mRNA_L-elsbetiae_contig13157.2467.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A6H5KSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG1_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.260e-14 Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 Query: 46 KGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 KGHSA VHHAEFSP G+LVASASKDRTVRLWTPSARGGS+VL Sbjct: 8 KGHSATVHHAEFSPKGSLVASASKDRTVRLWTPSARGGSSVL 49
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A7L3WV41_9GRUI (POC1B protein (Fragment) n=1 Tax=Atlantisia rogersi TaxID=2478892 RepID=A0A7L3WV41_9GRUI) HSP 1 Score: 59.7 bits (143), Expect = 1.450e-7 Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 Query: 28 TQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 ++A RF GH+A V +FSPDG L+ASAS+DRTVRLW P G S+VL Sbjct: 18 SRAYRFVGHAAAVTGVQFSPDGQLLASASQDRTVRLWIPCIHGESSVL 65
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A8B7IXY5_9AVES (POC1 centriolar protein homolog B isoform X2 n=1 Tax=Apteryx mantelli mantelli TaxID=202946 RepID=A0A8B7IXY5_9AVES) HSP 1 Score: 59.7 bits (143), Expect = 2.330e-7 Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 +++A RF GH V +FSPDG LVASAS+DRTVRLW P G S+VL Sbjct: 8 QSRAFRFVGHKEAVTSVQFSPDGQLVASASQDRTVRLWIPCIHGESSVL 56
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: UPI000907073D (POC1 centriolar protein homolog B isoform X3 n=2 Tax=Crocodylia TaxID=1294634 RepID=UPI000907073D) HSP 1 Score: 59.3 bits (142), Expect = 3.070e-7 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 +++A RF GH V+ +FSPDG L+ASAS+DRTVRLW P G S+VL Sbjct: 8 QSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: UPI000907020F (POC1 centriolar protein homolog B isoform X2 n=5 Tax=Crocodylia TaxID=1294634 RepID=UPI000907020F) HSP 1 Score: 59.3 bits (142), Expect = 3.110e-7 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 +++A RF GH V+ +FSPDG L+ASAS+DRTVRLW P G S+VL Sbjct: 8 QSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A7M4E3B9_CROPO (POC1 centriolar protein B n=8 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4E3B9_CROPO) HSP 1 Score: 59.3 bits (142), Expect = 3.250e-7 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 +++A RF GH V+ +FSPDG L+ASAS+DRTVRLW P G S+VL Sbjct: 8 QSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A091NUI8_APAVI (POC1 centriolar protein B (Fragment) n=1 Tax=Apaloderma vittatum TaxID=57397 RepID=A0A091NUI8_APAVI) HSP 1 Score: 58.9 bits (141), Expect = 4.080e-7 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 K +A +F GH+A V +FSP+G L+ASAS+DRTVRLW P G S+VL Sbjct: 14 KCKAYKFAGHAAAVTSVQFSPEGQLLASASQDRTVRLWIPCIHGESSVL 62
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: UPI00051E1614 (POC1 centriolar protein homolog B isoform X1 n=2 Tax=Struthio camelus australis TaxID=441894 RepID=UPI00051E1614) HSP 1 Score: 58.9 bits (141), Expect = 4.410e-7 Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 +++A RF GH V +FSPDG LVASAS+DRTVRLW P G S+VL Sbjct: 8 QSRAFRFVGHVEAVTSVQFSPDGQLVASASQDRTVRLWIPCIHGESSVL 56
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A8J4UC92_CLAMG (POC1 centriolar protein B (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4UC92_CLAMG) HSP 1 Score: 58.5 bits (140), Expect = 5.830e-7 Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 K++A RF GH V FSP G L+AS S+DRTVRLWTPS +G S VL Sbjct: 8 KSRAFRFIGHQDIVTAVHFSPSGELLASGSRDRTVRLWTPSIKGESTVL 56
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A7K8XTC0_9PICI (POC1B protein (Fragment) n=2 Tax=Piciformes TaxID=9219 RepID=A0A7K8XTC0_9PICI) HSP 1 Score: 58.5 bits (140), Expect = 5.970e-7 Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1 Query: 25 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 171 +++A RF GH V +FSPDG L+ASAS+DRTVRLW P G S+VL Sbjct: 17 QSRAYRFVGHEEAVTSVQFSPDGQLLASASRDRTVRLWIPCIHGESSVL 65 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13157.2467.1 >prot_L-elsbetiae_contig13157.2467.1 ID=prot_L-elsbetiae_contig13157.2467.1|Name=mRNA_L-elsbetiae_contig13157.2467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp LLLLLLLCKTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSAback to top mRNA from alignment at L-elsbetiae_contig13157:1050..4484+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13157.2467.1 ID=mRNA_L-elsbetiae_contig13157.2467.1|Name=mRNA_L-elsbetiae_contig13157.2467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3435bp|location=Sequence derived from alignment at L-elsbetiae_contig13157:1050..4484+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13157:1050..4484+ >mRNA_L-elsbetiae_contig13157.2467.1 ID=mRNA_L-elsbetiae_contig13157.2467.1|Name=mRNA_L-elsbetiae_contig13157.2467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig13157:1050..4484+ (Laminarionema elsbetiae ELsaHSoW15)back to top |