mRNA_L-elsbetiae_contig1316.2473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1316.2473.1
Unique NamemRNA_L-elsbetiae_contig1316.2473.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1316.2473.1 vs. uniprot
Match: D8LEH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH6_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 5.060e-64
Identity = 104/126 (82.54%), Postives = 113/126 (89.68%), Query Frame = 2 
Query:   71 VVEKAKVKSIKLMDRLRPPELAGVSLPFRESTLKNGDVVAKRGCGIVLHTRVDGREGNLWLKCRSNQDRGALVDALVPWFETNSPEREELDVQQVPEGPLAVRLARFNAAGVGDVAPRKDTDCVIS 448
            VVEKAKVKSIKLMDRL+P EL  VSLPFRE TL+NGDVVAKRGCGIVLHT V+GREGNLWLKCRSNQDRGALV+ALVPWFETNSP R+EL+VQQVPE P+A +LAR NAAG  DV  RKDTDC+IS
Sbjct:  395 VVEKAKVKSIKLMDRLQPSELLKVSLPFREVTLRNGDVVAKRGCGIVLHTSVEGREGNLWLKCRSNQDRGALVEALVPWFETNSPTRKELNVQQVPESPMARQLARLNAAGGSDVMRRKDTDCLIS 520
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1316.2473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEH6_ECTSI5.060e-6482.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1316contigL-elsbetiae_contig1316:21614..22646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size525
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.481678-CDS-L-elsbetiae_contig1316:21613..219651622815495.481678-CDS-L-elsbetiae_contig1316:21613..21965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 21614..21965 +
1691682926.3518934-CDS-L-elsbetiae_contig1316:21613..219651691682926.3518934-CDS-L-elsbetiae_contig1316:21613..21965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 21614..21965 +
1622815495.4989758-CDS-L-elsbetiae_contig1316:22475..226451622815495.4989758-CDS-L-elsbetiae_contig1316:22475..22645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 22476..22645 +
1691682926.3603737-CDS-L-elsbetiae_contig1316:22475..226451691682926.3603737-CDS-L-elsbetiae_contig1316:22475..22645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 22476..22645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1316.2473.1prot_L-elsbetiae_contig1316.2473.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1316 21614..22645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1316.2473.1

>prot_L-elsbetiae_contig1316.2473.1 ID=prot_L-elsbetiae_contig1316.2473.1|Name=mRNA_L-elsbetiae_contig1316.2473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
FSVATRAPRRGGESDSGGGGGDRGRGKGQGQEHQADGPAAAAGAGGRVAP
LQRVHPQERGRGGQEGLRHRAAHQGRRAGGEPVAQVPLQPGPGGPRRRPR
ALVRDELAREGGAGRAAGAGGPAGGPAGPLQRRGSWRCGPTKGHGLRDFV
RVSIDLSLSHLSFGKPARGFVVTT
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mRNA from alignment at L-elsbetiae_contig1316:21614..22646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1316.2473.1 ID=mRNA_L-elsbetiae_contig1316.2473.1|Name=mRNA_L-elsbetiae_contig1316.2473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1033bp|location=Sequence derived from alignment at L-elsbetiae_contig1316:21614..22646+ (Laminarionema elsbetiae ELsaHSoW15)
TTCTCGGTCGCCACGCGCGCACCCCGGAGGGGTGGCGAGAGCGACAGCGG
CGGGGGCGGGGGCGACAGGGGTCGTGGAAAAGGCCAAGGTCAAGAGCATC
AAGCTGATGGACCGGCTGCGGCCGCCGGAGCTGGCGGGCGTGTCGCTCCC
CTTCAGAGAGTCCACCCTCAAGAACGGGGACGTGGTGGCCAAGAGGGGCT
GCGGCATCGTGCTGCACACCAGGGTCGACGGGCGGGAGGGGAACCTGTGG
CTCAAGTGCCGCTCCAACCAGGACCGGGGGGCCCTCGTCGACGCCCTCGT
GCCCTGGTTCGAGACGAACTCGCCCGAGAGGGAGGAGCTGGACGTGCAGC
AGGTGAGTGAGCCGGGCTGCGCCGGGCCGGGCGTGGGCGCGAGCGGGTGG
GGAGGCGGGCAGGAGGCGGGGAGGCGGGCAGGAGGCGGGGAGGCGGGCAG
GAGGCGGGGAGGCGGGCAGGAGGCGGGGAGGCGGGCGGGGCTGTCTGCTG
TATTTTGTTTTGCTCTCGGCGCGGGTCGGCGCGGGAGGGGGGGGGCAAGA
AGCGACTTGTTTTTTCATTATTTTGTTCGTTTCCTCCGCCGCCGCCGCCG
TTTTTTTTTAGTTTTTTCGCCCCCATTTAAACCTGACACGAACGGCACAG
TATGTAGCGTGCCGCCTGCCTACCTGTAGGCGCGTGTTCTCCTCACACGC
GCCGCTGCATACATACATACATACCTATTGGTGCTCGTTGGCCTCGCTCA
TGGTTTATCCTCCATTGGAAAACCAATCTGTCGTCGTGTCTGCCGGCGGT
TGCTGTTTTCGAAACTTATGTATGTCTATATTTATTTATTTACTTTTTTT
TTTTTTTTTCAGGTGCCGGAGGGCCCGCTGGCGGTCCGGCTGGCCCGCTT
CAACGCCGCGGGAGTTGGCGATGTGGCCCCACGAAAGGACACGGACTGCG
TGATTTCGTGAGAGTTTCGATTGATTTGAGCCTCTCTCATCTTTCTTTTG
GGAAACCAGCTCGCGGGTTCGTGGTTACAACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1316:21614..22646+

>mRNA_L-elsbetiae_contig1316.2473.1 ID=mRNA_L-elsbetiae_contig1316.2473.1|Name=mRNA_L-elsbetiae_contig1316.2473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig1316:21614..22646+ (Laminarionema elsbetiae ELsaHSoW15)
TTCTCGGTCGCCACGCGCGCACCCCGGAGGGGTGGCGAGAGCGACAGCGG
CGGGGGCGGGGGCGACAGGGGTCGTGGAAAAGGCCAAGGTCAAGAGCATC
AAGCTGATGGACCGGCTGCGGCCGCCGGAGCTGGCGGGCGTGTCGCTCCC
CTTCAGAGAGTCCACCCTCAAGAACGGGGACGTGGTGGCCAAGAGGGGCT
GCGGCATCGTGCTGCACACCAGGGTCGACGGGCGGGAGGGGAACCTGTGG
CTCAAGTGCCGCTCCAACCAGGACCGGGGGGCCCTCGTCGACGCCCTCGT
GCCCTGGTTCGAGACGAACTCGCCCGAGAGGGAGGAGCTGGACGTGCAGC
AGTTCTCGGTCGCCACGCGCGCACCCCGGAGGGGTGGCGAGAGCGACAGC
GGCGGGGGCGGGGGCGACAGGGGTCGTGGAAAAGGCCAAGGTCAAGAGCA
TCAAGCTGATGGACCGGCTGCGGCCGCCGGAGCTGGCGGGCGTGTCGCTC
CCCTTCAGAGAGTCCACCCTCAAGAACGGGGACGTGGTGGCCAAGAGGGG
CTGCGGCATCGTGCTGCACACCAGGGTCGACGGGCGGGAGGGGAACCTGT
GGCTCAAGTGCCGCTCCAACCAGGACCGGGGGGCCCTCGTCGACGCCCTC
GTGCCCTGGTTCGAGACGAACTCGCCCGAGAGGGAGGAGCTGGACGTGCA
GCAGGTGCCGGAGGGCCCGCTGGCGGTCCGGCTGGCCCGCTTCAACGCCG
CGGGAGTTGGCGATGTGGCCCCACGAAAGGACACGGACTGCGTGATTTCG
TGAGAGTTTCGATTGATTTGAGCCTCTCTCATCTTTCTTTTGGGAAACCA
GCTCGCGGGTTCGTGGTTACAACGGTGCCGGAGGGCCCGCTGGCGGTCCG
GCTGGCCCGCTTCAACGCCGCGGGAGTTGGCGATGTGGCCCCACGAAAGG
ACACGGACTGCGTGATTTCGTGAGAGTTTCGATTGATTTGAGCCTCTCTC
ATCTTTCTTTTGGGAAACCAGCTCGCGGGTTCGTGGTTACAACG
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