mRNA_L-elsbetiae_contig13169.2478.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13169.2478.1
Unique NamemRNA_L-elsbetiae_contig13169.2478.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13169.2478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13169contigL-elsbetiae_contig13169:929..1531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size603
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.8889892-CDS-L-elsbetiae_contig13169:928..13751622815495.8889892-CDS-L-elsbetiae_contig13169:928..1375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13169 929..1375 +
1691682926.5357342-CDS-L-elsbetiae_contig13169:928..13751691682926.5357342-CDS-L-elsbetiae_contig13169:928..1375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13169 929..1375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.9322336-UTR-L-elsbetiae_contig13169:1375..15311622815495.9322336-UTR-L-elsbetiae_contig13169:1375..1531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13169 1376..1531 +
1691682926.5471263-UTR-L-elsbetiae_contig13169:1375..15311691682926.5471263-UTR-L-elsbetiae_contig13169:1375..1531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13169 1376..1531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13169.2478.1prot_L-elsbetiae_contig13169.2478.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13169 929..1375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13169.2478.1

>prot_L-elsbetiae_contig13169.2478.1 ID=prot_L-elsbetiae_contig13169.2478.1|Name=mRNA_L-elsbetiae_contig13169.2478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
PLPWLLLPLPPPLAAASLSEASGGEEITTSPSSPASPPAAEDAFEKGGLA
PPTPPPPLAPPTPPPPTPLPPSVTPSILLTALLSPPLASATVTPFPFAAA
DRSSPPLFLTLPAAPPVVTAPPLTGVPSGKSANRRPTPLLLPLPFAPR*
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mRNA from alignment at L-elsbetiae_contig13169:929..1531+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13169.2478.1 ID=mRNA_L-elsbetiae_contig13169.2478.1|Name=mRNA_L-elsbetiae_contig13169.2478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=603bp|location=Sequence derived from alignment at L-elsbetiae_contig13169:929..1531+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTTACCCTGGCTGCTACTGCCTCTGCCGCCGCCGTTGGCGGCGGCATC
CTTGTCCGAGGCCAGCGGAGGGGAAGAGATCACCACCTCGCCTTCTTCTC
CTGCGTCGCCGCCTGCCGCCGAAGATGCGTTCGAGAAGGGAGGCTTGGCA
CCGCCGACACCACCGCCGCCACTGGCACCGCCGACACCGCCACCGCCGAC
ACCGCTGCCGCCGTCGGTCACGCCCTCCATACTCCTTACCGCGCTCTTGT
CCCCACCACTAGCGTCGGCGACGGTGACTCCGTTTCCGTTCGCTGCCGCC
GACCGGTCATCGCCGCCGCTATTTCTAACGCTACCGGCAGCGCCGCCGGT
GGTCACGGCACCACCGTTGACGGGTGTCCCCTCTGGCAAGTCCGCTAACC
GTCGCCCAACGCCGCTGCTGCTACCGCTGCCGTTTGCACCGCGGTAGCTG
TTGTGCTCGCCCCCCCCGCCGTTGCTCAAACGACCTCTCCCCCCGAGGTC
ACCGCTGCCGCTGTCGCGATCCCTATCCCTATCCCGACCGCCGCCACCCC
GATCGCTGTCGCGCGAGCGTTGTCGGTCCTTGTCCTTGCCGTCTCGTCTG
CTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13169:929..1531+

>mRNA_L-elsbetiae_contig13169.2478.1 ID=mRNA_L-elsbetiae_contig13169.2478.1|Name=mRNA_L-elsbetiae_contig13169.2478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig13169:929..1531+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTTACCCTGGCTGCTACTGCCTCTGCCGCCGCCGTTGGCGGCGGCATC
CTTGTCCGAGGCCAGCGGAGGGGAAGAGATCACCACCTCGCCTTCTTCTC
CTGCGTCGCCGCCTGCCGCCGAAGATGCGTTCGAGAAGGGAGGCTTGGCA
CCGCCGACACCACCGCCGCCACTGGCACCGCCGACACCGCCACCGCCGAC
ACCGCTGCCGCCGTCGGTCACGCCCTCCATACTCCTTACCGCGCTCTTGT
CCCCACCACTAGCGTCGGCGACGGTGACTCCGTTTCCGTTCGCTGCCGCC
GACCGGTCATCGCCGCCGCTATTTCTAACGCTACCGGCAGCGCCGCCGGT
GGTCACGGCACCACCGTTGACGGGTGTCCCCTCTGGCAAGTCCGCTAACC
GTCGCCCAACGCCGCTGCTGCTACCGCTGCCGTTTGCACCGCGGTAGCCG
TTACCCTGGCTGCTACTGCCTCTGCCGCCGCCGTTGGCGGCGGCATCCTT
GTCCGAGGCCAGCGGAGGGGAAGAGATCACCACCTCGCCTTCTTCTCCTG
CGTCGCCGCCTGCCGCCGAAGATGCGTTCGAGAAGGGAGGCTTGGCACCG
CCGACACCACCGCCGCCACTGGCACCGCCGACACCGCCACCGCCGACACC
GCTGCCGCCGTCGGTCACGCCCTCCATACTCCTTACCGCGCTCTTGTCCC
CACCACTAGCGTCGGCGACGGTGACTCCGTTTCCGTTCGCTGCCGCCGAC
CGGTCATCGCCGCCGCTATTTCTAACGCTACCGGCAGCGCCGCCGGTGGT
CACGGCACCACCGTTGACGGGTGTCCCCTCTGGCAAGTCCGCTAACCGTC
GCCCAACGCCGCTGCTGCTACCGCTGCCGTTTGCACCGCGGTAG
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