mRNA_L-elsbetiae_contig1316.2471.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1316.2471.1
Unique NamemRNA_L-elsbetiae_contig1316.2471.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.450e-21
Identity = 88/227 (38.77%), Postives = 110/227 (48.46%), Query Frame = 1
Query:  553 LEKAVELEHLAVVRVMIELGVDVNAVAPNGGWTALHFAVGK---IMVDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIVNLGV---VDFLLRSGADETIINNNGETALDTAGAHPE------------RLRTLLVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAERSQIVLATDVFKSSSIGPTGSVLGDEL 1179
            L+ A +     V+R +++ GVDVN      G+T+LH A        +D+LVEAGA VE  D  +  TP    +         E   AL  HGA++  RD  G TPL   A      GV   VD LLR GADET +N +G TA +  G H E            R+R LL +AP DRAWRRRG+L+LC     K + L A  S          S SIG   SV G EL
Sbjct:  160 LDFAAQKGDACVLRAILQHGVDVNR--RTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDD-DDCTP----FLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRRLRAASSSARGIGPRAMSVSIGVRVSVAGGEL 379          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.240e-21
Identity = 92/244 (37.70%), Postives = 115/244 (47.13%), Query Frame = 1
Query:  610 GVDVNAVAPNGGWTALHFAVG---KIMVDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIVNLG---VVDFLLRSGADETIINNNGETALDTAGAHPE----------RLRTLLVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAERSQIVLATDVFKSSSIGPTGSVLGDELASNGWAGVAVWLSG--------LEDGQEGIFRVIVGYL 1269
            G DVNA   N G TAL  A        +D+L EAGA++EA+   NG+TPL++    G    R+    AL+ HGA V  ++    TPLH +A    + G   +VD LLR GADET ++ NG TA D      E          R+R LL  AP DRAWRRRG L+L        ++    R+    A  V K      T S      A   WAGV   L G        + DG   IF  IVGYL
Sbjct:  547 GGDVNAKV-NNGITALRVASAFDKAPAIDVLTEAGANIEAQ--ANGSTPLHVASQEG----RLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKR-----TRSSEEPSRAEIDWAGVVSMLMGDGVDPISLMGDGANLIFEKIVGYL 778          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.110e-20
Identity = 86/227 (37.89%), Postives = 109/227 (48.02%), Query Frame = 1
Query:  553 LEKAVELEHLAVVRVMIELGVDVNAVAPNGGWTALHFAVGK---IMVDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIVNLGV---VDFLLRSGADETIINNNGETALDTAGAH------------PERLRTLLVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAERSQIVLATDVFKSSSIGPTGSVLGDEL 1179
            L+ A +     V+R +++ GVDVN      G+T+LH A        +D+LVEAGA VE  D  +  TP    +         E   AL  HG+++  RD  G TPL   A      GV   VD LLR GADET +N +G TA +  G H             ER+R LL +APVDRAWRRRG L+LC     K + L A  S         +S S G   S  G EL
Sbjct:  111 LDLAAQKGDACVLRAILQHGVDVNR--RTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDD-DDCTP----FLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARRLRAASSNASSNGPRVRSLSTGARISGAGGEL 330          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.920e-19
Identity = 73/198 (36.87%), Postives = 106/198 (53.54%), Query Frame = 1
Query:  562 AVELEHLAVVRVMIELGVDVNAVA-PNGGWTALHFAV---GKIMVDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAG----GIVNLGVVDFLLRSGADETIINNNGET--------ALDTAGAHPERLRTL--LVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAER 1101
            A +L H+ V++  +E GVD ++ A P  GWTALH A        V++L+EAGAD +  +S+ G+   +    +  E    E +R L+ +GAD N  D +G+ PLH  A     G++   VVD LLR GA ET +N +G T        A+    A  ER   L  L  AP DRAWRRRG +++   RS  +++ +  R
Sbjct:  174 ATQLGHVGVIKAFLEHGVDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADV-ESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVME--VVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIAAQRR 368          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: A0A6H5JU40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU40_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.380e-16
Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = 1
Query:  586 VVRVMIELGVDVNAVAPNGGWTALHFAV--GKIMVDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIVNLGVVDFLLRSGADETIINNNGETALDTA---GAHPERLRT---LLVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAE-RSQIVLATDVFKSSSIGPTGSVLGDELA-SNGWAGVAVWLSGLEDGQEGIFRVIVGYL 1269
            + R +++ G DVN +  +    A++ AV  G + V +L++AGA V+  +  +G     L + + +     + V+ L+ HGA+VN +D  G + LH  A    +  +VD LLR GADETI N +  T  D A     H E  R    LL  AP DRAWRRRG +LLC    ++ +L   E R+++   T    +++ G T  V  D  + SNG +  +  ++ L D  +G+FR IV YL
Sbjct:  195 MTRALLQHGADVNEL--DDYEIAINEAVRCGNV-VKLLLKAGALVDGHNDFHGLVLAPL-HAACNFSLSCDVVKVLLGHGANVNLQDSEGTSALHLTAVRFSSR-LVDLLLRHGADETINNGDSSTPADCARLKAGHQEASRPVLRLLGGAPADRAWRRRGRVLLCSTPPQQKRLGPGETRTKMTRVTAGDGAAARGGTSEVGSDAHSNSNGSSDFSSLMARLFDRPQGVFRKIVCYL 427          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 8.520e-16
Identity = 100/307 (32.57%), Postives = 130/307 (42.35%), Query Frame = 1
Query:  517 ADPSLECGDTL---PLEKAVELEHLAVVRVMIELGVDVNA--------------------------------VAPNGGWTALHFAV-----GKIMVDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTR-DRHGNTPLHSIA----GGIVNLGVVDFLLRSGADETIINNNGETALDTAGA-----------HPERLRTLLVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAERSQIVLATDVFKSSSIGPTGSVLGDELASNGWAGVAVWLSGLEDGQEGIFRVIVGYL 1269
            AD ++  G T+   PL  AV   HLA+V  ++E G D +                                      G TALH A+         V MLV+A AD E + SV G TPL+       E  R+  V AL+ + A V  R D  G+TPLH        G+     +D LLR GADET  N  G T LD  GA             +R R LLV AP DR WRRRG L+  V RSR   ++ A R     +            G     ++A N  +GV   L+ LE   E +FR ++G+L
Sbjct:  196 ADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGPAVHMLVKARADTELK-SVGGWTPLHAAA----EHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLA--ASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLV--VLRSRT--IVVAHRCAKGASDSGLSLCQARRNGKGARIDVAGNS-SGVVELLTELE--PEAVFRSVLGFL 488          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.670e-15
Identity = 88/273 (32.23%), Postives = 122/273 (44.69%), Query Frame = 1
Query:  520 DPSLECGDTL---PLEKAVELEHLAVVRVMIELGVDVNAVAPNGGWTALHFAV--GK-IMVDMLVEAGADVEAR----------DSVNGATPLNLQ-YPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIV---NLGVVDFLLRSGADETIINNNGETALD---TAGAHPERLRTLLVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAERSQIVLATDVFKSSSIGPTGSVLGDELASNGWAGVAVWLSGLEDGQEGIFRVIVGYL 1269
            DPS   G +L   PL+ A      A+ R +++ G DV +     G+TALH+A   GK  +++ LV AGAD+EAR          DS  G TPL++  +      PR+     L+  GADVN  D HG TPLH +A       +   +DF                       T  +  E L+ LL  AP DRAWRRRG L+L   R+ ++     E    V+   V +  +    G   G      G   V   + GLE   E +FR IVG++
Sbjct:  230 DPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKS-CDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMAL---LLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXXVVTRSSSAEPLKRLLRRAPADRAWRRRGPLVLSRVRAERE-----EEDSRVVGGKVLRQGAECAGGDASGGRDVGGG---VLARVVGLE--AEEVFRAIVGFV 488          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.580e-15
Identity = 81/263 (30.80%), Postives = 115/263 (43.73%), Query Frame = 1
Query:  637 NGGWTALHFAVGKI---------MVDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIVNLGVVDFLLRSGADETIINNNGET---------------ALDTAG----------AHPERLRTLLVSAPVDRAWRRRGVLLLCVCRSRKDQLLSAERSQIVLATDVFKSSSIGPTGSVLGDELASNG------------------WAGVAVWLSGLEDGQEGIFRVIVGYL 1269
            +GG+TALH  V  I          V +L+EAGADV+A+ + +G     L Y        I  +RAL++ GA+VN RD    TPLH +A    ++  V+FLL  GADE + + +GET                 D  G          A   R+R +L  AP DR+W RR  L+L      K Q+ +   S  +         S G +G  L  E+ S                    W  + V L GLE   + +FR++VG+L
Sbjct:   17 DGGYTALHCCVCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLH-VACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNI---------SSGSSGDGLSAEMVSVNCKDLGGDDKETEDQKTVNWRDLVVRLVGLE--ADVLFRLVVGFL 267          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.030e-15
Identity = 69/185 (37.30%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  577 HLAVVRVMIELGVDVNAVAPNGGWTALHFAV--GKI-MVDMLVEAGADVEARDS------------VNGATPLNLQYPSGDEGPRIETVRALVDHG-ADVNTRDRHGNTPLHSIAGGIVNLGVV------DFLLRSGADETIINNNGETALD---TAGAHPERLRTLLVSAPVDRAWRRRGVLLL 1056
            + A+   ++ +G DV +V  N G++ALH+AV  G+  +VD L+E GADVEAR S            + G TPL+     G+       +  L+  G A+ N +D HG++PLH +    +N  V       D LLRSGADET  + +  T  D   ++  H   L+ LL +AP DRAWRRRG L++
Sbjct:  173 NAAMTSALVGMGADVTSV-DNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGN----YPGMLVLLQKGRANANAQDEHGHSPLHILC---MNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGWLQQLLANAPADRAWRRRGTLVM 349          
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.440e-15
Identity = 151/349 (43.27%), Postives = 190/349 (54.44%), Query Frame = 1
Query:   55 REFLPGAREKLLSLLEHEKGSSAAATASPHELLWSGVLGVVLEGAKAQNDWGLATALVKAGAEFGALDLHAAVEEDQQELAAALLASEASV--DAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGADPSLECGDTLPLEKAVELEHLAVVRVMIELGVDVNAVAPNGGWTALHFAVGKIM---VDMLVEAGADVEARDSVNGATPLNLQYPSGDEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIVNLGVVDFLLRSGADETIINNNGETALDTAGAH---------PERLRTLLVSAPVDRAWRRRGVLLLC 1059
            +E L G  E++L L+          T  PHE+  S  L   LE A A+ D GLA  LV+AGA+ G + LH AV      +A  LL + ASV  D +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       L   D   L+ A   + + ++R++I+ G++VN  A  G  TALH+A        +D+LV AGAD++AR+ ++G+ PL                                       +     ++ VV  LLR GADETI+   G+TA D  G            ER R+LL  AP DRAWRRRG+L+LC
Sbjct:   16 KETLKGEEERVLDLMLD--------TRCPHEM--SEWLAAPLESAVARGDEGLAQKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASVHDDEDDYGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTVRLNEFDMSFLDFAASSQDVEILRMLIDHGMEVNLAAAFG--TALHWAAKANRANAIDVLVGAGADIQARN-MSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVGQRRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLC 351          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1316.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNU3_9PHAE2.450e-2138.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY9_9PHAE6.240e-2137.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI6.110e-2037.89Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FSI6_ECTSI1.920e-1936.87Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JU40_9PHAE2.380e-1634.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLL7_ECTSI8.520e-1632.57Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LH19_ECTSI2.670e-1532.23Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5K6K9_9PHAE3.580e-1530.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCR2_ECTSI4.030e-1537.30Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G137_ECTSI5.440e-1543.27Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1316contigL-elsbetiae_contig1316:10782..13828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog2880.D7G6X8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1988
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1316.2471.1prot_L-elsbetiae_contig1316.2471.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1316 10803..12053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.39936-UTR-L-elsbetiae_contig1316:10781..108021622815495.39936-UTR-L-elsbetiae_contig1316:10781..10802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 10782..10802 +
1691682926.3131034-UTR-L-elsbetiae_contig1316:10781..108021691682926.3131034-UTR-L-elsbetiae_contig1316:10781..10802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 10782..10802 +
1622815495.426336-UTR-L-elsbetiae_contig1316:12053..120581622815495.426336-UTR-L-elsbetiae_contig1316:12053..12058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 12054..12058 +
1691682926.3325224-UTR-L-elsbetiae_contig1316:12053..120581691682926.3325224-UTR-L-elsbetiae_contig1316:12053..12058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 12054..12058 +
1622815495.4372163-UTR-L-elsbetiae_contig1316:13117..138281622815495.4372163-UTR-L-elsbetiae_contig1316:13117..13828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 13118..13828 +
1691682926.3436267-UTR-L-elsbetiae_contig1316:13117..138281691682926.3436267-UTR-L-elsbetiae_contig1316:13117..13828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1316 13118..13828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.4166677-CDS-L-elsbetiae_contig1316:10802..120531622815495.4166677-CDS-L-elsbetiae_contig1316:10802..12053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 10803..12053 +
1691682926.3232932-CDS-L-elsbetiae_contig1316:10802..120531691682926.3232932-CDS-L-elsbetiae_contig1316:10802..12053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1316 10803..12053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1316.2471.1

>prot_L-elsbetiae_contig1316.2471.1 ID=prot_L-elsbetiae_contig1316.2471.1|Name=mRNA_L-elsbetiae_contig1316.2471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=417bp
MASNYAATANQREFLPGAREKLLSLLEHEKGSSAAATASPHELLWSGVLG
VVLEGAKAQNDWGLATALVKAGAEFGALDLHAAVEEDQQELAAALLASEA
SVDAEDEFGETALYKASQQNNAVMAQLLLQKGAKVDTPNEYRWTPLFRAA
AGGFPAVVRVLMASGADPSLECGDTLPLEKAVELEHLAVVRVMIELGVDV
NAVAPNGGWTALHFAVGKIMVDMLVEAGADVEARDSVNGATPLNLQYPSG
DEGPRIETVRALVDHGADVNTRDRHGNTPLHSIAGGIVNLGVVDFLLRSG
ADETIINNNGETALDTAGAHPERLRTLLVSAPVDRAWRRRGVLLLCVCRS
RKDQLLSAERSQIVLATDVFKSSSIGPTGSVLGDELASNGWAGVAVWLSG
LEDGQEGIFRVIVGYL*
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mRNA from alignment at L-elsbetiae_contig1316:10782..13828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1316.2471.1 ID=mRNA_L-elsbetiae_contig1316.2471.1|Name=mRNA_L-elsbetiae_contig1316.2471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3047bp|location=Sequence derived from alignment at L-elsbetiae_contig1316:10782..13828+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAAATACAGCCATACTACCATGGCTAGCAACTATGCCGCTACTGCAAA CCAACGCGAGTTCCTTCCAGGAGCCAGAGAGAAACTATTGTCGCTTCTGG AACACGAAAAAGGCTCCTCAGCAGCAGCAACCGCATCACCTCATGAGCTG CTGTGGTCGGGGGTACTGGGTGTCGTACTCGAGGGCGCTAAGGCACAGAA CGACTGGGGGCTAGCAACGGCTTTGGTGAAGGCAGGGGCAGAGTTCGGAG CTCTGGATCTGCATGCAGCCGTCGAAGAAGACCAACAGGAGCTAGCGGCT GCCCTACTGGCGTCCGAGGCATCTGTCGACGCCGAGGATGAGTTCGGTGA GACCGCCCTCTACAAAGCCTCCCAGCAAAATAATGCAGTGATGGCCCAAC TCCTGCTGCAGAAGGGGGCTAAGGTTGACACGCCTAACGAGTACAGATGG ACGCCGCTCTTCAGGGCGGCCGCGGGCGGTTTCCCCGCCGTGGTGCGAGT TCTCATGGCTTCGGGGGCTGATCCCAGTCTTGAATGCGGTGATACTCTCC CGCTCGAGAAGGCGGTTGAACTTGAGCACCTGGCTGTTGTAAGGGTTATG ATTGAACTCGGGGTGGATGTGAACGCCGTTGCCCCCAACGGCGGTTGGAC AGCCCTCCATTTTGCAGTGGGGAAGATCATGGTCGATATGCTGGTCGAGG CTGGGGCCGACGTCGAAGCTCGCGACAGCGTAAATGGAGCAACACCTCTC AACCTCCAGTATCCATCCGGCGATGAAGGGCCGCGCATCGAGACCGTTCG TGCCCTCGTGGACCATGGTGCTGATGTCAACACCAGGGATCGGCATGGCA ACACACCGCTGCACTCCATTGCTGGCGGAATAGTCAATCTTGGGGTGGTG GACTTTCTATTGAGATCCGGTGCGGACGAAACGATCATCAACAACAATGG CGAAACAGCCTTGGACACCGCGGGCGCACACCCTGAGCGCCTGCGCACGC TACTGGTGAGCGCTCCGGTGGACAGGGCATGGCGTCGACGGGGTGTCTTG CTCCTGTGCGTTTGTCGCTCCCGTAAGGACCAACTGCTAAGCGCGGAGAG ATCACAAATTGTTCTGGCCACCGACGTGTTCAAGTCCAGCAGCATCGGGC CTACTGGCAGCGTTCTGGGCGACGAGTTGGCATCCAATGGCTGGGCGGGT GTAGCGGTGTGGCTGTCGGGGCTTGAGGACGGCCAAGAGGGTATCTTCCG AGTGATCGTGGGTTACTTGTGAACGAGGTGAGACTGCTGCGCGCACGGTG GTATAACTTCAAGGGACCAAGTTGTGTGCTTCGTGCGGAACAACACGTTT TTGGTACATGTTCAATACTGCTGCTGCACAGGAGCTTGTTTTTTCAAGCT GTTACTTTTTGTAGAGCGTGGCGCAAGCAACTGCACGAGCGATATCGTGG TTTTCTGTATGTTCTCGAATCAGATTATTGCTCTTTCATCGAAACCTCGT CTAGTATGTCAGCTCTGCGTATTTTTTGTTTTGTAGCAGCACCCCCGACT TGCTTATCAGACGTCCACCGCCACGCGCGACAGCTGCCCCACCAAATTAT CCTATTTTCTTGGCTTCGGCCGTGCACAAAGATATCGGCGGATTTGAGCA GCCGCCCCACACACGGTGGACCAAACAAACGTATGTACCACCCAAACAAG GTGGTACAGCTGTTGTTGTATGATGGCTGGCCTGCTACATCTAGTGTCAG AGAAAGTGAAGCAATCACGCCACCAAGACTTACAGAGATATGCTCCTAGA CGGCCACAACGTGTTGAACACAGCGTGCTGCGCCCTCTGCTCGGGGAACG ACCATGAGCTCTCCACACAACTCGGAAATCGTCGTTTGGTGCCTGGGGGC AAGGGTGAGCGTCGGTGCCTGTCCTGCTTCCCGTCCATGGTGCTCCCTTC AACCCTCCAATCTCTGCCCCCCGGTCTTTGCTCTCCCGGCCGACTGAAAT GTCTTTGAGTCTTGCGATGGTTAGTCTTTTATCCTGGCCTGTCCCCTAGC ACCTTCTTAGCAGTGGCTTGTGACCGCACGCGCGCCCAACAATAAGCCGA GAAAGACCAAATGCTTTGAGAGGAAGACGGCGGAGCGGCCGCGTTGTTGA ATTGCATCATTTTGTCGTGCCAACAATGCCAGAGAATCCGCCTCGATTGG CTCTCCTCAACCATTGGACAGTTAGACAGGGTGTGTCGTGTCGGTTACGG CGTGTCGTTTTCGTTTGCTTTGGTGCTCACTCTGCTCGTCGTTCGCCCCT TCCCTCGGTGCTCTGCGTCTCTTTCTCCCCCAGCAGGGGGCCCTAGGCGG GGGGAAACCTACACCTTTTATTGGGAGTGGGCTCTCTCGGTCGGCAAATG ATCGCCCCGGCCTTGTGTCAGCGATCTAGATTTTGAGTGGCGGATGTTTC GCAGCTCAGGATGTTGTGGACGTCTGCAACGGTTGGGCGAAAGAAAAACA TTCCTTTGGTCTGCACAGGTTCCTTTTGTTCTTTTTTTTGTGGTGCTGTA CTGCCACGCACGCATCTTGATGCCAGGCTGTTCAAGCTATTGAAAGGCCA TTCCTGTACGGAACCCATGGCTGATTTTTATTTTTTCTTATGATTTTTGT TTTTTTCGTACGGGCCCACATGTATGCAAATGCTCCGACGAGGATCCGAG AAGATTTACAAACAGCGCACCGTCTTCGGTCGCTGCGTAGTAAACGCACT GGTATGTTTTTTCGCCCACCAGTGTTCTGTGTCTATCCTGGGCACAACAG GTACAGTGATAGCTCTCCTTGCTAGTCTCAGCAGGCTCAACAAGACAATG TTGCGGCTATCTTGTGTATCGGCCTGTACTCGTGAGAGGGTAAGATGGTC TCACATGTATGTGGGGTGGGACGAAGATGAGGACGTGTGTGTGGCAAAAC ACACAAAAACAGGCAGGTTGTGTCATTTGTCACATTCTCTTTGTCGTGTT GGTTTATATCTACCGTAAGTTGCTTTGTCGTATCCCCCTTTTTCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1316:10782..13828+

>mRNA_L-elsbetiae_contig1316.2471.1 ID=mRNA_L-elsbetiae_contig1316.2471.1|Name=mRNA_L-elsbetiae_contig1316.2471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2502bp|location=Sequence derived from alignment at L-elsbetiae_contig1316:10782..13828+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAGCAACTATGCCGCTACTGCAAACCAACGCGAGTTCCTTCCAGG
AGCCAGAGAGAAACTATTGTCGCTTCTGGAACACGAAAAAGGCTCCTCAG
CAGCAGCAACCGCATCACCTCATGAGCTGCTGTGGTCGGGGGTACTGGGT
GTCGTACTCGAGGGCGCTAAGGCACAGAACGACTGGGGGCTAGCAACGGC
TTTGGTGAAGGCAGGGGCAGAGTTCGGAGCTCTGGATCTGCATGCAGCCG
TCGAAGAAGACCAACAGGAGCTAGCGGCTGCCCTACTGGCGTCCGAGGCA
TCTGTCGACGCCGAGGATGAGTTCGGTGAGACCGCCCTCTACAAAGCCTC
CCAGCAAAATAATGCAGTGATGGCCCAACTCCTGCTGCAGAAGGGGGCTA
AGGTTGACACGCCTAACGAGTACAGATGGACGCCGCTCTTCAGGGCGGCC
GCGGGCGGTTTCCCCGCCGTGGTGCGAGTTCTCATGGCTTCGGGGGCTGA
TCCCAGTCTTGAATGCGGTGATACTCTCCCGCTCGAGAAGGCGGTTGAAC
TTGAGCACCTGGCTGTTGTAAGGGTTATGATTGAACTCGGGGTGGATGTG
AACGCCGTTGCCCCCAACGGCGGTTGGACAGCCCTCCATTTTGCAGTGGG
GAAGATCATGGTCGATATGCTGGTCGAGGCTGGGGCCGACGTCGAAGCTC
GCGACAGCGTAAATGGAGCAACACCTCTCAACCTCCAGTATCCATCCGGC
GATGAAGGGCCGCGCATCGAGACCGTTCGTGCCCTCGTGGACCATGGTGC
TGATGTCAACACCAGGGATCGGCATGGCAACACACCGCTGCACTCCATTG
CTGGCGGAATAGTCAATCTTGGGGTGGTGGACTTTCTATTGAGATCCGGT
GCGGACGAAACGATCATCAACAACAATGGCGAAACAGCCTTGGACACCGC
GGGCGCACACCCTGAGCGCCTGCGCACGCTACTGGTGAGCGCTCCGGTGG
ACAGGGCATGGCGTCGACGGGGTGTCTTGCTCCTGTGCGTTTGTCGCTCC
CGTAAGGACCAACTGCTAAGCGCGGAGAGATCACAAATTGTTCTGGCCAC
CGACGTGTTCAAGTCCAGCAGCATCGGGCCTACTGGCAGCGTTCTGGGCG
ACGAGTTGGCATCCAATGGCTGGGCGGGTGTAGCGGTGTGGCTGTCGGGG
CTTGAGGACGGCCAAGAGGGTATCTTCCGAGTGATCGTGGGTTACTTGTG
AATGGCTAGCAACTATGCCGCTACTGCAAACCAACGCGAGTTCCTTCCAG
GAGCCAGAGAGAAACTATTGTCGCTTCTGGAACACGAAAAAGGCTCCTCA
GCAGCAGCAACCGCATCACCTCATGAGCTGCTGTGGTCGGGGGTACTGGG
TGTCGTACTCGAGGGCGCTAAGGCACAGAACGACTGGGGGCTAGCAACGG
CTTTGGTGAAGGCAGGGGCAGAGTTCGGAGCTCTGGATCTGCATGCAGCC
GTCGAAGAAGACCAACAGGAGCTAGCGGCTGCCCTACTGGCGTCCGAGGC
ATCTGTCGACGCCGAGGATGAGTTCGGTGAGACCGCCCTCTACAAAGCCT
CCCAGCAAAATAATGCAGTGATGGCCCAACTCCTGCTGCAGAAGGGGGCT
AAGGTTGACACGCCTAACGAGTACAGATGGACGCCGCTCTTCAGGGCGGC
CGCGGGCGGTTTCCCCGCCGTGGTGCGAGTTCTCATGGCTTCGGGGGCTG
ATCCCAGTCTTGAATGCGGTGATACTCTCCCGCTCGAGAAGGCGGTTGAA
CTTGAGCACCTGGCTGTTGTAAGGGTTATGATTGAACTCGGGGTGGATGT
GAACGCCGTTGCCCCCAACGGCGGTTGGACAGCCCTCCATTTTGCAGTGG
GGAAGATCATGGTCGATATGCTGGTCGAGGCTGGGGCCGACGTCGAAGCT
CGCGACAGCGTAAATGGAGCAACACCTCTCAACCTCCAGTATCCATCCGG
CGATGAAGGGCCGCGCATCGAGACCGTTCGTGCCCTCGTGGACCATGGTG
CTGATGTCAACACCAGGGATCGGCATGGCAACACACCGCTGCACTCCATT
GCTGGCGGAATAGTCAATCTTGGGGTGGTGGACTTTCTATTGAGATCCGG
TGCGGACGAAACGATCATCAACAACAATGGCGAAACAGCCTTGGACACCG
CGGGCGCACACCCTGAGCGCCTGCGCACGCTACTGGTGAGCGCTCCGGTG
GACAGGGCATGGCGTCGACGGGGTGTCTTGCTCCTGTGCGTTTGTCGCTC
CCGTAAGGACCAACTGCTAAGCGCGGAGAGATCACAAATTGTTCTGGCCA
CCGACGTGTTCAAGTCCAGCAGCATCGGGCCTACTGGCAGCGTTCTGGGC
GACGAGTTGGCATCCAATGGCTGGGCGGGTGTAGCGGTGTGGCTGTCGGG
GCTTGAGGACGGCCAAGAGGGTATCTTCCGAGTGATCGTGGGTTACTTGT
GA
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