mRNA_L-elsbetiae_contig1317.2479.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1317.2479.1
Unique NamemRNA_L-elsbetiae_contig1317.2479.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1317.2479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1317contigL-elsbetiae_contig1317:2536..4102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1567
Cds size1032
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.1152744-UTR-L-elsbetiae_contig1317:2535..30701622815496.1152744-UTR-L-elsbetiae_contig1317:2535..3070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 2536..3070 +
1691682926.6354167-UTR-L-elsbetiae_contig1317:2535..30701691682926.6354167-UTR-L-elsbetiae_contig1317:2535..3070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1317 2536..3070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.1268036-CDS-L-elsbetiae_contig1317:3070..41021622815496.1268036-CDS-L-elsbetiae_contig1317:3070..4102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 3071..4102 +
1691682926.6461782-CDS-L-elsbetiae_contig1317:3070..41021691682926.6461782-CDS-L-elsbetiae_contig1317:3070..4102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1317 3071..4102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1317.2479.1prot_L-elsbetiae_contig1317.2479.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1317 3071..4102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1317.2479.1

>prot_L-elsbetiae_contig1317.2479.1 ID=prot_L-elsbetiae_contig1317.2479.1|Name=mRNA_L-elsbetiae_contig1317.2479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp
MPRKCTRQGCPKQPSYGKAGGKVEYCRDHAVDGMVNVRNKKCTHHGCTRV
PSYGKAGGRAEYCRDHAVHGMVNVKSKRCTDQGCTKWPSYGKAGGKVEYC
RDHAEDGMVDVANKKCTHLGCTKQPSFGKVDGRAEFCRVHAEDGMVDVQC
KRCTQHGCTKRPSFGDAGGRMVYCRAHVKDGMVNVKSKRCIHHGCAKRPS
YGKVNGKVEYCRGHAGDGMVDVANKKCTHHGCNKWPSYGKAGGRAEYCRD
HAEDGMVNVKYKKCTHYGCTKRPSFGEAGDKVEYCRDHADEGMVNVTKPK
CTHQGCTKWPSYGKAGGKAEYCRDHAEDGMVGVKNKKCTHHGCT
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mRNA from alignment at L-elsbetiae_contig1317:2536..4102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1317.2479.1 ID=mRNA_L-elsbetiae_contig1317.2479.1|Name=mRNA_L-elsbetiae_contig1317.2479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1567bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:2536..4102+ (Laminarionema elsbetiae ELsaHSoW15)
CCAAGTGACCCTGCCCAGCTCCTGCATAGTCAGTTGATAGACAAACAATA
TGATATTAGCCCGGGAAATGAGGAGGCGTGTTTGTGCGAGCGCGACGCAC
AGTCCCGCCGGGGGTGCCGCGCAAGCAGCTGGACGCAAGACAGCCATTTG
CCCGAGGCGTTGCGAAAAACATCTACTTGCACCTGGCACCTGGCACGCCT
CGTGGCAACACTTTGCTGGTCTATGCCGCTCTCGACCCTAACCCGAACAC
CACCCTACCCAAGCGAATGACCCCTCTGGAGTGATCGTGTTCGCAAGGGG
CCTCTCTGCTCTGCGCAGCTTTGCCGTCGGTGTTCGGTTGGCGCTTGGGC
AAAAAAACACCCCGACCGTGTTGAGGAGTCTGCGGGGTACGTCTTTGGAC
AGCGATTTGACTGGGCGTGCAGGTTGTGATTTGCACACGCGTCGTGCACA
GAGGGGTTGCCGAGGAGACACCCGTATATCCTCCTGCTGTTAGCGCCAAA
GGGGGCTAAAAGGGGGCTATCGACTAGGGGGAAGGATGCCTCGGAAATGT
ACTCGCCAGGGATGCCCCAAGCAGCCGTCATACGGTAAGGCTGGCGGCAA
GGTAGAGTACTGCCGTGACCATGCCGTAGACGGGATGGTGAATGTCAGGA
ACAAGAAGTGTACCCACCACGGTTGTACCAGGGTTCCGTCATACGGCAAG
GCTGGCGGTAGGGCGGAGTACTGCCGTGACCATGCCGTACACGGGATGGT
GAACGTGAAAAGCAAGAGATGCACGGACCAGGGTTGTACCAAGTGGCCGT
CATACGGCAAGGCTGGCGGCAAGGTGGAGTACTGCCGTGATCATGCCGAG
GATGGGATGGTGGACGTGGCCAACAAGAAATGCACCCACCTCGGTTGTAC
CAAGCAGCCATCATTCGGCAAGGTTGATGGCAGGGCGGAGTTCTGCCGTG
TCCATGCTGAGGACGGGATGGTGGATGTCCAGTGTAAGAGATGCACCCAA
CACGGTTGCACCAAGCGGCCTTCATTCGGCGACGCTGGCGGTAGGATGGT
GTACTGCCGTGCCCATGTCAAGGACGGGATGGTGAACGTGAAAAGCAAGA
GATGCATCCACCACGGTTGTGCCAAGCGGCCATCATACGGCAAGGTTAAC
GGCAAGGTGGAGTACTGCCGTGGTCATGCCGGGGATGGGATGGTGGACGT
GGCCAACAAGAAATGCACGCACCACGGTTGTAACAAGTGGCCGTCATACG
GCAAGGCTGGCGGTAGGGCGGAGTACTGCCGTGATCATGCCGAGGATGGG
ATGGTGAATGTGAAATACAAGAAATGCACCCACTACGGTTGTACCAAGCG
GCCTTCATTCGGCGAGGCTGGCGACAAGGTCGAGTACTGCCGTGATCATG
CCGATGAGGGGATGGTGAACGTGACCAAACCGAAATGCACGCACCAGGGT
TGTACCAAGTGGCCGTCATACGGCAAGGCTGGCGGCAAGGCGGAGTACTG
CCGTGATCATGCCGAGGACGGGATGGTGGGCGTAAAGAACAAGAAATGCA
CCCACCACGGTTGTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1317:2536..4102+

>mRNA_L-elsbetiae_contig1317.2479.1 ID=mRNA_L-elsbetiae_contig1317.2479.1|Name=mRNA_L-elsbetiae_contig1317.2479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig1317:2536..4102+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGGAAATGTACTCGCCAGGGATGCCCCAAGCAGCCGTCATACGG
TAAGGCTGGCGGCAAGGTAGAGTACTGCCGTGACCATGCCGTAGACGGGA
TGGTGAATGTCAGGAACAAGAAGTGTACCCACCACGGTTGTACCAGGGTT
CCGTCATACGGCAAGGCTGGCGGTAGGGCGGAGTACTGCCGTGACCATGC
CGTACACGGGATGGTGAACGTGAAAAGCAAGAGATGCACGGACCAGGGTT
GTACCAAGTGGCCGTCATACGGCAAGGCTGGCGGCAAGGTGGAGTACTGC
CGTGATCATGCCGAGGATGGGATGGTGGACGTGGCCAACAAGAAATGCAC
CCACCTCGGTTGTACCAAGCAGCCATCATTCGGCAAGGTTGATGGCAGGG
CGGAGTTCTGCCGTGTCCATGCTGAGGACGGGATGGTGGATGTCCAGTGT
AAGAGATGCACCCAACACGGTTGCACCAAGCGGCCTTCATTCGGCGACGC
TGGCGGTAGGATGGTGTACTGCCGTGCCCATGTCAAGGACGGGATGGTGA
ACGTGAAAAGCAAGAGATGCATCCACCACGGTTGTGCCAAGCGGCCATCA
TACGGCAAGGTTAACGGCAAGGTGGAGTACTGCCGTGGTCATGCCGGGGA
TGGGATGGTGGACGTGGCCAACAAGAAATGCACGCACCACGGTTGTAACA
AGTGGCCGTCATACGGCAAGGCTGGCGGTAGGGCGGAGTACTGCCGTGAT
CATGCCGAGGATGGGATGGTGAATGTGAAATACAAGAAATGCACCCACTA
CGGTTGTACCAAGCGGCCTTCATTCGGCGAGGCTGGCGACAAGGTCGAGT
ACTGCCGTGATCATGCCGATGAGGGGATGGTGAACGTGACCAAACCGAAA
TGCACGCACCAGGGTTGTACCAAGTGGCCGTCATACGGCAAGGCTGGCGG
CAAGGCGGAGTACTGCCGTGATCATGCCGAGGACGGGATGGTGGGCGTAA
AGAACAAGAAATGCACCCACCACGGTTGTACCATGCCTCGGAAATGTACT
CGCCAGGGATGCCCCAAGCAGCCGTCATACGGTAAGGCTGGCGGCAAGGT
AGAGTACTGCCGTGACCATGCCGTAGACGGGATGGTGAATGTCAGGAACA
AGAAGTGTACCCACCACGGTTGTACCAGGGTTCCGTCATACGGCAAGGCT
GGCGGTAGGGCGGAGTACTGCCGTGACCATGCCGTACACGGGATGGTGAA
CGTGAAAAGCAAGAGATGCACGGACCAGGGTTGTACCAAGTGGCCGTCAT
ACGGCAAGGCTGGCGGCAAGGTGGAGTACTGCCGTGATCATGCCGAGGAT
GGGATGGTGGACGTGGCCAACAAGAAATGCACCCACCTCGGTTGTACCAA
GCAGCCATCATTCGGCAAGGTTGATGGCAGGGCGGAGTTCTGCCGTGTCC
ATGCTGAGGACGGGATGGTGGATGTCCAGTGTAAGAGATGCACCCAACAC
GGTTGCACCAAGCGGCCTTCATTCGGCGACGCTGGCGGTAGGATGGTGTA
CTGCCGTGCCCATGTCAAGGACGGGATGGTGAACGTGAAAAGCAAGAGAT
GCATCCACCACGGTTGTGCCAAGCGGCCATCATACGGCAAGGTTAACGGC
AAGGTGGAGTACTGCCGTGGTCATGCCGGGGATGGGATGGTGGACGTGGC
CAACAAGAAATGCACGCACCACGGTTGTAACAAGTGGCCGTCATACGGCA
AGGCTGGCGGTAGGGCGGAGTACTGCCGTGATCATGCCGAGGATGGGATG
GTGAATGTGAAATACAAGAAATGCACCCACTACGGTTGTACCAAGCGGCC
TTCATTCGGCGAGGCTGGCGACAAGGTCGAGTACTGCCGTGATCATGCCG
ATGAGGGGATGGTGAACGTGACCAAACCGAAATGCACGCACCAGGGTTGT
ACCAAGTGGCCGTCATACGGCAAGGCTGGCGGCAAGGCGGAGTACTGCCG
TGATCATGCCGAGGACGGGATGGTGGGCGTAAAGAACAAGAAATGCACCC
ACCACGGTTGTACC
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