mRNA_L-elsbetiae_contig13204.2504.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13204.2504.1
Unique NamemRNA_L-elsbetiae_contig13204.2504.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13204.2504.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.270e-45
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:    1 QARVKAAAEKVPVRTMKENEQLLREKILGSIGGGPFQLLRSFRKMHRGRGTVVDLNDFREAVTTFSLGLGEPEVVAFFKGFDADGSGGIDFE 276
            QA+VKAA+E+VP RTM ENEQLLR+KILGSIGGGPFQLLR+FRKMHRGRGTVVDLNDFREAV TFSLGLGEPEV AFFKGFDADGSGGIDFE
Sbjct:  244 QAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFE 335
[Close]
BLAST of mRNA_L-elsbetiae_contig13204.2504.1 vs. uniprot
Match: A0A6H5KCV0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.880e-9
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  154 VVDLNDFREAVTTFSLGLGEPEVVAFFKGFDADGSGGIDF 273
            V+D   FRE V   +LGL EPE++ FF+ FDADGSGGIDF
Sbjct:    2 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDF 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13204.2504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWU7_ECTSI1.270e-4590.22EF-hand, calcium binding motif n=1 Tax=Ectocarpus ... [more]
A0A6H5KCV0_9PHAE5.880e-962.50EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13204contigL-elsbetiae_contig13204:970..3375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue4.8e-39
Seed eggNOG ortholog2880.D7FWU7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand domain pair
EggNOG OGs28PG7@1,2QW47@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.3422246-CDS-L-elsbetiae_contig13204:969..10921622815500.3422246-CDS-L-elsbetiae_contig13204:969..1092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13204 970..1092 -
1691682928.276605-CDS-L-elsbetiae_contig13204:969..10921691682928.276605-CDS-L-elsbetiae_contig13204:969..1092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13204 970..1092 -
1622815500.356488-CDS-L-elsbetiae_contig13204:3222..33751622815500.356488-CDS-L-elsbetiae_contig13204:3222..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13204 3223..3375 -
1691682928.2861533-CDS-L-elsbetiae_contig13204:3222..33751691682928.2861533-CDS-L-elsbetiae_contig13204:3222..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13204 3223..3375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13204.2504.1prot_L-elsbetiae_contig13204.2504.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13204 970..3375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13204.2504.1

>prot_L-elsbetiae_contig13204.2504.1 ID=prot_L-elsbetiae_contig13204.2504.1|Name=mRNA_L-elsbetiae_contig13204.2504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
QARVKAAAEKVPVRTMKENEQLLREKILGSIGGGPFQLLRSFRKMHRGRG
TVVDLNDFREAVTTFSLGLGEPEVVAFFKGFDADGSGGIDFE
back to top

mRNA from alignment at L-elsbetiae_contig13204:970..3375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13204.2504.1 ID=mRNA_L-elsbetiae_contig13204.2504.1|Name=mRNA_L-elsbetiae_contig13204.2504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2406bp|location=Sequence derived from alignment at L-elsbetiae_contig13204:970..3375- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGAGGGTTAAGGCGGCCGCCGAGAAGGTGCCCGTGCGGACCATGAA
GGAGAACGAGCAGCTCCTCCGAGAGAAAATTCTGGGAAGCATCGGCGGCG
GACCCTTCCAGCTGCTGAGGTCTTTTCGGAAGATGCACCGCGGCAGGGGC
ACGGTGAGACTAGGCTTCGGTGCGGTATGTGTGTGTGTATGTATGTATGT
ATGTATGTAAGTATGTATGTACAGAATGTAGTGCTGTAAATACCAGACCC
CCCCCCTCTGCCTGATGTGAAGAACGGCGGTGCCGCCTACTAGGTACGGT
AGGTGACACAAGATACCACCCCCCCTGGACCGAGTTTAAGACCTCGATGA
ATTACTCCGCAACGAAGAGGGTGCCAGCACCAAACGACTCATTTTCGGAC
AGCCCTCGACTAGATCTTTCCAACGCCACCACCCCATTCGGGCCCACAGG
CACTCTTCTTTTTGCTGGGGAGGAATCAAGCTTTGAAAATCTGTCCACGG
GGGGTGGTATCTTGTGTCACATATGGTGCAGCACCGGCCCGCTCATGAGA
AACCCACTCAAAAGAAAACCGGCCTCAGATTTATTTACCAAAAGAAGGGG
CTCCGTGGCGAGTGCTACACTAAATCCTATGTAACCAAAATCGGGGGCTC
CGTGGCGAGTGCTACACTAAATCCTATATAACCAAAAGCGGGGGCTTCGT
GGCGAGTGCTACACTAAATCCTATACAACCAAAAGCGGGGGCTCCGTGGC
GAGTGCTACACTAAATCCTATATAACTACATAAAGAAACTCAGCCTCGGC
CGAATTTTCAGTTTCTTATGATCGGGCTGGTACTGCTGTGCTGGTACTGC
TGTATAGGAATTTTATTTTTTCCTCCCATTACTGGCGTATTCTTCGTCTG
CCCCTCCGGCTCCCTTCCTCCACTACGGCTAGCTAGACGACGCAACCGGG
ATCACACAGGAGGGGGGGTGGCTCTCCTGCGGTGCCTGCCTTGTTCGTTT
TTATCGCGAGCAGGGTTCAGCACTCCCCACCCTGGTCAACATAAAAAAGT
ACAGTATTATTAACCGACGAAACCGCTTTCAATTTTCCAGGAACGAATGT
ACAAAAAGCACGACATGCTTTGTTATTTTGCTTGTCCGTTTTGTCCATTG
AGGTTGTTGAGTCAGTTAAAACGGTGCCTGATTTAAGAGCCTTTGAAGCG
CCGCAGCTCGGAATGCCACACCAGCCCCCCCCCTCCCCCAAGGTCCTTCT
TGATGAGATCGCATTGATCGAGAGTTTTGGGAGCGTCACAGCTCGGAATG
TCACACCAAACCCGCTCCAAAAGCTCCTTCAGCCGTAGAAGTGTAACTGG
TTTGTTACTCTACTTTTCCAAGTACATATTTATCAATCCTCATTATTTCG
CCGAAATGTAAGATGAGACCTGCATCTCAGGACCCTTTGCATGTTTTTGC
CCCCAAGTGTAAACCTCGATCTCACCGTCGACGAGGGAAAGGGACACAGC
TGAACCGCTTCTCGCGAAAAAAAACTAAAAAAACAACTACAAATGTAGGC
AATTAGCACGCACCGCAGAAGGGGGTCGGGGAAAAGGAACCCTTCTGTCT
GACCACGGTTCAGTACTCTGGCAAGATGCACACCTTGTGGCAAGGAAGCC
TCTATATTATGTAGTGCTTGGGCAATAGATGTGAAGATGAAAAAATCAAT
AGAAGTAAAAACACCTGTGCTGTTCTCGTGTTTGCGGGCAAATACGAGAT
GCATTGTCCTCCTCTGTTGGTCAAGATAAGCGTTCTGTTTTTTGTTCCGC
AATTGTTGTTTTTGTTTGGAAAATATACATACGTACATAATGTACAAGGG
TAAAAGCCGCAGCCTGTGACCACGGGAGTCGGCGGCGGCATGTGTTGATA
TATCTTCATACATATATATATATACGAAGTGTATTTATCTACTTCGAAGT
ATATGTTTTTCTCCTCCCGCTATTGGCATCTTCGTCGTCTGCCCCACTGG
CCCCCGTACTCCACTACGACTATTTCGCTAGACGACCCAACCGGGGTCAC
GCATGTGTACCGATGGATGCGAAGATCGGGACGGTTTTGAGTATGAGAAC
AACAACAACAACAACCACACCAACACCAACAACCACGCACCACCAACAAT
AACAACAACAAATAAGCAACAACAAATAAGCAACAACAACAACAACAACA
ACAACAACAACAAGCAACAACAAACAACAACACCAACGGGACTGTCACGG
GTGTCACGGGACTGTCAACAACAACCAATGCAGGTGGTCGACCTGAACGA
TTTCCGGGAGGCGGTGACGACGTTCAGCCTCGGCCTCGGAGAGCCTGAAG
TGGTGGCCTTCTTCAAGGGCTTCGACGCTGACGGTAGCGGCGGCATCGAT
TTCGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13204:970..3375-

>mRNA_L-elsbetiae_contig13204.2504.1 ID=mRNA_L-elsbetiae_contig13204.2504.1|Name=mRNA_L-elsbetiae_contig13204.2504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig13204:970..3375- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGAGGGTTAAGGCGGCCGCCGAGAAGGTGCCCGTGCGGACCATGAA
GGAGAACGAGCAGCTCCTCCGAGAGAAAATTCTGGGAAGCATCGGCGGCG
GACCCTTCCAGCTGCTGAGGTCTTTTCGGAAGATGCACCGCGGCAGGGGC
ACGCAGGCGAGGGTTAAGGCGGCCGCCGAGAAGGTGCCCGTGCGGACCAT
GAAGGAGAACGAGCAGCTCCTCCGAGAGAAAATTCTGGGAAGCATCGGCG
GCGGACCCTTCCAGCTGCTGAGGTCTTTTCGGAAGATGCACCGCGGCAGG
GGCACGGTGGTCGACCTGAACGATTTCCGGGAGGCGGTGACGACGTTCAG
CCTCGGCCTCGGAGAGCCTGAAGTGGTGGCCTTCTTCAAGGGCTTCGACG
CTGACGGTAGCGGCGGCATCGATTTCGAGGTGGTCGACCTGAACGATTTC
CGGGAGGCGGTGACGACGTTCAGCCTCGGCCTCGGAGAGCCTGAAGTGGT
GGCCTTCTTCAAGGGCTTCGACGCTGACGGTAGCGGCGGCATCGATTTCG
AG
back to top