mRNA_L-elsbetiae_contig13211.2508.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13211.2508.1
Unique NamemRNA_L-elsbetiae_contig13211.2508.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13211.2508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13211contigL-elsbetiae_contig13211:1861..2349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size490
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.6776466-CDS-L-elsbetiae_contig13211:1860..23191622815500.6776466-CDS-L-elsbetiae_contig13211:1860..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13211 1861..2319 +
1691682928.4652112-CDS-L-elsbetiae_contig13211:1860..23191691682928.4652112-CDS-L-elsbetiae_contig13211:1860..2319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13211 1861..2319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.6934392-UTR-L-elsbetiae_contig13211:2319..23491622815500.6934392-UTR-L-elsbetiae_contig13211:2319..2349Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13211 2320..2349 +
1691682928.4765406-UTR-L-elsbetiae_contig13211:2319..23491691682928.4765406-UTR-L-elsbetiae_contig13211:2319..2349Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13211 2320..2349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13211.2508.1prot_L-elsbetiae_contig13211.2508.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13211 1861..2319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13211.2508.1

>prot_L-elsbetiae_contig13211.2508.1 ID=prot_L-elsbetiae_contig13211.2508.1|Name=mRNA_L-elsbetiae_contig13211.2508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
SITGKLAARPGPRSRALASKILHGTIVPALLSSTLLSAPCLVVFLYVAWT
PLLHPHKHRLISRSKDTTGLPVFAVLLWPWKSCPCEQHPPRHDCASAVFQ
PCLSGPWSSSCSLDTHLSCTLTNTDRQRGEPLVRRIRLACRCSLCCCVPA
MG*
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mRNA from alignment at L-elsbetiae_contig13211:1861..2349+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13211.2508.1 ID=mRNA_L-elsbetiae_contig13211.2508.1|Name=mRNA_L-elsbetiae_contig13211.2508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=489bp|location=Sequence derived from alignment at L-elsbetiae_contig13211:1861..2349+ (Laminarionema elsbetiae ELsaHSoW15)
TCGATCACAGGAAAGCTGGCAGCCCGGCCTGGCCCTAGAAGTCGTGCCCT
TGCGAGCAAAATCCTTCACGGCACGATTGTGCCAGCGCTACTATCTTCAA
CTCTGCTGTCCGCCCCCTGCCTGGTCGTGTTCTTGTATGTAGCCTGGACA
CCTCTCCTGCACCCTCACAAACACCGGTTGATCTCTCGTTCGAAGGATAC
GACTGGCTTGCCGGTGTTCGCAGTCTTATTGTGGCCCTGGAAGTCGTGCC
CTTGCGAACAACACCCTCCACGGCACGATTGTGCGAGCGCTGTCTTCCAA
CCCTGCCTGTCCGGCCCCTGGTCCAGTTCTTGTAGCCTGGACACGCACCT
CTCCTGCACCCTCACGAACACTGATCGACAACGCGGAGAACCTCTCGTTC
GAAGGATACGACTGGCTTGCCGGTGTTCGCTATGTTGTTGTGTTCCAGCT
ATGGGATAAACGTGTCTAGCGGCTGTGCTGAGCTGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13211:1861..2349+

>mRNA_L-elsbetiae_contig13211.2508.1 ID=mRNA_L-elsbetiae_contig13211.2508.1|Name=mRNA_L-elsbetiae_contig13211.2508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig13211:1861..2349+ (Laminarionema elsbetiae ELsaHSoW15)
TCGATCACAGGAAAGCTGGCAGCCCGGCCTGGCCCTAGAAGTCGTGCCCT
TGCGAGCAAAATCCTTCACGGCACGATTGTGCCAGCGCTACTATCTTCAA
CTCTGCTGTCCGCCCCCTGCCTGGTCGTGTTCTTGTATGTAGCCTGGACA
CCTCTCCTGCACCCTCACAAACACCGGTTGATCTCTCGTTCGAAGGATAC
GACTGGCTTGCCGGTGTTCGCAGTCTTATTGTGGCCCTGGAAGTCGTGCC
CTTGCGAACAACACCCTCCACGGCACGATTGTGCGAGCGCTGTCTTCCAA
CCCTGCCTGTCCGGCCCCTGGTCCAGTTCTTGTAGCCTGGACACGCACCT
CTCCTGCACCCTCACGAACACTGATCGACAACGCGGAGAACCTCTCGTTC
GAAGGATACGACTGGCTTGCCGGTGTTCGCTATGTTGTTGTGTTCCAGCT
ATGGGATAATCGATCACAGGAAAGCTGGCAGCCCGGCCTGGCCCTAGAAG
TCGTGCCCTTGCGAGCAAAATCCTTCACGGCACGATTGTGCCAGCGCTAC
TATCTTCAACTCTGCTGTCCGCCCCCTGCCTGGTCGTGTTCTTGTATGTA
GCCTGGACACCTCTCCTGCACCCTCACAAACACCGGTTGATCTCTCGTTC
GAAGGATACGACTGGCTTGCCGGTGTTCGCAGTCTTATTGTGGCCCTGGA
AGTCGTGCCCTTGCGAACAACACCCTCCACGGCACGATTGTGCGAGCGCT
GTCTTCCAACCCTGCCTGTCCGGCCCCTGGTCCAGTTCTTGTAGCCTGGA
CACGCACCTCTCCTGCACCCTCACGAACACTGATCGACAACGCGGAGAAC
CTCTCGTTCGAAGGATACGACTGGCTTGCCGGTGTTCGCTATGTTGTTGT
GTTCCAGCTATGGGATAA
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