mRNA_L-elsbetiae_contig1320.2498.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1320.2498.1
Unique NamemRNA_L-elsbetiae_contig1320.2498.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1320.2498.1 vs. uniprot
Match: D7G3P2_ECTSI (Similar to ankyrin 3, epithelial isoform e isoform 19 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P2_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.590e-21
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 HLRQEPTLHHLELSLEVGNEAVVSLLLDLGAEADPEDHWQFGSLIFTPLHLAAKAGQAG 177
            HLRQEP  HHL+++L + ++A+VSLLL+LGA+ADPEDHW +G L FTP+HLAAKAGQAG
Sbjct:   84 HLRQEPEHHHLQVALRICDKAMVSLLLELGADADPEDHWTYGDLFFTPIHLAAKAGQAG 142
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BLAST of mRNA_L-elsbetiae_contig1320.2498.1 vs. uniprot
Match: A0A6H5L850_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L850_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.570e-10
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 HLRQEPTLHHLELSLEVGNEAVVSLLLDLGAEADPEDHW 117
            HLRQEP  HHL+++L +G+EA+VSLLL+LGA+A PEDHW
Sbjct:   66 HLRQEPEHHHLQVALGIGDEAIVSLLLELGADAGPEDHW 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1320.2498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3P2_ECTSI6.590e-2169.49Similar to ankyrin 3, epithelial isoform e isoform... [more]
A0A6H5L850_9PHAE2.570e-1069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1320contigL-elsbetiae_contig1320:4412..4589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2e-17
Seed eggNOG ortholog2880.D7G3P2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.2399085-CDS-L-elsbetiae_contig1320:4412..45891622815498.2399085-CDS-L-elsbetiae_contig1320:4412..4589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1320 4413..4589 -
1691682927.957854-CDS-L-elsbetiae_contig1320:4412..45891691682927.957854-CDS-L-elsbetiae_contig1320:4412..4589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1320 4413..4589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1320.2498.1prot_L-elsbetiae_contig1320.2498.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1320 4413..4589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1320.2498.1

>prot_L-elsbetiae_contig1320.2498.1 ID=prot_L-elsbetiae_contig1320.2498.1|Name=mRNA_L-elsbetiae_contig1320.2498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
HLRQEPTLHHLELSLEVGNEAVVSLLLDLGAEADPEDHWQFGSLIFTPLH
LAAKAGQAG
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mRNA from alignment at L-elsbetiae_contig1320:4412..4589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1320.2498.1 ID=mRNA_L-elsbetiae_contig1320.2498.1|Name=mRNA_L-elsbetiae_contig1320.2498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=178bp|location=Sequence derived from alignment at L-elsbetiae_contig1320:4412..4589- (Laminarionema elsbetiae ELsaHSoW15)
CACCTGCGCCAGGAACCGACGCTTCATCATCTCGAACTTTCCTTGGAGGT
GGGTAATGAGGCCGTCGTGTCCTTGCTGCTGGATCTGGGCGCTGAGGCTG
ACCCGGAAGACCACTGGCAATTTGGCAGTTTGATTTTCACGCCTCTTCAC
CTCGCTGCCAAGGCAGGCCAGGCCGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1320:4412..4589-

>mRNA_L-elsbetiae_contig1320.2498.1 ID=mRNA_L-elsbetiae_contig1320.2498.1|Name=mRNA_L-elsbetiae_contig1320.2498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig1320:4412..4589- (Laminarionema elsbetiae ELsaHSoW15)
CACCTGCGCCAGGAACCGACGCTTCATCATCTCGAACTTTCCTTGGAGGT
GGGTAATGAGGCCGTCGTGTCCTTGCTGCTGGATCTGGGCGCTGAGGCTG
ACCCGGAAGACCACTGGCAATTTGGCAGTTTGATTTTCACGCCTCTTCAC
CTCGCTGCCAAGGCAGGCCAGGCCGGGCACCTGCGCCAGGAACCGACGCT
TCATCATCTCGAACTTTCCTTGGAGGTGGGTAATGAGGCCGTCGTGTCCT
TGCTGCTGGATCTGGGCGCTGAGGCTGACCCGGAAGACCACTGGCAATTT
GGCAGTTTGATTTTCACGCCTCTTCACCTCGCTGCCAAGGCAGGCCAGGC
CGGG
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