mRNA_L-elsbetiae_contig1317.2482.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1317.2482.1
Unique NamemRNA_L-elsbetiae_contig1317.2482.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1317.2482.1 vs. uniprot
Match: A0A6H5L8S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.520e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 2 
Query:    2 QENVELMTKRRVPLENRDEETSLSDVQQLAKLLTHQLSELQRS 130
            QENVELMTKR+VPLENRDEETSLSDVQQLAKLLTHQLSELQ S
Sbjct:  255 QENVELMTKRQVPLENRDEETSLSDVQQLAKLLTHQLSELQDS 297
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1317.2482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8S0_9PHAE2.520e-1395.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1317contigL-elsbetiae_contig1317:25585..26319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002830.1
Exons2
Model size370
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1317.2482.1prot_L-elsbetiae_contig1317.2482.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1317 25678..26300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.0435548-UTR-L-elsbetiae_contig1317:25584..256771622815496.0435548-UTR-L-elsbetiae_contig1317:25584..25677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 25585..25677 -
1691682926.600546-UTR-L-elsbetiae_contig1317:25584..256771691682926.600546-UTR-L-elsbetiae_contig1317:25584..25677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 25585..25677 -
1622815496.0821638-UTR-L-elsbetiae_contig1317:26300..263191622815496.0821638-UTR-L-elsbetiae_contig1317:26300..26319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 26301..26319 -
1691682926.6261182-UTR-L-elsbetiae_contig1317:26300..263191691682926.6261182-UTR-L-elsbetiae_contig1317:26300..26319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 26301..26319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.0552185-CDS-L-elsbetiae_contig1317:25677..258691622815496.0552185-CDS-L-elsbetiae_contig1317:25677..25869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 25678..25869 -
1691682926.6090536-CDS-L-elsbetiae_contig1317:25677..258691691682926.6090536-CDS-L-elsbetiae_contig1317:25677..25869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 25678..25869 -
1622815496.0676892-CDS-L-elsbetiae_contig1317:26234..263001622815496.0676892-CDS-L-elsbetiae_contig1317:26234..26300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 26235..26300 -
1691682926.617141-CDS-L-elsbetiae_contig1317:26234..263001691682926.617141-CDS-L-elsbetiae_contig1317:26234..26300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 26235..26300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1317.2482.1

>prot_L-elsbetiae_contig1317.2482.1 ID=prot_L-elsbetiae_contig1317.2482.1|Name=mRNA_L-elsbetiae_contig1317.2482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
MTKRRVPLENRDEETSLSDVQQLAKLLTHQLSELQRSDEDGGGGGGNRQA
SKQRGPSRSVLAGATCSASANGTIPEGVEDGETES*
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mRNA from alignment at L-elsbetiae_contig1317:25585..26319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1317.2482.1 ID=mRNA_L-elsbetiae_contig1317.2482.1|Name=mRNA_L-elsbetiae_contig1317.2482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=735bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:25585..26319- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGAGAACGTCGAGCTCATGACGAAACGCCGGGTGCCGCTGGAAAACC
GAGACGAAGAGACCAGTCTCAGCGACGTTCAGCAGGTGGGGGCTTCGTGG
TTGCTGTTTTTGTTGGTGTTGGTGGTGGTGGTGGTGGTGGTGTTGTTCTC
CTTCTTCCTCTTCTTGGTGTTAATGTTGTTGGCATTGATTGGCGTTGTTG
GCGTCGTCGGTTTGTTGTTTTGATTGTTGGTGGCAGTGTTTTTTCTGCGC
GCCGGTTTGGAGAATTGGATCGTCTTGTTCGGGGGTGCCGTGTTTTCTCC
TCCTATTGGCTTGCGGTACGTACCTCGTGTTGTAGCCTCAACCTTGCCTG
TCTTTTGCCCCCCTTTTCTATCCTCACCCCGTCCCCCCTATATATTGCAC
TTCACTTGCGACGTATCGGTTTTGTACGATGTGGTTCCCGCCGGGCGCAG
CTCGCGAAGCTCTTGACTCACCAGCTATCGGAGCTCCAGCGCAGCGACGA
GGACGGGGGCGGGGGCGGCGGCAACCGGCAGGCGTCAAAGCAACGCGGGC
CCTCCCGCTCCGTCCTGGCAGGCGCCACTTGTAGCGCCAGCGCCAATGGC
ACGATCCCCGAGGGTGTCGAGGACGGCGAAACAGAAAGCTAGTCGCTGGT
GGCCGCGAGATGCTTGGGGTTGGGGTTGGGGGGGGCTCACCCTCACGTCG
CGTATCCCCTTGGGGGCCCGTTTCCGAGAAACAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1317:25585..26319-

>mRNA_L-elsbetiae_contig1317.2482.1 ID=mRNA_L-elsbetiae_contig1317.2482.1|Name=mRNA_L-elsbetiae_contig1317.2482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:25585..26319- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGAAACGCCGGGTGCCGCTGGAAAACCGAGACGAAGAGACCAGTCT
CAGCGACGTTCAGCAGATGACGAAACGCCGGGTGCCGCTGGAAAACCGAG
ACGAAGAGACCAGTCTCAGCGACGTTCAGCAGCTCGCGAAGCTCTTGACT
CACCAGCTATCGGAGCTCCAGCGCAGCGACGAGGACGGGGGCGGGGGCGG
CGGCAACCGGCAGGCGTCAAAGCAACGCGGGCCCTCCCGCTCCGTCCTGG
CAGGCGCCACTTGTAGCGCCAGCGCCAATGGCACGATCCCCGAGGGTGTC
GAGGACGGCGAAACAGAAAGCTAGCTCGCGAAGCTCTTGACTCACCAGCT
ATCGGAGCTCCAGCGCAGCGACGAGGACGGGGGCGGGGGCGGCGGCAACC
GGCAGGCGTCAAAGCAACGCGGGCCCTCCCGCTCCGTCCTGGCAGGCGCC
ACTTGTAGCGCCAGCGCCAATGGCACGATCCCCGAGGGTGTCGAGGACGG
CGAAACAGAAAGCTAG
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