mRNA_L-elsbetiae_contig1323.2515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1323.2515.1
Unique NamemRNA_L-elsbetiae_contig1323.2515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1323.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1323contigL-elsbetiae_contig1323:19197..26522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1323.2515.1prot_L-elsbetiae_contig1323.2515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1323 19333..26522 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.3691297-UTR-L-elsbetiae_contig1323:19196..193321622815501.3691297-UTR-L-elsbetiae_contig1323:19196..19332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1323 19197..19332 +
1691682928.8650353-UTR-L-elsbetiae_contig1323:19196..193321691682928.8650353-UTR-L-elsbetiae_contig1323:19196..19332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1323 19197..19332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.3828468-CDS-L-elsbetiae_contig1323:19332..194891622815501.3828468-CDS-L-elsbetiae_contig1323:19332..19489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1323 19333..19489 +
1691682928.8759596-CDS-L-elsbetiae_contig1323:19332..194891691682928.8759596-CDS-L-elsbetiae_contig1323:19332..19489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1323 19333..19489 +
1622815501.395138-CDS-L-elsbetiae_contig1323:26448..265221622815501.395138-CDS-L-elsbetiae_contig1323:26448..26522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1323 26449..26522 +
1691682928.8875754-CDS-L-elsbetiae_contig1323:26448..265221691682928.8875754-CDS-L-elsbetiae_contig1323:26448..26522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1323 26449..26522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1323.2515.1

>prot_L-elsbetiae_contig1323.2515.1 ID=prot_L-elsbetiae_contig1323.2515.1|Name=mRNA_L-elsbetiae_contig1323.2515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MLQLTAVNARTLFLLLRLFPALEEFLATRGHLARALDRGRTEELLSLSPP
PHAWEQAPNLTTGRSTGGRSTVGAVEQ
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mRNA from alignment at L-elsbetiae_contig1323:19197..26522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1323.2515.1 ID=mRNA_L-elsbetiae_contig1323.2515.1|Name=mRNA_L-elsbetiae_contig1323.2515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7326bp|location=Sequence derived from alignment at L-elsbetiae_contig1323:19197..26522+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTGGTACGCCAAGGCTGCGGCGGGGATGCCCTTTACGACCGCCTCCG
CTTCAAACCTAACGAGGATGGACGGTGATTTTACCAGCAGTTGTCTACGC
TTAGGTTTAGTTTCCGAGATGTGATTGGGCGGATATATGTTGCAGCTGAC
TGCCGTCAACGCTCGAACGCTCTTTTTATTGTTACGTTTATTTCCAGCGC
TCGAAGAGTTCCTTGCCACGAGGGGACATCTTGCCAGAGCTCTGGACCGT
GGTCGCACAGAAGAGCTCCTCTCCCTCAGCCCCCCACCCCACGGTGCGTG
CCTTCAATTTTTGACGCAAGAAGAGTTTTAGCCGTCTCTTCCCTCACTGA
GAGCATGAAAAAATGAAGCTGTGTGTAGAGAGCGAACCTACCCCATCGTT
TTATGTTTGTCGGGGCCACGTGGTGTCTGCCTGCTGTAGGCCACTACTTA
GTGTGAACTGCGATCGATTCGAATTTCCGGTATAGTCCGGGCACGTGCAA
TAGCCGTTTCCGAGCAGGTTTTGGGATTGAAACGAAACACGCTGCAAAAC
AGGTGATGGAAAGGGAGAGAGAGGCTGGCCTCGAAACGTAGACACGGTGT
TCGCACGCCCCATGGGTTAAGGCCGGGAGTGCGAAACGCCAGCTGCAACC
AACTCTGCTTCTCTCGTCGGCGGCGCTCACCGGGATTCTCCAAGGCCGGC
CGGGGAAAACGCCACCTCGAAGACAAACTCCCCGTGCGCCGGCACCACGG
CAAACTCGGGAAATATTCCGAACGGTCCCCCATCGGGTGCTCCTCTTGCC
GTCATCGCCGCCGCCGCCGCATCTGCCGGTAGAGCCGCAGTGGCACCGAC
AACCGAGGGGAAGCCAGGAGAAGCCGTAGACGTGGCGAGGCTACGAGCAG
GAGAGCCGAGGTCCATGCAGTTCTTGTCGTGTCTGGCATCAATGCTTCGG
AACTTTGGTGTTGCCGCTGTTGTACCTGGTTCTTGGTGGGCCCCGTGCTT
TCCCTCCGTTCCCGCGGCATGATCACAGCTAGAACCACCACTGGCGGCAG
CGGCGGAACCACCTGTGGGGATGGTCACACCAGCCGTGAACTGGCTCTTT
GGTCGGTTCGTCCCTATCATCCCAGCACCAGCGCTGATGGCAGTAGTAGG
AGATATACCAGTCGGAAACATGGGAGAAAAAGCAGCTTGAGGTGAAGCAA
AACCTGCCCTAGAGTCCTTCGTCCGCTGCTGCTGCCGCCGCCGCCGCTGC
TGCTGCTGCTGTTCCTGGAGAGGAGAGATCTCCGAAATCTCCCATCGGAC
CGGAAGATCTCCGGTGGTGCCGTTCTGTAGGGTGAACCGCCGCCGCGCGG
TGCTGGCAAGAAGCGTGGGCTCGAACAAGAGGTGGCTGATGATCGCCGGT
AGCGGTGTCCCTTGGTCCGTTCCGCCGGTGTCGCCGAATGGCAAACGCTG
CTGCTGCTGCTGCGGATCCTGCTGCGGATCCTGCTGCTGCGATTCCTGCT
CCAAGCGGCACACGGCACTGCTTTTTAGCTTTGTGCGGGCGGTATTGGCT
CGCGGGACCTCTACGTCAATCGGTGTGTGAGTCACGGTTCTGTGCCCCCT
CCTCTACCGCCGTAAACGGCGCCTCAACAGATTTCCATCTTCTCGGAGAC
AGGCTTGGCCGAGGTAATCGCTTCGGTGCTTGCTTGCATCGTGGGGTGTA
TTTCATTGCACTGCTTCGTGAGCACAAGCATTGTTTTTCGCTGACGAGAC
AACAGAACTCGCCGTGCGACTGCGTTTGACGTTAGGATGGCCGCGGAATA
GAAAGACCGAACAAAATTCCGTATAAAACAGCCCCCCCTTCCCCAAGTCT
CGGGTTGCAAGCCTCACCCCGCGGTCGTCTTGGAGAAGCGACGCCGTTGG
CGGCACCCGAGCCGGAACGGGGGTCCCGTCGACGCTTGAGATGCGGAGCG
ATACCTGCTCGCAGAGCGCCGAGACGCGCAGCTCCCTCTCCTCGCAGTTG
TCCTGCCGGGGACCGGGGAAGGAAGCGAAGCACACGTAAAGTTGACATCG
TGGAGTTGTGAGACGCCATCTGCGAGAAGGCGATGGCCCAACTATCGAGA
CTTTGATACATGCTTCTATATATCAAGAGCGAAGGCAAGCAAAGAGGCGC
AGAAGCACAGCAACGCATGATGAATCAGCAGCAGCAACAACCACCACCAC
CACAGCAACGCATGCGGTACTAAACGGGGGTACTGACCGAGCGCCATCGG
AGCGCCCGCTCTTTGATTCGCCCGCAGAGGTGTTCACTCACTGCTCCATG
CATGTCAAAGGCGGTTGGAGGTTAACATTTGTTTCTGGCGGAAGCTACAT
AGCTACTCCTTTGCCTGTCCTCCGTATCCGTTTGCATGATCGGCCGGGGG
GAGACAGGGTATTTGTCCCGTGGTTGCAGGACAGCTCAGCTAGGTGAAAG
GCGACAGTTCGGTTTGTGCCGCACCTGCACCATGACGAATCGAGCCTCGT
GCGGGCCGACCTCGGACGGAAGGTACTCCACGTTAACGAAGGCCGTCTCC
CCCTCCCCGATGGAATAGTCCTTGGGGAACACGCAACATGGCCCGTCCTG
CAAGCCAAGAAGACGGGGGGGGGGGAAGGCGCAAACAACCCCAGACAGGT
TGACGACAGAAAAGAGCTGGCTACAAGAAGCAGTAGCCTGCTGTTGTTCC
TGTGCAGTCTGGTGTGTCGAACCACAAGGGCAAAATTAAAAGGCGCAGAA
GGGCGAAATTCGATACTGATCTGGCTGGCGGCCTACGAGTAGTCAGACCG
TGCGGGAAAGAGGGCACATAAGAAAGGGGCGCATTTCGATAGTTTCAGCG
TGCACAGTTTTGTTAGGTGGTTGGAGGAAACGATCCGGTTCTTCTTTCGA
CCACACCATTTGATAGCAACAACGTTTTCGGCGTTCCGCCTGGGCAACAT
CTTCCAAGGGAACACCTTTGCAGACGGTTCGCATTTCGGAGGAGACACAC
ACCAAAACATACGACCCTCGGAGTGAAAACAAGGCATGTGAACAAACAAC
GTACAGTCTATTCTTTATTCAGACGACCAGGGGAAAATCCGTCGGGAGGC
GTGGAATATTACACCCACCTCGAGCCTCTCTTTGTTACCCTCGGGATCGA
AATCCGAGCCGTCGAAGTCAACCACACGGACGCTCGTGTCCAAGCCCCCT
ACACTGTGTCCTTGTCGCCCCGCTGCTTCCATGTTTTCATCCGTGTCAAT
CCGCAAGCTGCCTTCCTCCGTGCCCAACTCGTCGTGTCCCGTTTCTGTGG
TGAAGCTGCATCCGCCGCTAGCGCGTCCGTGCATGCCCCCACCGTGATTA
TCCTCCCGCGGGTGTACCGTATCGGCAGGAGACGTCGCCGCCGCTACGAG
GAAAAGGCGGAAGCGCACGAGCCCTCCCGTGTTCTTGACGCGGAACCGAA
GCGTCTTGCTCTCTCCCAGCAAGCACCCACCACAGTCCAGGAGACCGGAC
GATGGCAGAGACAGGCATGGCCGTCTCCGATGCGCGAAAATAGGCACCTC
GAACGTTCCAACCTCCGTGACGACGGAGATGATGTCGTGGTACTCCCCCA
GGCTGTCCGGGGTGAAGTCCACCAGCACTCTGGCTCCGACTCCCGGGGCG
ATATCTCCGCTCCCAGTCACCACGCCAGAATCCGGATCAACCTCCGAAGA
GGGGTAAATAACCTTCGCCAAGCTGAAGTGCTCGGTTGCAGGCGGCAGGA
GCATGAAGCTCCGCTTGAGGCACGATATATTCCGCAGCACCAGCTCCGCC
CTGAATGTCCGACCCACCCAGTAGTCGAAGTACTCCACCACCGCAGGTGT
GGCCAAGAAGTACCCGTGCTCCCCCTCCACGGCGCCCTGCGGCGGCCATG
AGGCCAGGAGGTCGGTCTTGGTCAGGGTCTTTGTTCTTACCGTCGTCTTC
GTGGCTGAGGGGCCATGAGCAGCCTCTTGGCGGCTGTTGCCGGTTGTGGT
TGTAGCCGGCTTTTCCGTGAGCATTTGCTCGTGCCAGCGGCTCTCCGGGT
CGCAGCGCGGGTTCCTGCGGAAGCAGAGCTTTCTCTGCATGCGGGTCATC
ACGGCGGCGTCGGCGTCCCTCTGAGCCGCCTTCGGGATGGCCTTCCTGCG
TGCTTGCCCCGGCTTCGTGGTGCCACCCTTCACGCTGTCGTCGTCCGTCG
TGTCGTCCTCCGTAACACCTTGGTCTCTCCAAACGGCGGCGACCGTCCCC
GTGCCCTCGTCGGCGGCGGGAGGGGTGACGGTGTCGCAGGTTCGCCTTTC
CTCTAGCGTGCGCTTGGTCTTTTGGTAAAACTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTACACCCTTATCTCCG
CGGCGGCCGAAACTCTTTTTTAGGGCAAGAGCTTCCCTGGTGCTGTTCGT
GGCGGTGTACTTGAGATACCCCGGGGGCTCGAACCTGGCGTCTCCGCCGT
TTCTGTGCCGTTCCTTCCTAGCGGACTGGTTCCAGGGAAGGTTTCCGGAG
TGCCGGAGACTGGCCTCTCGATTCGCCCGAGCAAGTTCCGCCGCATCCAG
TAGCGAAATGGCAAACCCTTCGAAGGCGTCGATTGCGGAACGGTCCAAGA
CCAATCCGCTCGGACCCATCGGAACGTGCGCGCCGACGATAATGCCTTGT
TTCTTCAGGGCCTCGAAGACCTCCCTGTCGTGTTCCCGCGCCTGCAACCG
CTGCCCGAGGGTGTAGCTCCTCAGGCCCTTGGCGAGGGCTTGGCGATCAC
CCAAGGCGGCGTCGATAGACGAAAATTTCTCGTCTAGCGCGGCGATATCC
TTGGACGTTTCGCCCTTCTCAAAAATCGAGGCCTCCTGCCCCGCCCCTGG
CTCGCCGTTGTCGAACTCGGCAGGCATCTTCTCCGCGCCGCTGGTGTGCT
CAACCCCTCCCATGTCCGTGCCATCCGGAGCTCCGTTTCCTTCCGTCTCC
TCACGCGGCTCCACATCGCCCACGCCATCCTCGCCCAGCCCCCCAGTGGC
TTCCCCGTCCGCGCCTTTCGACCTTCCCTTGATCTCTCCTCCCGTTCTGT
TGCCGGCTGCTGCAGCGGTTGATAGAGACGATGACGATGACCCATGCTTG
CCGGCGGGGTCTGTTGCTTCTCCATTGTCAGGACTTGAAGGATCATCTGC
TGACGAAAGCATTATTGGATTTGCTTGAAATGGCGAACACAATGACAAAG
AACAAACGTGGACGAAATGCTAGGTTCTGGGATGTGGTTGACAAGGCTGA
GTTGCTGTTGCGCAAAAATTTCCTCTTTTTCAAATAGCAATATATTCACC
CTACGATATCATTTTTTTTGTCTGACAGTTTGAGGACTTTGGACCGTACC
GCCTTAGAAGCAAGCACAAACGGTTTATATTCCTTGGTGGGGTCATCCAG
TAACATTGGTTTCCACCGGGGGCATTTTTAATGATATGGTAGTGTCGGTC
GGGGGCTTCATGTAAATAAGTACATAAATCGGGTTTAGTCTACCCTGTGG
CAAAGCTCTTCGTTTTTCCGAGGCCAGAGTCGAACACATCGCAAGATCTT
TCCTGCGGGAGTTCTTGAAGCTGGTTTTCATGGTATACAACAAGCCGACA
TAGATCACCAGATCCTCCCATCGCCACACCTGCAGTAGCTTTATCCCGTC
CAGTTTGGTTTGGCTTTCACCGTATCCGGCATTACTTGAAGCACAAAGAA
TCATTGTGGTGGAAACGGGAAATGCTCTGAATGCTCTAGGCTGCAGCATT
CCAAAGACTATCACTGCTAACCACGGAACATGTAGCATGGCCGAGCTGCC
TAGATCAAAGTGGCCCTACTTCGGTGCGAGCCCTCACGAGCAGCTCTGGA
TTGTTCTCCGCTTGGCCGAGCCTGCGTCCTTCTTACTATCATAGCCTACC
GTGGCGGCCTTGTTTGGCCTCTATTGGGACACCATTGTGCTCGCAAACTG
CAGCTACAAACGTAACTCCGGGTACAACTTTTTTTTCGGGCATTTCATTG
ATGAAAATAACAAACTTACATCTTTGAAAAACCATTCAGGGTGAGACCAA
GGGACTTGACTTCATATGTATGTAGATCTAATAGCCATGAAAAGTGTTGT
AGGTTCGCGGGTGCTGAGCTTACCTACATAACAATAGCAACTTTCACGAG
CAGTTTTTCCAAACCTAACAAAGAATGGCCTACCCCCTGTCACCCTCACT
CCCTCACTGCCTCGCAGAAAATCGCTCTCAAGTGGAATTTTTTGGCATAA
CTTATCTGCATACATAGTGTATGAACACATCAGCAACCAGATACGAAAGA
ATCCAAACAGCAGTCACGTCCCGACCCACTGCCGTTGCTTCCCTCACCTT
CAGCGCTTGTAGTCCCGACCGTTGAAGAGGAAGACCTCCGACCTGCCTCT
GAACCCGCAGCACCCGCAGACTCGCCTTGTCGCTTTCCCGCCACCTCCGC
CACGGAAGCCTGTTCTTGCTCCTCCTCCTTCCCATCAGCACCCCCACCAT
AAAGCTCCTTGAAAGCAGTCTTTAGGATGTGGTGGATAGATCCAACCGCA
GCCTCGTCCTCTAGCTCACCGGCCGCACCCCCCTCACCCTCTTCACCTCC
GCTGCGAACACCAGCGACGCCACCACCACGGCTACCCCCACCGCGGCTAC
CCCCACCACGGCTACCTCCACCGCGGGAACTGACATCGTCCTGTACGGCG
TTTGCGTCCTGATCTTGCCGCTCGAAGGTTTCCGCCAAGGTTTTCGCTGA
GCCGTCGACATCTGCTGGATCTGGCTCGGCGACAGCCTTCTGCTGTTGTC
CTGCTCCTCCGGCGGTCATCGTCTGGTGGCCTGCCCAGACTGTGCGTCGA
TGCTCGGTAGAGCGGACGAAACACACACGCGCGCCGGCCGACGCCCAATC
TTCCGACTTCCAACGTGTGCGGCGTGTATATCGTGTATCGGCAGCAGTTT
CTCGCCGGAAAGGAACCAAACCAAAAGCGGAACCATGGGGGTCTACAGAT
ATACCACATGAGGCCCATGGCCACCCACCCGTACCCCCGGCATTTGCTGT
TTGTCGGCCTGCTCGGGCTCTGAGGACACACAGGTCTACCTGCTCTGGGA
GGCTGTACTTCACCTTCTTTGTCGTTGCTGGTGGTATCACAAAGTAGACG
GGTGGCTGTTGACAGCTCGATTTTTCGAAAATCTGATCTTCAACTGAAAC
AGCATGGGAGCAAGCGCCCAACCTAACGACCGGCCGGAGCACGGGAGGCA
GATCTACCGTGGGAGCTGTGGAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1323:19197..26522+

>mRNA_L-elsbetiae_contig1323.2515.1 ID=mRNA_L-elsbetiae_contig1323.2515.1|Name=mRNA_L-elsbetiae_contig1323.2515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig1323:19197..26522+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCAGCTGACTGCCGTCAACGCTCGAACGCTCTTTTTATTGTTACG
TTTATTTCCAGCGCTCGAAGAGTTCCTTGCCACGAGGGGACATCTTGCCA
GAGCTCTGGACCGTGGTCGCACAGAAGAGCTCCTCTCCCTCAGCCCCCCA
CCCCACGATGTTGCAGCTGACTGCCGTCAACGCTCGAACGCTCTTTTTAT
TGTTACGTTTATTTCCAGCGCTCGAAGAGTTCCTTGCCACGAGGGGACAT
CTTGCCAGAGCTCTGGACCGTGGTCGCACAGAAGAGCTCCTCTCCCTCAG
CCCCCCACCCCACGCATGGGAGCAAGCGCCCAACCTAACGACCGGCCGGA
GCACGGGAGGCAGATCTACCGTGGGAGCTGTGGAGCAGCATGGGAGCAAG
CGCCCAACCTAACGACCGGCCGGAGCACGGGAGGCAGATCTACCGTGGGA
GCTGTGGAGCAG
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