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Homology
BLAST of mRNA_L-elsbetiae_contig1317.2481.1 vs. uniprot
Match: D7FUL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL0_ECTSI) HSP 1 Score: 275 bits (702), Expect = 1.980e-91 Identity = 136/168 (80.95%), Postives = 156/168 (92.86%), Query Frame = 1
Query: 1 MSATGFGICGQKNTYSTRTKCGNWVEDRIGKTIAASLAKAPRPALGSTVERDDFINPATMTNTTVLPGDDTKVLTAADIKDKNREGVSFDLLFGHVRDSKHADDLRHGRFLTNAWESFPVTSAMPAEVRQGSARARDFRTRRRIAEMARERRQAETLTTTARLQSSRA 504
MSATGFGICGQKN+YS++TKCGNWVEDRIGK IA LAKAPRPALGSTVER+DF++P+TMTN TV+ GDDTK+++A+DIKDKNREGVSFDLLFGHVRDS HAD LR RFLTNAWESFPVTS M ++VR+ SARARDFRTR+R+AEMAR+RRQ++TLTTTARLQSSRA
Sbjct: 1 MSATGFGICGQKNSYSSKTKCGNWVEDRIGKAIAKRLAKAPRPALGSTVEREDFVHPSTMTNNTVVSGDDTKMMSASDIKDKNREGVSFDLLFGHVRDSHHADTLRQDRFLTNAWESFPVTSVMSSQVRERSARARDFRTRQRLAEMARDRRQSQTLTTTARLQSSRA 168
BLAST of mRNA_L-elsbetiae_contig1317.2481.1 vs. uniprot
Match: A0A7S2UWY1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWY1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.400e-15 Identity = 50/118 (42.37%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 1 MSATGFGICGQKNTYSTRTKCGNWVEDRIGKTIAASLAKAPRPALGSTVERDDFINPATMTNTTVLPGDDTKVLTAADIKDKNREGVSFDLLFGHVRDSKHADDLRHGRFLTNAWESF 354
MS GFGI G KN YS+ +CGNWVED IG +A + + T R DF NP+ +T T +P D+ K+ T+ +IK +NR+G S+DL+F H S+ DL+ R+ T +SF
Sbjct: 1 MSGQGFGISGHKNNYSSSVRCGNWVEDLIGDELANTRPGTRMDLM--TTNRADFRNPSRVT-TPHVP-DNIKMETSREIKQRNRDGQSYDLIFTHCL-SEDPADLQSQRYKTTVGKSF 113
BLAST of mRNA_L-elsbetiae_contig1317.2481.1 vs. uniprot
Match: A0A485KWH6_9STRA (Aste57867_12769 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWH6_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 1.720e-5 Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query: 1 MSATGFGICGQKNTYSTRTKCGNWVEDRIGKTIAASLAKAPRPALGSTVERDDFINPATM-TNTTVLPGDDTKVLTAADIKDKNREGVSFDLLFGH 285
MSA G+GI G KN++S+R K GN+VED+ G +A P G T +D F +P+ + T+ TV P + + + R G+S++LLF H
Sbjct: 1 MSA-GYGISGHKNSFSSRVKIGNYVEDQYGAKLARESVACPMN--GKTEVQDKFGDPSAIHTSETVPPTPEAETQSYV-----QRTGLSYNLLFPH 88
BLAST of mRNA_L-elsbetiae_contig1317.2481.1 vs. uniprot
Match: A0A1V9YU60_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YU60_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 6.130e-5 Identity = 47/175 (26.86%), Postives = 82/175 (46.86%), Query Frame = 1
Query: 1 MSATGFGICGQKNTYSTRTKCGNWVEDRIGKTIAASLAKAPRPALGSTVERDDFINPATMTNTTVLPGDDTKVLTAADIKDKNREGVSFDLLFGHVRDSKHADD--------LRHGRFLTNAWESFPVTSAM-PAEVRQGSARARDFRTRRRIAEMARERRQAETLTTTARLQSS 498
MS+TG+GI G KN++S+R K GN+VED+ G +A + + P+ G + +D F +P P +D + A + G+++ LF H K D L HG + + F S + P + + A+ ++++A RE+R ++ T A+ S+
Sbjct: 1 MSSTGYGISGHKNSFSSRVKVGNFVEDQFGAQLAKASVEWPQH--GRSEVQDAFSDPRCKP-----PPEDKRSAHHATEAYVAQSGLAYTTLFPHGPPGKEGDSTDWCTTNQLLHGTTRIPSHKVFENGSNIGPQSIDMSTKHAKAIELQKKLA---REKRMEQSYATAAQASSA 165
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 277.3 |
| Seed ortholog evalue | 4.7e-72 |
| Seed eggNOG ortholog | 2880.D7FUL0 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E8UQ@1,2SF9R@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-02_002840.1 |
| Exons | 4 |
| Model size | 685 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815496.1596892-CDS-L-elsbetiae_contig1317:19907..19990 | 1622815496.1596892-CDS-L-elsbetiae_contig1317:19907..19990 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 19908..19990 + |
| 1691682926.6566386-CDS-L-elsbetiae_contig1317:19907..19990 | 1691682926.6566386-CDS-L-elsbetiae_contig1317:19907..19990 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 19908..19990 + |
| 1622815496.1784635-CDS-L-elsbetiae_contig1317:20551..20699 | 1622815496.1784635-CDS-L-elsbetiae_contig1317:20551..20699 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 20552..20699 + |
| 1691682926.6688395-CDS-L-elsbetiae_contig1317:20551..20699 | 1691682926.6688395-CDS-L-elsbetiae_contig1317:20551..20699 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 20552..20699 + |
| 1622815496.1880908-CDS-L-elsbetiae_contig1317:21521..21611 | 1622815496.1880908-CDS-L-elsbetiae_contig1317:21521..21611 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 21522..21611 + |
| 1691682926.6789634-CDS-L-elsbetiae_contig1317:21521..21611 | 1691682926.6789634-CDS-L-elsbetiae_contig1317:21521..21611 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 21522..21611 + |
| 1622815496.1979597-CDS-L-elsbetiae_contig1317:22488..22677 | 1622815496.1979597-CDS-L-elsbetiae_contig1317:22488..22677 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 22489..22677 + |
| 1691682926.6887295-CDS-L-elsbetiae_contig1317:22488..22677 | 1691682926.6887295-CDS-L-elsbetiae_contig1317:22488..22677 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1317 22489..22677 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815496.2136774-UTR-L-elsbetiae_contig1317:22677..22852 | 1622815496.2136774-UTR-L-elsbetiae_contig1317:22677..22852 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1317 22678..22852 + |
| 1691682926.6999373-UTR-L-elsbetiae_contig1317:22677..22852 | 1691682926.6999373-UTR-L-elsbetiae_contig1317:22677..22852 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1317 22678..22852 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1317.2481.1 >prot_L-elsbetiae_contig1317.2481.1 ID=prot_L-elsbetiae_contig1317.2481.1|Name=mRNA_L-elsbetiae_contig1317.2481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MSATGFGICGQKNTYSTRTKCGNWVEDRIGKTIAASLAKAPRPALGSTVE
RDDFINPATMTNTTVLPGDDTKVLTAADIKDKNREGVSFDLLFGHVRDSK
HADDLRHGRFLTNAWESFPVTSAMPAEVRQGSARARDFRTRRRIAEMARE
RRQAETLTTTARLQSSRAA* back to topmRNA from alignment at L-elsbetiae_contig1317:19908..22852+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1317.2481.1 ID=mRNA_L-elsbetiae_contig1317.2481.1|Name=mRNA_L-elsbetiae_contig1317.2481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2945bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:19908..22852+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGCAACAGGCTTTGGGATATGCGGCCAGAAGAACACCTATAGCAC
AAGGACGAAATGCGGAAACTGGGTCGAGGATAGGTGGGTGTTGTGTAATC
TACATTTTTTAGTCTTTTTTCTTTTTCTTTTTTCCGCCCATCATTGGCAT
ATTTGTCGTCTGCCTCGCTGGCCCCGATCCTCCACTACGACTAGCTAGAC
GGTCCAGCCGGGGTCACACAGGAGCGGGAGTTGGGCCTCCTCCTGCGGTG
CCTGCGTTAGATGTTTTTATCGCGAACAGGGTTCAGCGCTCCCCACCCTC
GTCAACTATGAAGTCGAAGTATTAGACTATTCACTGTTGTATAGAAGGTG
CTTGCTCTCTTGCCTCTCTCTTCGTGAAAGAGCGTGATCAGACCTACAAC
AGTGTGCGCTTGAATAAATAATTAAACGGCCCGAATATCTAATGCAGCGC
GTGTCAGACTGCTACGAATGTCAACAACCAAGTGGGTAGATATATGGAGT
AGGCAAAATATGTGTATTTTCTTTTTATTAATTAGTCTAGACTAATTAAT
TATTTGGTTTGGGGCAGGCAATAATATTAGGCATCCCTCGTTCTCACCTG
TTGATTCCATTTGGCTTACTGGTGTGTACACGGTCTTTACGCAGAATCGG
AAAGACAATAGCTGCGAGCCTGGCCAAAGCGCCACGACCGGCACTGGGCT
CGACAGTCGAGCGCGACGACTTTATCAACCCTGCCACGATGACGAACACC
ACGGTGCTGCCGGGAGACGACACAAAAGTCCTCACCGCAGCGGTGAGACC
AAGACCAAAAAGCACATGGCGCATACGGTAGTGCATGAGAGACAATCAAA
CAAGAAACTCTGAGCAGTAGGAGAGAGATACGATGCAAGATGTCTGCAAT
AATCAATTCGGTACCTAGGCTACATAGGCTAGTCTACATCTATGTACCCT
CTCGATAGTAGTAGTCTAGAAAACAATGTAAATGTAGATAGTATTAGACG
CAAACCTTTGCACGAATAGGCTATTTTGCTGCAACATTGGCACAATGTTG
CAATATCTTGCTCCTCGACAAAAATCAAACTTGAAGTCTGCCAGAATGGG
CAGGAGATTTAGAAACCTCTAGACCAGAGCTTTAATTGTTCGATTCCGAG
CTCTTGGCGATGAAAAGTGCCCAACAGTGCGAAAAAAGCAACTTTTCTCA
AAATGAACTTTCTGCTCCCAAAAAAAACGATGTCAAGGATAAAAATCTCC
TATTATGAGCGAGGGTCGGGTTCTTATATCTCCATCAGTAAGCCAATTGT
CGAAATATCTCTTTTATGCTCCCAACTGCAGATTTCTCTTCCGGGCGTCT
CAAATGTGGGCAGGTTACATAGAAATCAGCGAATCAAAAATTGAGCCCAG
CGCACAGAGTAGAGTCGTGACTCCGTGGGGTTCAACCGGTATTCTACATG
GTGACGGTGTGTTGATGGTCCAGTGGAGTACAAAAACACCTGAGATGTTC
CAAAGAAATCAACACCTCTCCTGCACAGGTTCTTATATTGAAGTTTTTGA
GCCAGGGTTTCTTAACTCCCAAGTTCTTAAGAAGAGATGGCGCGTTCTGT
AAAACCACAACCAGGACATCAAGGATAAGAATCGGGAGGGCGTTTCCTTC
GACCTTCTGTTCGGCCACGTTCGAGACAGCAAGCACGCGGACGACCTCCG
ACATGTAAGCAGCGTACACGTACATGTATGTACATATGGTGTTCATAATG
CGGATCGGCTGAATCCGAATGAACGCACAGTGCATATGTACATGAACTGT
ATAGATATTTCGATTTATGATGGCACGACGGTGTTCGTCGGCGTCAACAA
AAAAGTAGGCGCACAGATTATTACGTAGATAGATTTCTCTTGGGTGTGCC
AAAAACGAGAAAACGTCAGGACTGGCGTACTCGCGACGTGGATGGAGGTC
ATAATCCTTTACAAAGGTTATCGACCTCCCATTGTCTGCATATGACGTTT
TGGCCCCTTTCACATTATTTATTTGGCGTCGCAAAGAGGTGTATCGCGAA
ATATGCGAAGTCAAATCGACCTTGAATCCCTTGAGCTACATATGCTGATG
GGAGGAGCGGGGGGCTTTCTAGAGTGTAGCAGCTCTCTCTCCCCCCACCT
CTCCCCCGCACACCTCTCTGGCAGATCCTCCACATCGCCGCACGACGTTG
AAATGTTTGCTCCTCGTTTAAAGAAGAAGTAGATGCCTCACGACCACCGT
GCACTGCTTCTCCTAGTCCCTCTACTACAGAACATGTCTCCGCTTCGTAA
CACAATCTTGAAGGGGGGGGGGGGGCGTGACGCGCGCGGTGCAATATCAG
CCCCTAGAACTCTCCGCCCCCGGTCTTTGCGCCGAAAGCAGAAGGCCCCC
CCCACCTACCGTTCATATGCTCGTTGCAATATCTGTACGTAAGATAACCT
ACCGACACAAACGGTCGGTACTCTAGCTGTATCTTGCAACGCCTCCATTC
TGATGATCTGATGACGCACCACTCCCACTTCGACACCATCCCCACGTTTC
CGACATCCCGCCGCTCCCTCTTCGTTTTCAGGGCCGTTTCCTGACGAACG
CCTGGGAGTCGTTCCCGGTGACTAGCGCGATGCCGGCCGAAGTTCGACAG
GGCTCCGCTCGCGCCCGCGACTTTCGCACCCGGCGGCGCATCGCGGAGAT
GGCGCGGGAACGTCGGCAGGCGGAGACGCTGACGACGACCGCTAGATTGC
AGAGCTCTCGGGCTGCGTAGCGTTACCACGGGAGGCAAACGGCGAAGAGA
GGGAAACAACGCCGAGAGAGAGACACACAAACAGACGGACAGGAAAACAG
ACAGACAGACAGACAGAAAACTGGTAGATCGACAGACAGAGGGGCTGCAG
AGAGGCAGACAGACGGGGTAGCGGGAAAGCCAGGTTGGAGGAGAA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1317:19908..22852+ >mRNA_L-elsbetiae_contig1317.2481.1 ID=mRNA_L-elsbetiae_contig1317.2481.1|Name=mRNA_L-elsbetiae_contig1317.2481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:19908..22852+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGCAACAGGCTTTGGGATATGCGGCCAGAAGAACACCTATAGCAC
AAGGACGAAATGCGGAAACTGGGTCGAGGATAGATGAGTGCAACAGGCTT
TGGGATATGCGGCCAGAAGAACACCTATAGCACAAGGACGAAATGCGGAA
ACTGGGTCGAGGATAGAATCGGAAAGACAATAGCTGCGAGCCTGGCCAAA
GCGCCACGACCGGCACTGGGCTCGACAGTCGAGCGCGACGACTTTATCAA
CCCTGCCACGATGACGAACACCACGGTGCTGCCGGGAGACGACACAAAAG
TCCTCACCGCAGCGAATCGGAAAGACAATAGCTGCGAGCCTGGCCAAAGC
GCCACGACCGGCACTGGGCTCGACAGTCGAGCGCGACGACTTTATCAACC
CTGCCACGATGACGAACACCACGGTGCTGCCGGGAGACGACACAAAAGTC
CTCACCGCAGCGGACATCAAGGATAAGAATCGGGAGGGCGTTTCCTTCGA
CCTTCTGTTCGGCCACGTTCGAGACAGCAAGCACGCGGACGACCTCCGAC
ATGACATCAAGGATAAGAATCGGGAGGGCGTTTCCTTCGACCTTCTGTTC
GGCCACGTTCGAGACAGCAAGCACGCGGACGACCTCCGACATGGCCGTTT
CCTGACGAACGCCTGGGAGTCGTTCCCGGTGACTAGCGCGATGCCGGCCG
AAGTTCGACAGGGCTCCGCTCGCGCCCGCGACTTTCGCACCCGGCGGCGC
ATCGCGGAGATGGCGCGGGAACGTCGGCAGGCGGAGACGCTGACGACGAC
CGCTAGATTGCAGAGCTCTCGGGCTGCGTAGGGCCGTTTCCTGACGAACG
CCTGGGAGTCGTTCCCGGTGACTAGCGCGATGCCGGCCGAAGTTCGACAG
GGCTCCGCTCGCGCCCGCGACTTTCGCACCCGGCGGCGCATCGCGGAGAT
GGCGCGGGAACGTCGGCAGGCGGAGACGCTGACGACGACCGCTAGATTGC
AGAGCTCTCGGGCTGCGTAG back to top
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