mRNA_L-elsbetiae_contig13252.2529.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13252.2529.1
Unique NamemRNA_L-elsbetiae_contig13252.2529.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: D7G0W4_ECTSI (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W4_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 1.200e-82
Identity = 147/180 (81.67%), Postives = 155/180 (86.11%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            RN VMVVVTLLFMFYLSWRLSLVAFISVPAIV VSK YG YIRKLSKLSQDKLAEAGSVAEESLGSM+TVRSFAAEGRES+EYA KLQD               R   +YVLSK+G YAYGFYA+S+VLLPNLVTAVVLFYGGQLVM GQ+TGGKVVSFMIYLTSLSDGFNDMA+IFSSM
Sbjct:  210 RNLVMVVVTLLFMFYLSWRLSLVAFISVPAIVIVSKWYGEYIRKLSKLSQDKLAEAGSVAEESLGSMSTVRSFAAEGRESKEYAKKLQDRTPTSPTLPHTSYTSRLS-FYVLSKRGSYAYGFYASSYVLLPNLVTAVVLFYGGQLVMDGQITGGKVVSFMIYLTSLSDGFNDMAAIFSSM 388
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A835YSY9_9STRA (ABC transporter type 1, transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSY9_9STRA)

HSP 1 Score: 187 bits (476), Expect = 6.850e-53
Identity = 106/180 (58.89%), Postives = 131/180 (72.78%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            RNFV    TLLFMFYLSWRLS VAF+SVPAIV VS+ YG++IR L+K  Q++LAEA +VAEE+LGSMTTVRSFAAEGRES  Y  +L D                   YY L+ +   AYG YA++  LLP LVT +VLFYGG++V+ GQ+ GG VV+FM+YL+SLSDGFN+M +IFSS+
Sbjct:  204 RNFVQAAGTLLFMFYLSWRLSTVAFVSVPAIVGVSRYYGHFIRDLAKQVQERLAEANAVAEEALGSMTTVRSFAAEGRESAAYGARLHD-------------------YYALAIREAAAYGAYASTAALLPQLVTVLVLFYGGRMVLAGQLDGGSVVAFMLYLSSLSDGFNNMGAIFSSI 364
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A7S4DAM6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAM6_HETAK)

HSP 1 Score: 163 bits (412), Expect = 7.790e-48
Identity = 90/180 (50.00%), Postives = 125/180 (69.44%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+ V  + TL+FMFYLSW++S+VAF+SVP IV +SK YG Y++KLSK +QD LA+A + AEE+L SMTT+RSFA E  E+ EYA +L                    +YY L+ +  + Y FYA S V LP  VTA+VL YGG+LV++G+++ GK+V+F++YL SLS+ F+ M SIFSS+
Sbjct:   16 RSAVQAIGTLMFMFYLSWKISMVAFVSVPVIVLISKFYGRYLQKLSKKTQDALADANTTAEETLSSMTTIRSFACEDCEALEYARRLG-------------------VYYALNIQEAWCYSFYAMSTVFLPQSVTALVLLYGGRLVLEGEISSGKLVTFLLYLGSLSEAFSTMGSIFSSI 176
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: W7TKE5_9STRA (Atp-binding cassette sub-family b member 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKE5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.480e-42
Identity = 97/181 (53.59%), Postives = 124/181 (68.51%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVM-QGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+ V  V TL+FMF  SW+LSLVAF+SVP IV +SK+YG YIRKLSK +Q++LA A S+AEE L +M TVRSFA    + R Y GKL +                   YY L+K+   AYG YA +  LLPNLVTA+VLFYGGQLV+ Q  +T G++VSF++ L SLS+GF++M SIFSS+
Sbjct:  480 RSLVQAVGTLIFMFIQSWKLSLVAFVSVPVIVIMSKIYGQYIRKLSKATQERLAHANSIAEECLSTMPTVRSFAGGPAQGRLYRGKLDE-------------------YYDLNKQEARAYGAYAVATTLLPNLVTALVLFYGGQLVLNQDGLTSGQLVSFLLLLGSLSEGFSNMGSIFSSI 641
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A7S1CY43_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY43_CYCTE)

HSP 1 Score: 139 bits (351), Expect = 1.250e-38
Identity = 84/180 (46.67%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+ V V+  L+FMF  SW+LSL+AF+SVP I  +SK YG ++RKLSKL Q KLA+  SV+E ++GSM TVR+F A   E +E+   +Q+                   Y  L+ +   AY  Y  + V  PNLVTAVVLFYGG LV  G +T G +VSF++YL SLSD F  +  IFSS+
Sbjct:    6 RSLVQVIGVLIFMFLSSWQLSLIAFVSVPVITILSKWYGEFVRKLSKLMQKKLADGNSVSEAAMGSMATVRAFDAAESELKEFQKCMQE-------------------YLGLNVRSSVAYFAYCTAVVAQPNLVTAVVLFYGGLLVRNGDMTSGDLVSFLLYLQSLSDAFGSIGYIFSSL 166
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A1E7FK35_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK35_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.970e-36
Identity = 82/180 (45.56%), Postives = 113/180 (62.78%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+ V V+  L+FMF +SW+LSL+AFISVP I  +SK YGN++R L+K+ Q KLA+  SV+E ++ SM TVR+F A   E RE+ G + +                   Y  L+ K   AY  YA     LP LVTA+V+FYGG LV  G ++ G++VSF++YL SLSDGF+ +  IFSS+
Sbjct:   84 RSLVQVIGVLIFMFMVSWQLSLLAFISVPVITVLSKWYGNFVRSLTKVMQTKLAQGNSVSEAAISSMPTVRAFDAGPTEYREFKGHMDE-------------------YLALNTKSAIAYSGYATVSTSLPQLVTALVVFYGGLLVRNGDISSGELVSFLLYLQSLSDGFSSIGYIFSSL 244
[Close]
BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A7S0C0B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0B0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.010e-33
Identity = 79/183 (43.17%), Postives = 118/183 (64.48%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQG---QVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+FV  +  L+FMF++SW+LS++A IS+P+I+ +SK YG Y+R+L+KL Q KLA+  S++E ++GSM+TVR+F AE  E   Y  K  D                   Y VL+ +G +AY  Y      LP LVT +VLFYGG LV+     Q++ G++V+F++YL+SLSD FN++ +I SS+
Sbjct:   66 RSFVQAIGVLIFMFFISWQLSMLALISIPSILLLSKTYGAYMRRLTKLQQKKLADGNSLSEAAIGSMSTVRAFGAEASEMIGYE-KCMDQ------------------YLVLTVRGAFAYVGYMFFMASLPYLVTCLVLFYGGLLVVSDGDDQISSGQLVTFILYLSSLSDAFNNLGNIMSSL 229
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A7S4R242_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R242_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.640e-33
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+ V  +  L+FMF +SW+LSL+AFISVP I   SK YGNY++KL+K+   KLA+  +V+E ++GSM TVR+F AE  E  E+   +                     Y  ++ +  YAY  Y +    LP LVTAVVLFYGG LV   Q+T G++VSF++YL SLSD FN + +IFSS+
Sbjct:  351 RSVVQAIGVLIFMFIISWQLSLLAFISVPLITLFSKWYGNYMQKLTKVMNKKLADGNAVSEAAVGSMPTVRAFGAETSELDEFNKHMGQ-------------------YLSINLRSAYAYLGYCSCITSLPQLVTAVVLFYGGLLVEDRQMTSGELVSFILYLNSLSDAFNTIGNIFSSL 511
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BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A7S4QZM3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QZM3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.990e-33
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+ V  +  L+FMF +SW+LSL+AFISVP I   SK YGNY++KL+K+   KLA+  +V+E ++GSM TVR+F AE  E  E+   +                     Y  ++ +  YAY  Y +    LP LVTAVVLFYGG LV   Q+T G++VSF++YL SLSD FN + +IFSS+
Sbjct:  351 RSVVQAIGVLIFMFIISWQLSLLAFISVPLITLFSKWYGNYMQKLTKVMNKKLADGNAVSEAAVGSMPTVRAFGAETSELDEFNKHMGQ-------------------YLSINLRSAYAYLGYCSCITSLPQLVTAVVLFYGGLLVEDRQMTSGELVSFILYLNSLSDAFNTIGNIFSSL 511
[Close]
BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Match: A0A6U3T7I6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T7I6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.420e-33
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:    1 RNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLAEAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPXXXXXXXXXDLRLRTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGGKVVSFMIYLTSLSDGFNDMASIFSSM 540
            R+ V  +  L+FMF +SW+LSL+AFISVP I   SK YGNY++KL+K+   KLA+  +V+E ++GSM TVR+F AE  E  E+   +                     Y  ++ +  YAY  Y +    LP LVTAVVLFYGG LV   Q+T G++VSF++YL SLSD FN + +IFSS+
Sbjct:  494 RSVVQAIGVLIFMFIISWQLSLLAFISVPLITLFSKWYGNYMQKLTKVMNKKLADGNAVSEAAVGSMPTVRAFGAETSELDEFNKHMGQ-------------------YLSINLRSAYAYLGYCSCITSLPQLVTAVVLFYGGLLVEDRQMTSGELVSFILYLNSLSDAFNTIGNIFSSL 654
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13252.2529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W4_ECTSI1.200e-8281.67ABC transmembrane type-1 domain-containing protein... [more]
A0A835YSY9_9STRA6.850e-5358.89ABC transporter type 1, transmembrane domain-conta... [more]
A0A7S4DAM6_HETAK7.790e-4850.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TKE5_9STRA1.480e-4253.59Atp-binding cassette sub-family b member 9 n=1 Tax... [more]
A0A7S1CY43_CYCTE1.250e-3846.67Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A1E7FK35_9STRA4.970e-3645.56p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0C0B0_9STRA1.010e-3343.17Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S4R242_9STRA3.640e-3345.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QZM3_9STRA4.990e-3345.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U3T7I6_9STRA5.420e-3345.00Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13252contigL-elsbetiae_contig13252:271..3878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue1e-66
Seed eggNOG ortholog2880.D7G0W4
Preferred nameABCB9
KEGG koko:K02021,ko:K05653,ko:K05654,ko:K05656,ko:K05658
KEGG TC3.A.1.106,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.201,3.A.1.209,3.A.1.21
KEGG Pathwayko02010,ko04142,ko04145,ko04612,ko04976,ko05168,ko05206,ko05226,ko05340,map02010,map04142,map04145,map04612,map04976,map05168,map05206,map05226,map05340
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0000323,GO:0001910,GO:0001911,GO:0001912,GO:0001914,GO:0001916,GO:0002237,GO:0002376,GO:0002428,GO:0002474,GO:0002475,GO:0002476,GO:0002477,GO:0002478,GO:0002479,GO:0002481,GO:0002483,GO:0002484,GO:0002485,GO:0002488,GO:0002489,GO:0002577,GO:0002579,GO:0002583,GO:0002585,GO:0002589,GO:0002591,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0002703,GO:0002704,GO:0002705,GO:0002706,GO:0002707,GO:0002708,GO:0002709,GO:0002711,GO:0002715,GO:0002716,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0003823,GO:0003824,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005793,GO:0005815,GO:0005856,GO:0005886,GO:0006629,GO:0006810,GO:0006857,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007034,GO:0007041,GO:0008144,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0015421,GO:0015433,GO:0015440,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019882,GO:0019883,GO:0019884,GO:0019885,GO:0022607,GO:0022804,GO:0022857,GO:0023029,GO:0030139,GO:0030176,GO:0030554,GO:0030659,GO:0030666,GO:0030670,GO:0031047,GO:0031090,GO:0031224,GO:0031227,GO:0031341,GO:0031342,GO:0031343,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033116,GO:0033218,GO:0033220,GO:0035194,GO:0035264,GO:0035639,GO:0035672,GO:0035673,GO:0036094,GO:0040007,GO:0040029,GO:0042175,GO:0042221,GO:0042269,GO:0042270,GO:0042277,GO:0042287,GO:0042288,GO:0042590,GO:0042605,GO:0042623,GO:0042626,GO:0042802,GO:0042803,GO:0042824,GO:0042825,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043190,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043492,GO:0043531,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044459,GO:0044464,GO:0045088,GO:0045335,GO:0045824,GO:0045953,GO:0046907,GO:0046967,GO:0046968,GO:0046977,GO:0046978,GO:0046979,GO:0046980,GO:0046982,GO:0046983,GO:0048002,GO:0048284,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0060255,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0098852,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904680,GO:1904949,GO:1990351,GO:1990668
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Ec32 ortholog descriptionAAA ATPase domain protein
Ec32 orthologEc-23_002050.1
Exons4
Model size540
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13252.2529.1prot_L-elsbetiae_contig13252.2529.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13252 271..3866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.852666-CDS-L-elsbetiae_contig13252:270..4871622815502.852666-CDS-L-elsbetiae_contig13252:270..487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 271..487 -
1691682929.7536922-CDS-L-elsbetiae_contig13252:270..4871691682929.7536922-CDS-L-elsbetiae_contig13252:270..487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 271..487 -
1622815502.8629167-CDS-L-elsbetiae_contig13252:512..5691622815502.8629167-CDS-L-elsbetiae_contig13252:512..569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 513..569 -
1691682929.764976-CDS-L-elsbetiae_contig13252:512..5691691682929.764976-CDS-L-elsbetiae_contig13252:512..569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 513..569 -
1622815502.87392-CDS-L-elsbetiae_contig13252:1913..20291622815502.87392-CDS-L-elsbetiae_contig13252:1913..2029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 1914..2029 -
1691682929.7739258-CDS-L-elsbetiae_contig13252:1913..20291691682929.7739258-CDS-L-elsbetiae_contig13252:1913..2029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 1914..2029 -
1622815502.8846974-CDS-L-elsbetiae_contig13252:3728..38661622815502.8846974-CDS-L-elsbetiae_contig13252:3728..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 3729..3866 -
1691682929.7832465-CDS-L-elsbetiae_contig13252:3728..38661691682929.7832465-CDS-L-elsbetiae_contig13252:3728..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13252 3729..3866 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.8943295-UTR-L-elsbetiae_contig13252:3866..38781622815502.8943295-UTR-L-elsbetiae_contig13252:3866..3878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13252 3867..3878 -
1691682929.7928424-UTR-L-elsbetiae_contig13252:3866..38781691682929.7928424-UTR-L-elsbetiae_contig13252:3866..3878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13252 3867..3878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13252.2529.1

>prot_L-elsbetiae_contig13252.2529.1 ID=prot_L-elsbetiae_contig13252.2529.1|Name=mRNA_L-elsbetiae_contig13252.2529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKLYGNYIRKLSKLSQDKLA
EAGSVAEESLGSMTTVRSFAAEGRESREYAGKLQDPPPPPPPPPPPDLRL
RTPLYYVLSKKGGYAYGFYAASFVLLPNLVTAVVLFYGGQLVMQGQVTGG
KVVSFMIYLTSLSDGFNDMASIFSSM
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mRNA from alignment at L-elsbetiae_contig13252:271..3878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13252.2529.1 ID=mRNA_L-elsbetiae_contig13252.2529.1|Name=mRNA_L-elsbetiae_contig13252.2529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3608bp|location=Sequence derived from alignment at L-elsbetiae_contig13252:271..3878- (Laminarionema elsbetiae ELsaHSoW15)
AGAAATTTCGTGATGGTGGTGGTGACGCTGCTGTTCATGTTCTACCTCTC
GTGGCGGCTCTCCCTTGTGGCCTTCATCTCCGTCCCCGCGATCGTCACGG
TGTCCAAGTTGTACGGCAACTACATCAGGAAGCTCTCCAAGTTGTCGCAG
GTATACATACGCCCTCCTGTGTGACCCCGGCTGGGTCGTCTATAGCTAAA
TAGTCGTAGTGGAGGAAGGGGGGCCAGTGGGGCAGACGACGAATAAGCCA
AAAATGGGAGGAAAATAAATAAATATATCTATAAAGGAGTTTATATTCTT
CGAAGTATAGGACTAACTACAGAATGGGGTCTGGGAACTCATGTTCCGGT
TTTGAATCTGTGGGCTGTCGGCTTCCAATAGCCCAAACAAACGTCAGTAG
GACAGCAGCTGTCTGTTTCGGCACAAAAAGCTGAGGGGCACCAGACAGGC
CTGCACAGCTGTGTTGACAAGGGCGGAGCGTCGGCACAGAAGCACCCGGT
TCAGTACTGCTGTTGCTGTGTTTTTGGCGGGGAGCTGTTTCCGATCGCAG
ATTAGCAGCTGATCTACTACGATAAAACGTGACGATTAAGGACCGCAGCT
GTTTTTTGCGCGGGAAAAGAGGCGTTTGAGTTCAAAATCTTTGGGTCAGA
GATCTGGGTTCAAAACCCGAGCTCCTCTTTTTTCTTTGGTCTTGCATCAC
CCCCTCCCTGCTGCTGTGCCTCTCATGAGAGCTCGCCCCGAAGGGGGATC
TTGTACTTCTATATACAAATTATATATACTTTATTTCTATTTAAACACAT
GTGCCTCTCCTTCCTACCCATGCGTGTGCTGCTGAAATGTTCGTGGATGG
ACCTCGGAACGGGTTCCTGGTTTTGCGCTTCGTACTATCTGTGTGAAATG
CAGGAACAACAAATGGCAGTTGAGAACAGATCTGTCGTGTGTGGTTAGTT
GATATGTAGCCAGACGACGCTTACACGTCTGCTGGGGGCCTGTGAGCCGT
CGACATAATAATTTTTAAAAATGTAAGTGTACGGAAGTAGGAGAGTATTG
TAGTGTGTAGCACAAATGGACTATCTTTTGAGCACAACAGCAGTGTGACA
AAAGGCCAGAAGAAAACGCCCCCACACAGCTCTCAATGAATCTTTCCGGG
AGATATAATGGCGGAGGTCAGCCCACTCCCCGAGGCATCGCAGGTGTACC
TACGCAGTCTTTGTAGATATGTAGAGTCTTCTACAAGAATATAGTCTATA
TTGTGTGTTGGTTGACAAGGTAGATATGCATCTAGTCTAGAGTCTTCTAC
AAGAATATATATATATTGTGTGTTGGTAGACAAATTATAGCGAGATCATC
AGCGTCTTCGCGATCGATCGCGTCCATCCATAGCAGATGTTGACGGTTCT
GTGTGGCGCGGTCAAGTCACAGGCTTCATTTAACGTCGGCAACAAACAGC
ATAGATAGCAGCAAATCTCTGTCGATCAGCTACATACCCCAATCGCATCA
CTGCTGCTAGCTGTGAGCGCGACGGATGCACCATGGCAACAACCTCTTCC
TGTCGTCGTGCTCACTCAGTAAGTGCATGGCAGGGATATTCCAACTCTGA
AATATCCATTATGCGTTACATACCCCTTTAAAGCGCACGGGAATCAAACG
GCGGGACTTCGATGAGGCGGCGGTACCCACCCCCCCCCAGCGCGCGCGCC
ATATCCTGGCAATGAGAGCAGCTGCTCTCTCAGTAATCCACTGACGGCGC
CAATAACGACAACACTCTGCTGCCTCGATCACCCGTTGACGGCGTCAATA
ACAACAACAGCGCCAACGACACTTACTTTTTTTTTTTTTGTGGTGACAGG
ACAAGCTGGCGGAAGCGGGTTCGGTGGCGGAGGAGAGCCTGGGCAGCATG
ACCACGGTGAGGTCCTTCGCGGCCGAGGGGAGGGAGAGCAGGGAGTACGC
CGGCAAGCTGCAAGAGTGAGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTTGTGCTTCTGCTGCTGC
TGCTGCTGTTTTGCTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGC
TGCTGTTTTGTGATTTTTTTGTGTCTTGATGATGAAGTGTGCTGTTGTTT
GTGAGGGGGGCAGGGAGTACGCCGTCAAGCTGCTGCTGTTGTTTTGAAAA
CAAAAACAGAAAGAAAAAAAAATCAAAGACGGGCCACCCCCACGTGACAA
ACACGGGGACGCCGTTGGCTTGTGAACAATATTCGTGCATACAAACGGTA
GTTCGTTCTACTTGTTGTTGTTGTTGCTGTTGTCTTCGCATTAAAAACCG
TTCCGATCTGTCGGTGCAGTACCTCCACGAGTCCGTACTAATCCAACACT
GACGCGATCGATTCCCGTGGTCACAGGCTTACTTGGCCTAAAAAAGGTAA
ACCGAAGAAAAAGAAAAGAAATAAAAAGGTAGACCCGAAGGGTCCGCAAA
GCACAAAAACAAAAGATCAGACACAGATAGTCTGGAGCCCTCCGCTCCCC
TCTGCACGCTGTGTGAGGTCAAAAACAAACCTGGAAAAGCCGACATAACT
ACGTACTTCGAAGTACATTGTATGTACGGCAATGTATTGTTGGATAAGCC
GAGTGGAAAAACGCGAACATACATAATGGTGCAGAGTTAAAAAAAAAAAA
AGTTCAACACCTCCTCTGCTCTGCACAACCAACTCTGCCCCAGGTCAAAC
CAGCAAATTTTGTTTTATGTTTTATTCTGCTCTTGCTTCAATATCTGTCT
GCCTGTTGCCATCTGTTTTTTCGTTTTGTTGGGGATGTGAAACGAAAAAG
AAGCGTCCGGATTTTTCTGAAAACGCTTTAATATATATCCCGTGCTCCCG
AAAGTTGGTGATTGTCCCTGTTCCTCTCCGCACCACGCTTGGCTGGTATG
TATAGGATTTTCCTGCAACAGGGCCCCCCGTTCTCAAAAAGCGGCTGAAA
AAGCGGCTGTGGGGGACTACTGACTACATTTCCTAGATAAATACCCTCCC
GCGCTGCCCCCCCCCCCTCCCGCTCTTTTTCGAGAACTGGGGGCTCTATT
GCAGGAAACCTAAATACATAGTCACGTTTCGAACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCGGGGGGGGGCGCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCTTTTTCAGGACAGGGGGGGGCTTTTGAGGAAAACCAA
AAAACACAGTCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCTGACCTCC
GCCTCCGCACGCCGCTGTCGCCGCTGTCGCCGCCGCCGCAGCTACTACGT
GCTGTCCAAGAAGGGGGGCTACGCCTACGGGTTCTACGCGGCCAGCTTCG
TGCTGCTCCCGAACCTGGTGACGGCCGTAGTGCTCTTCTACGGCGGCCAG
CTCGTGATGCAGGGGCAGGTGACGGGCGGAAAGGTCGTGAGCTTCATGAT
CTACCTGACGTCTCTGTCGGACGGCTTCAACGACATGGCCTCCATCTTTT
CCTCGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13252:271..3878-

>mRNA_L-elsbetiae_contig13252.2529.1 ID=mRNA_L-elsbetiae_contig13252.2529.1|Name=mRNA_L-elsbetiae_contig13252.2529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig13252:271..3878- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTGGTGACGCTGCTGTTCATGTTCTACCTCTCGTGGCGGCTCTC
CCTTGTGGCCTTCATCTCCGTCCCCGCGATCGTCACGGTGTCCAAGTTGT
ACGGCAACTACATCAGGAAGCTCTCCAAGTTGTCGCAGATGGTGGTGGTG
ACGCTGCTGTTCATGTTCTACCTCTCGTGGCGGCTCTCCCTTGTGGCCTT
CATCTCCGTCCCCGCGATCGTCACGGTGTCCAAGTTGTACGGCAACTACA
TCAGGAAGCTCTCCAAGTTGTCGCAGGACAAGCTGGCGGAAGCGGGTTCG
GTGGCGGAGGAGAGCCTGGGCAGCATGACCACGGTGAGGTCCTTCGCGGC
CGAGGGGAGGGAGAGCAGGGAGTACGCCGGCAAGCTGCAAGAGACAAGCT
GGCGGAAGCGGGTTCGGTGGCGGAGGAGAGCCTGGGCAGCATGACCACGG
TGAGGTCCTTCGCGGCCGAGGGGAGGGAGAGCAGGGAGTACGCCGGCAAG
CTGCAAGATCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCTGACCTCCG
CCTCCGCACGCCGCTTCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCTG
ACCTCCGCCTCCGCACGCCGCTCTACTACGTGCTGTCCAAGAAGGGGGGC
TACGCCTACGGGTTCTACGCGGCCAGCTTCGTGCTGCTCCCGAACCTGGT
GACGGCCGTAGTGCTCTTCTACGGCGGCCAGCTCGTGATGCAGGGGCAGG
TGACGGGCGGAAAGGTCGTGAGCTTCATGATCTACCTGACGTCTCTGTCG
GACGGCTTCAACGACATGGCCTCCATCTTTTCCTCGATGCTACTACGTGC
TGTCCAAGAAGGGGGGCTACGCCTACGGGTTCTACGCGGCCAGCTTCGTG
CTGCTCCCGAACCTGGTGACGGCCGTAGTGCTCTTCTACGGCGGCCAGCT
CGTGATGCAGGGGCAGGTGACGGGCGGAAAGGTCGTGAGCTTCATGATCT
ACCTGACGTCTCTGTCGGACGGCTTCAACGACATGGCCTCCATCTTTTCC
TCGATG
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