mRNA_L-elsbetiae_contig13171.2484.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13171.2484.1
Unique NamemRNA_L-elsbetiae_contig13171.2484.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13171.2484.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.150e-42
Identity = 76/96 (79.17%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:   10 PSSLALIAACLAAPAAAVEYTVSACADLADVDDTLVTGLTIDSSTFACDEYTRFRVRNAMSLKATVPAVEFSNFSLKVLGELTVEPDVIFSGVVEE 297
            P SL  IA+ LA PAAAVEY V+ CADLADVDDT VTGLTID++TFACDEYTRFRVRN+M+LKATV AVEF NFSLKVLGELTVEPDV F+GVV++
Sbjct:    3 PVSLTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQ 98
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BLAST of mRNA_L-elsbetiae_contig13171.2484.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 2.180e-42
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:   16 SLALIAACLAAPAAAVEYTVSACADLADVDDTLVTGLTIDSSTFACDEYTRFRVRNAMSLKATVPAVEFSNFSLKVLGELTVEPDVIFSGVVEE 297
            SL LIA+ LAAPAAAVEYTV+ CADLADVDDT VT LTID+STFACDEYTRFRVRNAM+LKATVPAVEF NFSLKVLGELTVEPDV+F+GVV++
Sbjct:    5 SLTLIASLLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQ 98
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BLAST of mRNA_L-elsbetiae_contig13171.2484.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 4.710e-41
Identity = 79/96 (82.29%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:   10 PSSLALIAACLAAPAAAVEYTVSACADLADVDDTLVTGLTIDSSTFACDEYTRFRVRNAMSLKATVPAVEFSNFSLKVLGELTVEPDVIFSGVVEE 297
            P SL LIA  LAAPAAAVEYTV+ CADLADVDDT VTGLTID+STFACDEYTRF VRN+M+LKATV AVEF NFSLKVLGELTVEPDV F+GVV++
Sbjct:    3 PCSLTLIAGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQ 98
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BLAST of mRNA_L-elsbetiae_contig13171.2484.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.880e-15
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:   73 VSACADLADVDDTLVTGLTIDSSTFACDEYTRFRVRNAMSLKATVPAVEFSNFSLKVLGELTVEPDVIFSGV 288
            V +C + A +D  + T +TI  + FACDEYTR  +R+ M LK++V  V FSNF+LKV G LTVEPDV+F+GV
Sbjct:   26 VGSCTEFAAIDRKVETEVTITEADFACDEYTRLSIRSNMVLKSSVGKVTFSNFALKVYGSLTVEPDVVFTGV 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13171.2484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQG2_ECTSI1.150e-4279.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLJ6_ECTSI2.180e-4285.11Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI4.710e-4182.29Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5KTD4_9PHAE6.880e-1554.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13171contigL-elsbetiae_contig13171:4520..4816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.296716-CDS-L-elsbetiae_contig13171:4519..48161622815496.296716-CDS-L-elsbetiae_contig13171:4519..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13171 4520..4816 +
1691682926.7252672-CDS-L-elsbetiae_contig13171:4519..48161691682926.7252672-CDS-L-elsbetiae_contig13171:4519..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13171 4520..4816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13171.2484.1prot_L-elsbetiae_contig13171.2484.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13171 4520..4816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13171.2484.1

>prot_L-elsbetiae_contig13171.2484.1 ID=prot_L-elsbetiae_contig13171.2484.1|Name=mRNA_L-elsbetiae_contig13171.2484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MKSPSSLALIAACLAAPAAAVEYTVSACADLADVDDTLVTGLTIDSSTFA
CDEYTRFRVRNAMSLKATVPAVEFSNFSLKVLGELTVEPDVIFSGVVEE
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mRNA from alignment at L-elsbetiae_contig13171:4520..4816+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13171.2484.1 ID=mRNA_L-elsbetiae_contig13171.2484.1|Name=mRNA_L-elsbetiae_contig13171.2484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=297bp|location=Sequence derived from alignment at L-elsbetiae_contig13171:4520..4816+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCCCCCTCTTCCCTCGCTTTGATCGCTGCTTGCCTGGCAGCTCC
TGCCGCAGCGGTCGAGTACACGGTGTCGGCATGCGCCGATCTCGCGGACG
TCGATGATACTCTGGTCACAGGCCTCACCATCGACAGCAGCACCTTTGCC
TGCGATGAGTACACCCGCTTCCGCGTGCGCAACGCCATGAGCCTTAAGGC
CACCGTTCCCGCTGTGGAGTTCTCCAACTTCTCGCTGAAGGTTCTCGGGG
AGCTTACGGTCGAGCCGGACGTGATCTTCAGCGGCGTCGTGGAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13171:4520..4816+

>mRNA_L-elsbetiae_contig13171.2484.1 ID=mRNA_L-elsbetiae_contig13171.2484.1|Name=mRNA_L-elsbetiae_contig13171.2484.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig13171:4520..4816+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCCCCCTCTTCCCTCGCTTTGATCGCTGCTTGCCTGGCAGCTCC
TGCCGCAGCGGTCGAGTACACGGTGTCGGCATGCGCCGATCTCGCGGACG
TCGATGATACTCTGGTCACAGGCCTCACCATCGACAGCAGCACCTTTGCC
TGCGATGAGTACACCCGCTTCCGCGTGCGCAACGCCATGAGCCTTAAGGC
CACCGTTCCCGCTGTGGAGTTCTCCAACTTCTCGCTGAAGGTTCTCGGGG
AGCTTACGGTCGAGCCGGACGTGATCTTCAGCGGCGTCGTGGAAGAGATG
AAGTCCCCCTCTTCCCTCGCTTTGATCGCTGCTTGCCTGGCAGCTCCTGC
CGCAGCGGTCGAGTACACGGTGTCGGCATGCGCCGATCTCGCGGACGTCG
ATGATACTCTGGTCACAGGCCTCACCATCGACAGCAGCACCTTTGCCTGC
GATGAGTACACCCGCTTCCGCGTGCGCAACGCCATGAGCCTTAAGGCCAC
CGTTCCCGCTGTGGAGTTCTCCAACTTCTCGCTGAAGGTTCTCGGGGAGC
TTACGGTCGAGCCGGACGTGATCTTCAGCGGCGTCGTGGAAGAG
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