG
TGAAGTGGCCACGGCTAAGCGTAAAGCGGCCGACGCCATGGTCGCAGCCA
AGGGAAGTGCGGCCGAGGACGCGGCCGAGCCTAAGACGGACTCCCAGGCG
GTGGGGATGGCGCCGATGCATACCCACAACGGAGGAGGGGGAGGAGGAAG
CGATTCGGACCAGAATAACCCACTTGGAAAAGGGCCGCGTAGGCAGCGTG
GGCGCCAGAGCAGGGCGCGGCGCGACAATCGGTTGGCGGCCCAGGACAAG
GCCGCGCTCGCCACCACGCATAGTGCGGCCGTGGCTACGCGTGAAGTGGC
CACGGCTAAGCGTAAAGCGGCCGACGCCATGGTCGCAGCCAAGGGAAGTG
CGGCCGAGGACGCGGCCGAGCCTAAGACGGACTCCCAGGCGGTGGGGATG
GCGCCGATGCATACCCACAACGGAGGAGGGGGAGGAGGAAGCGATTCGGA
CCAGACCGGAGGGGCCGCCACGGCGACCCCGACCATCAGGCTACGGATCG
AGGAACCCGGCGCTGCACCGGCGCAGGCGCAGAGCACGGCACAAGGCAGG
TGCGACGGCGAGAAGACGGCAGAACGCCGAAGGCTGCTAGCGGAAGCCGC
GAAAGCCGAGGCCGAGGCTGAAACGGCGGAGGCTGAGGTCAGGGTGGCGG
AGACCAAGGCCGCAAGGTGGACCGGAGGGGCCGCCACGGCGACCCCGACC
ATCAGGCTACGGATCGAGGAACCCGGCGCTGCACCGGCGCAGGCGCAGAG
CACGGCACAAGGCAGGTGCGACGGCGAGAAGACGGCAGAACGCCGAAGGC
TGCTAGCGGAAGCCGCGAAAGCCGAGGCCGAGGCTGAAACGGCGGAGGCT
GAGGTCAGGGTGGCGGAGACCAAGGCCGCAAGGTGG
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