mRNA_L-elsbetiae_contig13236.2518.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13236.2518.1
Unique NamemRNA_L-elsbetiae_contig13236.2518.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13236.2518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13236contigL-elsbetiae_contig13236:1059..1804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size746
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13236.2518.1prot_L-elsbetiae_contig13236.2518.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13236 1221..1643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.940937-UTR-L-elsbetiae_contig13236:1058..12201622815501.940937-UTR-L-elsbetiae_contig13236:1058..1220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13236 1059..1220 +
1691682929.245495-UTR-L-elsbetiae_contig13236:1058..12201691682929.245495-UTR-L-elsbetiae_contig13236:1058..1220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13236 1059..1220 +
1622815501.9752266-UTR-L-elsbetiae_contig13236:1643..18041622815501.9752266-UTR-L-elsbetiae_contig13236:1643..1804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13236 1644..1804 +
1691682929.271789-UTR-L-elsbetiae_contig13236:1643..18041691682929.271789-UTR-L-elsbetiae_contig13236:1643..1804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13236 1644..1804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.9535317-CDS-L-elsbetiae_contig13236:1220..16431622815501.9535317-CDS-L-elsbetiae_contig13236:1220..1643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13236 1221..1643 +
1691682929.2543645-CDS-L-elsbetiae_contig13236:1220..16431691682929.2543645-CDS-L-elsbetiae_contig13236:1220..1643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13236 1221..1643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13236.2518.1

>prot_L-elsbetiae_contig13236.2518.1 ID=prot_L-elsbetiae_contig13236.2518.1|Name=mRNA_L-elsbetiae_contig13236.2518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MPADSSAVFCGQEALAKSLAKSTTGVGLEWLYPGTLCSGGSRAAFILSFF
GFLFFRCLGSARRYCTPKPLPTPPHTHSLSAPFSLLANGIWCVKKRRRST
SLSRSGEEAYHDEGQGTRSSPWVCSSDDSPERARAPIHAF*
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mRNA from alignment at L-elsbetiae_contig13236:1059..1804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13236.2518.1 ID=mRNA_L-elsbetiae_contig13236.2518.1|Name=mRNA_L-elsbetiae_contig13236.2518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=746bp|location=Sequence derived from alignment at L-elsbetiae_contig13236:1059..1804+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCTATTTATCTATGTATGTAGGTTATGTGGGTTTTGGGTCTTGAGGTG
GAGGTTTCTGAGGGTGTGAACGTGCCCTCCTCCTCTTGAGCGTGCTGTCC
TCCTCTTTTGTGGTCGTTTAAAAGCTTGTACGAATGTCGAGGCTTTAGGC
TGGCTTGATTGAATGCCGGCCGATTCATCAGCAGTCTTTTGTGGGCAGGA
GGCTCTCGCGAAGAGTCTTGCGAAGAGTACGACGGGTGTGGGTCTGGAAT
GGTTGTACCCCGGTACACTGTGTAGTGGAGGCTCGAGGGCGGCATTTATC
CTTTCATTTTTTGGTTTTTTATTTTTTCGGTGTTTAGGGAGTGCACGCCG
CTACTGTACCCCGAAACCCCTACCTACCCCCCCACACACACACTCTCTCT
CTGCTCCTTTTTCTCTCCTCGCGAACGGCATTTGGTGCGTAAAAAAGCGC
CGGCGATCGACATCGCTGAGCCGGAGCGGGGAGGAAGCCTATCATGATGA
GGGGCAGGGCACCCGTAGTTCGCCTTGGGTATGTAGCAGCGATGATTCCC
CCGAGAGGGCCCGCGCGCCCATCCACGCTTTTTGATTCGCGTCGAGACCT
GTTGCCCGGAATACATGTATGTTGTTGTTGTTGTTGTTTCTCACATTAGC
TCTCTAGTCCAAAACATCCTTGGGGGCCCGTGGTCACAAAACAAGGCACA
CTCACGCCACGAAGGAAAAATACACAAAATATGGTACATACGCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13236:1059..1804+

>mRNA_L-elsbetiae_contig13236.2518.1 ID=mRNA_L-elsbetiae_contig13236.2518.1|Name=mRNA_L-elsbetiae_contig13236.2518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig13236:1059..1804+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCCGATTCATCAGCAGTCTTTTGTGGGCAGGAGGCTCTCGCGAA
GAGTCTTGCGAAGAGTACGACGGGTGTGGGTCTGGAATGGTTGTACCCCG
GTACACTGTGTAGTGGAGGCTCGAGGGCGGCATTTATCCTTTCATTTTTT
GGTTTTTTATTTTTTCGGTGTTTAGGGAGTGCACGCCGCTACTGTACCCC
GAAACCCCTACCTACCCCCCCACACACACACTCTCTCTCTGCTCCTTTTT
CTCTCCTCGCGAACGGCATTTGGTGCGTAAAAAAGCGCCGGCGATCGACA
TCGCTGAGCCGGAGCGGGGAGGAAGCCTATCATGATGAGGGGCAGGGCAC
CCGTAGTTCGCCTTGGGTATGTAGCAGCGATGATTCCCCCGAGAGGGCCC
GCGCGCCCATCCACGCTTTTTGAATGCCGGCCGATTCATCAGCAGTCTTT
TGTGGGCAGGAGGCTCTCGCGAAGAGTCTTGCGAAGAGTACGACGGGTGT
GGGTCTGGAATGGTTGTACCCCGGTACACTGTGTAGTGGAGGCTCGAGGG
CGGCATTTATCCTTTCATTTTTTGGTTTTTTATTTTTTCGGTGTTTAGGG
AGTGCACGCCGCTACTGTACCCCGAAACCCCTACCTACCCCCCCACACAC
ACACTCTCTCTCTGCTCCTTTTTCTCTCCTCGCGAACGGCATTTGGTGCG
TAAAAAAGCGCCGGCGATCGACATCGCTGAGCCGGAGCGGGGAGGAAGCC
TATCATGATGAGGGGCAGGGCACCCGTAGTTCGCCTTGGGTATGTAGCAG
CGATGATTCCCCCGAGAGGGCCCGCGCGCCCATCCACGCTTTTTGA
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