mRNA_L-elsbetiae_contig13170.2483.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13170.2483.1
Unique NamemRNA_L-elsbetiae_contig13170.2483.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13170.2483.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.010e-9
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    1 WGILRDWVLPSTVPQKRLLRAQLHSVECPVGSHPHTYFAAFDRICNMLKEVGDKIGEQEKLQAMIEQLPEEYAIQK 228
            W  +R+W LP+T  ++RLL  QL +VE   G +P  +FA  D I N ++ VG +  E++ +Q ++ QL  +Y +++
Sbjct:  474 WTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVER 549
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13170.2483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L089_9PHAE7.010e-935.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13170contigL-elsbetiae_contig13170:3672..3929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.2502935-CDS-L-elsbetiae_contig13170:3671..39291622815496.2502935-CDS-L-elsbetiae_contig13170:3671..3929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13170 3672..3929 +
1691682926.7137456-CDS-L-elsbetiae_contig13170:3671..39291691682926.7137456-CDS-L-elsbetiae_contig13170:3671..3929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13170 3672..3929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13170.2483.1prot_L-elsbetiae_contig13170.2483.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13170 3672..3929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13170.2483.1

>prot_L-elsbetiae_contig13170.2483.1 ID=prot_L-elsbetiae_contig13170.2483.1|Name=mRNA_L-elsbetiae_contig13170.2483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
WGILRDWVLPSTVPQKRLLRAQLHSVECPVGSHPHTYFAAFDRICNMLKE
VGDKIGEQEKLQAMIEQLPEEYAIQKAILQDKAGVT
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mRNA from alignment at L-elsbetiae_contig13170:3672..3929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13170.2483.1 ID=mRNA_L-elsbetiae_contig13170.2483.1|Name=mRNA_L-elsbetiae_contig13170.2483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig13170:3672..3929+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGGTATTCTGAGGGACTGGGTGTTGCCTTCCACTGTACCCCAAAAGCG
TCTTTTGCGGGCGCAACTCCACAGCGTCGAGTGCCCTGTGGGTAGTCACC
CCCACACATACTTCGCGGCGTTCGATAGAATCTGCAACATGCTGAAGGAG
GTTGGTGACAAAATTGGAGAACAAGAGAAGTTGCAAGCTATGATCGAACA
ACTACCCGAGGAATACGCCATCCAAAAGGCAATTCTCCAAGACAAGGCAG
GTGTGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13170:3672..3929+

>mRNA_L-elsbetiae_contig13170.2483.1 ID=mRNA_L-elsbetiae_contig13170.2483.1|Name=mRNA_L-elsbetiae_contig13170.2483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig13170:3672..3929+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGGTATTCTGAGGGACTGGGTGTTGCCTTCCACTGTACCCCAAAAGCG
TCTTTTGCGGGCGCAACTCCACAGCGTCGAGTGCCCTGTGGGTAGTCACC
CCCACACATACTTCGCGGCGTTCGATAGAATCTGCAACATGCTGAAGGAG
GTTGGTGACAAAATTGGAGAACAAGAGAAGTTGCAAGCTATGATCGAACA
ACTACCCGAGGAATACGCCATCCAAAAGGCAATTCTCCAAGACAAGGCAG
GTGTGACGTGGGGTATTCTGAGGGACTGGGTGTTGCCTTCCACTGTACCC
CAAAAGCGTCTTTTGCGGGCGCAACTCCACAGCGTCGAGTGCCCTGTGGG
TAGTCACCCCCACACATACTTCGCGGCGTTCGATAGAATCTGCAACATGC
TGAAGGAGGTTGGTGACAAAATTGGAGAACAAGAGAAGTTGCAAGCTATG
ATCGAACAACTACCCGAGGAATACGCCATCCAAAAGGCAATTCTCCAAGA
CAAGGCAGGTGTGACG
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