mRNA_L-elsbetiae_contig1317.2480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1317.2480.1
Unique NamemRNA_L-elsbetiae_contig1317.2480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1317.2480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1317contigL-elsbetiae_contig1317:4246..5772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size972
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1317.2480.1prot_L-elsbetiae_contig1317.2480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1317 4247..5314 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.9672115-UTR-L-elsbetiae_contig1317:4245..42461622815495.9672115-UTR-L-elsbetiae_contig1317:4245..4246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 4246..4246 +
1691682926.5573797-UTR-L-elsbetiae_contig1317:4245..42461691682926.5573797-UTR-L-elsbetiae_contig1317:4245..4246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 4246..4246 +
1622815496.0082297-UTR-L-elsbetiae_contig1317:5314..57721622815496.0082297-UTR-L-elsbetiae_contig1317:5314..5772Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 5315..5772 +
1691682926.5900111-UTR-L-elsbetiae_contig1317:5314..57721691682926.5900111-UTR-L-elsbetiae_contig1317:5314..5772Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 5315..5772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.98094-CDS-L-elsbetiae_contig1317:4246..46061622815495.98094-CDS-L-elsbetiae_contig1317:4246..4606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 4247..4606 +
1691682926.572582-CDS-L-elsbetiae_contig1317:4246..46061691682926.572582-CDS-L-elsbetiae_contig1317:4246..4606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 4247..4606 +
1622815495.9956288-CDS-L-elsbetiae_contig1317:5161..53141622815495.9956288-CDS-L-elsbetiae_contig1317:5161..5314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 5162..5314 +
1691682926.5823288-CDS-L-elsbetiae_contig1317:5161..53141691682926.5823288-CDS-L-elsbetiae_contig1317:5161..5314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 5162..5314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1317.2480.1

>prot_L-elsbetiae_contig1317.2480.1 ID=prot_L-elsbetiae_contig1317.2480.1|Name=mRNA_L-elsbetiae_contig1317.2480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
MVYYRAHAEEGMVDVANKKCTHHGCTKRPSYGKVNGKSEFCSVHAEDGMV
NVTKKQDMLSLRKRRSVDATVDAKQKRPRLVKEEAVEEKVDAASATTTLA
EVGATQPFMGLGKGRKGRQSLNGTLFLLGVGSHFPPSQDTPPERLDRRGR
PLHVLQSHVNTEGCTAARYK*
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mRNA from alignment at L-elsbetiae_contig1317:4246..5772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1317.2480.1 ID=mRNA_L-elsbetiae_contig1317.2480.1|Name=mRNA_L-elsbetiae_contig1317.2480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1527bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:4246..5772+ (Laminarionema elsbetiae ELsaHSoW15)
GATGGTGTACTACCGTGCCCATGCCGAGGAAGGGATGGTGGACGTGGCCA
ACAAGAAATGCACCCACCACGGTTGTACCAAGCGGCCATCATACGGCAAG
GTTAACGGCAAGTCAGAGTTCTGCAGTGTCCATGCTGAGGACGGGATGGT
GAACGTGACCAAGAAACAAGATATGCTTAGTCTCAGGAAGAGACGCTCCG
TCGACGCCACGGTAGACGCAAAACAGAAACGACCACGCCTTGTCAAAGAA
GAAGCCGTAGAGGAAAAGGTAGATGCAGCATCAGCAACAACGACCTTGGC
TGAGGTGGGCGCCACACAACCGTTCATGGGCTTGGGGAAAGGGCGAAAAG
GGAGACAGAGTGGTAAATAAAGGTGAGCTTCCCCCGGCCATCAGCCTTTA
GATTTTCGAACGAATGCGCACTCGTGTCGATGTGTGAGGTGTATTTGAGA
CCATCGAAATCCTGTACGTGCCGCCACGGGCTTGACAGAAAGAGGTTGCG
TCTAGCTTGGGGTGGCGACAGCAAATGGCCGCACGCGCAACCGCTATGAT
GCCCCATCCCGCCCCAGCTCATATTGTAGCCATTCCGGAACATTGTTTGA
GTATTTAGCGTCTTCCGGAAAGTATGTGGTTCGTTTTGCTCGGTGTTCAC
GCGTGTCTTCAGACATAAAGAGGGCGGCCACATCGGTCCAAGCACTCTGG
AGGGGTGTCCTGGGTAGAAGGGTAGTAGCAGTGGCTGCCGCCTGGGGGAA
GAAGGCACCTTTCAACAGCAAGCCCAGCTTTAAAGCAGGCGAAACCACAG
TGCAGGCAATGCCAATGTACCATGTATCAAGATACGTTGGTTTCTGTTTT
TCATCAATCTTCACCAGTCGTTGTCTCCCTCTTGTTACGTGGCTCTCTGT
ACAGCTGCGCTTGCTGCTCAATGGTACCTTATTTCTCCTCGGTGTTGGGA
GCCACTTCCCTCCTAGCCAAGACACCCCTCCAGAGCGCTTGGACCGACGT
GGCCGCCCTCTTCATGTTCTGCAGTCACACGTGAACACTGAGGGATGTAC
TGCTGCAAGATACAAGTAGTTTTATGAAACCTCGCATGAAGACCACGGGG
CTAGATGGGTGGGGCGGAGGTACCTGCTGATTAACGAACTAGGAGCTGTT
GTCTTTTGGCTAGTGACGAAGGTGTAATCCTCCGCTGATTCTCGATCAAA
TGCTTGAAGTACATTGACGGCAATAAGTGGGTATGCCGCACCAGTCCCTG
CGTGGGAGTTGTGATGTTTCAGACTGCACCGTAAATATAACACAGCAAGT
AGGGGTATACGGGAAGGGCGGCGACTGCGCTTTTCTTGCCGTGCCTCATG
TATTTGCCGGTGGTGGTGCATGTTTGATACCGTAGTGCTTTTTATTTGAC
TGGCACATAACCTTGGCGGAACCAAAAGGAGCGTTCTGCCTGAGGATTCG
GCGGCGATAGCTAGGGTCATCGATCCGTTTTCACATGTTTGGGAACATGT
TGACGATGAGGCCCTCGGAGGAGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1317:4246..5772+

>mRNA_L-elsbetiae_contig1317.2480.1 ID=mRNA_L-elsbetiae_contig1317.2480.1|Name=mRNA_L-elsbetiae_contig1317.2480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:4246..5772+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTACTACCGTGCCCATGCCGAGGAAGGGATGGTGGACGTGGCCAA
CAAGAAATGCACCCACCACGGTTGTACCAAGCGGCCATCATACGGCAAGG
TTAACGGCAAGTCAGAGTTCTGCAGTGTCCATGCTGAGGACGGGATGGTG
AACGTGACCAAGAAACAAGATATGCTTAGTCTCAGGAAGAGACGCTCCGT
CGACGCCACGGTAGACGCAAAACAGAAACGACCACGCCTTGTCAAAGAAG
AAGCCGTAGAGGAAAAGGTAGATGCAGCATCAGCAACAACGACCTTGGCT
GAGGTGGGCGCCACACAACCGTTCATGGGCTTGGGGAAAGGGCGAAAAGG
GAGACAGAGTATGGTGTACTACCGTGCCCATGCCGAGGAAGGGATGGTGG
ACGTGGCCAACAAGAAATGCACCCACCACGGTTGTACCAAGCGGCCATCA
TACGGCAAGGTTAACGGCAAGTCAGAGTTCTGCAGTGTCCATGCTGAGGA
CGGGATGGTGAACGTGACCAAGAAACAAGATATGCTTAGTCTCAGGAAGA
GACGCTCCGTCGACGCCACGGTAGACGCAAAACAGAAACGACCACGCCTT
GTCAAAGAAGAAGCCGTAGAGGAAAAGGTAGATGCAGCATCAGCAACAAC
GACCTTGGCTGAGGTGGGCGCCACACAACCGTTCATGGGCTTGGGGAAAG
GGCGAAAAGGGAGACAGAGTCTCAATGGTACCTTATTTCTCCTCGGTGTT
GGGAGCCACTTCCCTCCTAGCCAAGACACCCCTCCAGAGCGCTTGGACCG
ACGTGGCCGCCCTCTTCATGTTCTGCAGTCACACGTGAACACTGAGGGAT
GTACTGCTGCAAGATACAAGTAGCTCAATGGTACCTTATTTCTCCTCGGT
GTTGGGAGCCACTTCCCTCCTAGCCAAGACACCCCTCCAGAGCGCTTGGA
CCGACGTGGCCGCCCTCTTCATGTTCTGCAGTCACACGTGAACACTGAGG
GATGTACTGCTGCAAGATACAAGTAG
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