mRNA_L-elsbetiae_contig1323.2516.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1323.2516.1
Unique NamemRNA_L-elsbetiae_contig1323.2516.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1323.2516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1323contigL-elsbetiae_contig1323:26010..26523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.4346232-CDS-L-elsbetiae_contig1323:26009..263931622815501.4346232-CDS-L-elsbetiae_contig1323:26009..26393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1323 26010..26393 +
1691682928.8961556-CDS-L-elsbetiae_contig1323:26009..263931691682928.8961556-CDS-L-elsbetiae_contig1323:26009..26393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1323 26010..26393 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.4491093-UTR-L-elsbetiae_contig1323:26393..265231622815501.4491093-UTR-L-elsbetiae_contig1323:26393..26523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1323 26394..26523 +
1691682928.9064062-UTR-L-elsbetiae_contig1323:26393..265231691682928.9064062-UTR-L-elsbetiae_contig1323:26393..26523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1323 26394..26523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1323.2516.1prot_L-elsbetiae_contig1323.2516.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1323 26010..26393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1323.2516.1

>prot_L-elsbetiae_contig1323.2516.1 ID=prot_L-elsbetiae_contig1323.2516.1|Name=mRNA_L-elsbetiae_contig1323.2516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
AGSGSATAFCCCPAPPAVIVWWPAQTVRRCSVERTKHTRAPADAQSSDFQ
RVRRVYRVSAAVSRRKGTKPKAEPWGSTDIPHEAHGHPPVPPAFAVCRPA
RALRTHRSTCSGRLYFTFFVVAGGITK*
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mRNA from alignment at L-elsbetiae_contig1323:26010..26523+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1323.2516.1 ID=mRNA_L-elsbetiae_contig1323.2516.1|Name=mRNA_L-elsbetiae_contig1323.2516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=514bp|location=Sequence derived from alignment at L-elsbetiae_contig1323:26010..26523+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGATCTGGCTCGGCGACAGCCTTCTGCTGTTGTCCTGCTCCTCCGGC
GGTCATCGTCTGGTGGCCTGCCCAGACTGTGCGTCGATGCTCGGTAGAGC
GGACGAAACACACACGCGCGCCGGCCGACGCCCAATCTTCCGACTTCCAA
CGTGTGCGGCGTGTATATCGTGTATCGGCAGCAGTTTCTCGCCGGAAAGG
AACCAAACCAAAAGCGGAACCATGGGGGTCTACAGATATACCACATGAGG
CCCATGGCCACCCACCCGTACCCCCGGCATTTGCTGTTTGTCGGCCTGCT
CGGGCTCTGAGGACACACAGGTCTACCTGCTCTGGGAGGCTGTACTTCAC
CTTCTTTGTCGTTGCTGGTGGTATCACAAAGTAGACGGGTGGCTGTTGAC
AGCTCGATTTTTCGAAAATCTGATCTTCAACTGAAACAGCATGGGAGCAA
GCGCCCAACCTAACGACCGGCCGGAGCACGGGAGGCAGATCTACCGTGGG
AGCTGTGGAGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1323:26010..26523+

>mRNA_L-elsbetiae_contig1323.2516.1 ID=mRNA_L-elsbetiae_contig1323.2516.1|Name=mRNA_L-elsbetiae_contig1323.2516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig1323:26010..26523+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGATCTGGCTCGGCGACAGCCTTCTGCTGTTGTCCTGCTCCTCCGGC
GGTCATCGTCTGGTGGCCTGCCCAGACTGTGCGTCGATGCTCGGTAGAGC
GGACGAAACACACACGCGCGCCGGCCGACGCCCAATCTTCCGACTTCCAA
CGTGTGCGGCGTGTATATCGTGTATCGGCAGCAGTTTCTCGCCGGAAAGG
AACCAAACCAAAAGCGGAACCATGGGGGTCTACAGATATACCACATGAGG
CCCATGGCCACCCACCCGTACCCCCGGCATTTGCTGTTTGTCGGCCTGCT
CGGGCTCTGAGGACACACAGGTCTACCTGCTCTGGGAGGCTGTACTTCAC
CTTCTTTGTCGTTGCTGGTGGTATCACAAAGTAGGCTGGATCTGGCTCGG
CGACAGCCTTCTGCTGTTGTCCTGCTCCTCCGGCGGTCATCGTCTGGTGG
CCTGCCCAGACTGTGCGTCGATGCTCGGTAGAGCGGACGAAACACACACG
CGCGCCGGCCGACGCCCAATCTTCCGACTTCCAACGTGTGCGGCGTGTAT
ATCGTGTATCGGCAGCAGTTTCTCGCCGGAAAGGAACCAAACCAAAAGCG
GAACCATGGGGGTCTACAGATATACCACATGAGGCCCATGGCCACCCACC
CGTACCCCCGGCATTTGCTGTTTGTCGGCCTGCTCGGGCTCTGAGGACAC
ACAGGTCTACCTGCTCTGGGAGGCTGTACTTCACCTTCTTTGTCGTTGCT
GGTGGTATCACAAAGTAG
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