mRNA_L-elsbetiae_contig13144.2464.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13144.2464.1
Unique NamemRNA_L-elsbetiae_contig13144.2464.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13144.2464.1 vs. uniprot
Match: D7FT02_ECTSI (Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT02_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.650e-6
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  112 HIIALIAIKTQYKDETDNAYVAPGATANTSS 204
            HI ALIA+KTQYKDET  AYVAPGATAN SS
Sbjct:  609 HIDALIALKTQYKDETGKAYVAPGATANASS 639
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13144.2464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT02_ECTSI1.650e-683.87Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13144contigL-elsbetiae_contig13144:1986..4990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size272
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13144.2464.1prot_L-elsbetiae_contig13144.2464.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13144 1988..4990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.1481204-CDS-L-elsbetiae_contig13144:1987..20151622815494.1481204-CDS-L-elsbetiae_contig13144:1987..2015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13144 1988..2015 -
1691682925.8754582-CDS-L-elsbetiae_contig13144:1987..20151691682925.8754582-CDS-L-elsbetiae_contig13144:1987..2015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13144 1988..2015 -
1622815494.1587718-CDS-L-elsbetiae_contig13144:3937..41231622815494.1587718-CDS-L-elsbetiae_contig13144:3937..4123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13144 3938..4123 -
1691682925.886033-CDS-L-elsbetiae_contig13144:3937..41231691682925.886033-CDS-L-elsbetiae_contig13144:3937..4123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13144 3938..4123 -
1622815494.1699667-CDS-L-elsbetiae_contig13144:4934..49901622815494.1699667-CDS-L-elsbetiae_contig13144:4934..4990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13144 4935..4990 -
1691682925.8972495-CDS-L-elsbetiae_contig13144:4934..49901691682925.8972495-CDS-L-elsbetiae_contig13144:4934..4990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13144 4935..4990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13144.2464.1

>prot_L-elsbetiae_contig13144.2464.1 ID=prot_L-elsbetiae_contig13144.2464.1|Name=mRNA_L-elsbetiae_contig13144.2464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
VVERNPQPPPQWLPRSSRRGRHPRVEEVQGGPGQPPAHIIALIAIKTQYK
DETDNAYVAPGATANTSSGGGAVPPRSTPRRRLRLWGTMR
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mRNA from alignment at L-elsbetiae_contig13144:1986..4990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13144.2464.1 ID=mRNA_L-elsbetiae_contig13144.2464.1|Name=mRNA_L-elsbetiae_contig13144.2464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3005bp|location=Sequence derived from alignment at L-elsbetiae_contig13144:1986..4990- (Laminarionema elsbetiae ELsaHSoW15)
GTTGTGGAAAGGAACCCCCAGCCTCCGCCGCAGTGGCTGCCAAGGTCGTC
ACGAAGGTGTGACATTTACTTTCGTCTTGAAGGGGGGGGGATACACCTTC
CAACTCAATCGCGGAGCAGAAAATGTCCGCGGGGGGACAGGGGGCTGACA
ATAGTGACGTGACTTGTACGCATGTTAATTTGAACGTTCCATAATCAGCT
CTTTTCTTTTGCTTTGGTTTCCTTCCATATAGCTGTTGCCCTTCTCTCCC
TGGGTCGACTGCCTGTTTTGCGATGCAAAGGTATTGCTCCCGACACTCGA
CAGGCGAGAGGTAAGAAAAAGGGCCATGGCCGAACAATGTGTATGCTTTC
AAATACGCTTTCAACCCCCCAAGATTCAGATTGTGATCGGCCGGAACGGT
CTCGTAAGTGGAATTGTGCACACCACGTGCATTGCCTGCGTCAAAGCACT
CGGTTGGGGGGTGGGGGGTAAACCTCTCAGGTTTTGTGTTGAGCACAAGT
GAAAGCCTCGTCGGCGCGAACAAGTGTAATTCTAATTTCTTGCCGGTTTC
GCTGTATATGATAATTTGGTCACTTCACTTGATGAATGCTCTCTCTTCGC
CGCCTTGTCCCATTTTTTCATGAAGAACTGGCTAGCTTTTTATGTGAGCT
AGTTTTCCTCAATCGCCCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTC
TCCCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTTTCTCTCTTTCCCTCTC
TTTCTCCTTCTCTGTCCTTGTCTTCTCATGTTCCCGGTGACAATATTATA
ACTGTTAATCTGACCCTGAGCCCCCCTCATCTCTCTTGTCTGGTCTTGTC
CTGTTCTCATGCAAAAGAGGACGACACCCGCGAGTCGAAGAAGTCCAAGG
CGGACCAGGCCAGCCTCCTGCCCACATTATTGCCCTCATCGCCATTAAGA
CGCAGTACAAGGACGAGACTGACAATGCTTACGTGGCTCCGGGGGCTACG
GCGAATACTTCGTCGGGAGGGGGGGCGGTGCCGCCAAGAAGCACCCCAAG
AAGGTACGAAATAGTATCTAGTAAATCGTTCTTCAACCGGCCGCAACAAT
AATATATAGATACCCCGCGAGCAAACAAACAACAATCCTAGATGTTACCA
AGTTTTTATTTTGTGCCACTGCTGTAGCCAGGGGTGATGAGGGAGGGGTA
GTGTAGTCCCCCAGGAATGTTCGTGTTTATTTTTCCAACGGGTTGGACGT
AGACTGCAGACGATGGCTAGAAATAAAAACGAACTGCTGCAAACTGCTTC
GTACCCGACGCGCCCACGCGAACGGAACGAAATTGCTTGTTGTGTAACCT
AACGACGAAAAAATGCAAGAATCTAAAAAAAGTAGCATCGAAATGAAGGT
CAGTTCGCGTTTGCGGGTCGCGTGTACTCCAAACTGCACACCAAACCCTG
ACTTTGGAACGCCTTCAGAGGCCACGAGTATGACCCCATGCCATCGGCTG
CAGTTTGTGGTTCATACCGGCCTAAGGCCTCTATCGGGCATGCGTTTTTT
GCCTGACACACAGGATGCAGGCACAAAGACGGATACTTGAACGCACATGC
GTAGATTGTGGGCTATGCGACGTTGGTAGATTGTCAGTTTAGCTCGTGCG
CGGCCAGCAAAGTGCTGAAGGCTCTGTATATTCGATGCCTATAGAGGATT
TGTGTATGACCCCGCAGTGTTGGCCTCTGTTGGGGCAGCAGCTGGTGCAG
TTGCTCGTTCTGACACGATCGCCTATTTGTCTGGTGTGACCCCCCCCCAT
CAAATAAATCCCTGGTCCATGTCCGCTCCAGCTTTCACTTTGGCCGATTA
GTTCATCGGGCGGCGGGAATGCTACGAATTTCTGGCCGTTCAATAATATG
GGGTTATGAGTTTGGCAAATTTCTACCCTTTGCTTTTTTTTTACCCGTAT
GAAGCATCCAGTTTTTATTTTTCAAACAAATCGACCCCCCCCCCCAATAA
AAGTAGAAGAATAACAACCGCAAAACGGTATTATTAGGAGTACCGGGTGG
AGGGACCGGAGGGCCGCGAGTGCAGCATCATTGGCGACTTTATTGTTCTT
GTTTTTCTCACAATAGCATGATCCCTCGAATCCGTTGTTACAGAGTGCAA
GGTGCATACCATCCATACCCCAAGAAGCATGTGGCACAAATTTAGCAGAT
GGACGCAATTGAAGCAGAAACCTGAGACCCACGCGAATGTAACGTGCACT
GCTGCGACGTGTTTGTGGTGCTTGGATATCAGTGAGTACGATCTGTGTGC
CGCCTCAGGGGTTACGTGTGTTTGTGGGTATGTGATTGTGTGCACCCTAC
GGGGAGAGAGAGAGCCCAAAAGGCTCACTGCAACGAATGAGATATACATG
ATGAAGAGGACCGCCGTCCTGGGCTAACGTAGTCCCCAGTCTCCACACCA
ACCGCAGTGCAGTGCGGTGGCGCACTCGAACACGACGCCCCATACGAACC
AGTATGTAGGCGTTTCCTGCGTGCTTTGAATTCTCGTTGCGGTATTTTTG
TTTGCGGAATACGCGGGTTGCAAGAGAACCGGCTATTTATAGTGCGCAGC
TGATGGGAAACGCGGACACGAGAAAAAATATCTCGTATCGTGCAAGGATA
TACCGAGTATATTTTGTACGCCTTATCCTTGCCGAACCCCCCTCCTTTTT
GATTGTGTGGGTGCATTTGTTGATTTGGGGAGAGGCACTCTCGAACTGCT
TTCGGGAGATGAAGGTCTCGCCGGTAATCAGCGCGCTTGGTGTCTAGGGA
TGTTTGTTTACCTATCTACATCGGCCATGTTGAACTTTATCTTTGCGACT
TGTTTTTGTTTTGTCGTGCATATTAAACAAAGAACACATCAAGGTGCCCC
CATAGTCTATCTTCTCTACGGACGCAAATAACATCTCGATCTGTCGGCCC
TTGTTACCCATCCCTCACATCTCAGGCGGCTGCGCCTGTGGGGCACAATG
CGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13144:1986..4990-

>mRNA_L-elsbetiae_contig13144.2464.1 ID=mRNA_L-elsbetiae_contig13144.2464.1|Name=mRNA_L-elsbetiae_contig13144.2464.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig13144:1986..4990- (Laminarionema elsbetiae ELsaHSoW15)
GTTGTGGAAAGGAACCCCCAGCCTCCGCCGCAGTGGCTGCCAAGGTCGTC
ACGAAGGTTGTGGAAAGGAACCCCCAGCCTCCGCCGCAGTGGCTGCCAAG
GTCGTCACGAAGAGGACGACACCCGCGAGTCGAAGAAGTCCAAGGCGGAC
CAGGCCAGCCTCCTGCCCACATTATTGCCCTCATCGCCATTAAGACGCAG
TACAAGGACGAGACTGACAATGCTTACGTGGCTCCGGGGGCTACGGCGAA
TACTTCGTCGGGAGGGGGGGCGGTGCCGCCAAGAAGCACCCCAAGAAGAG
GACGACACCCGCGAGTCGAAGAAGTCCAAGGCGGACCAGGCCAGCCTCCT
GCCCACATTATTGCCCTCATCGCCATTAAGACGCAGTACAAGGACGAGAC
TGACAATGCTTACGTGGCTCCGGGGGCTACGGCGAATACTTCGTCGGGAG
GGGGGGCGGTGCCGCCAAGAAGCACCCCAAGAAGGCGGCTGCGCCTGTGG
GGCACAATGCGGGCGGCTGCGCCTGTGGGGCACAATGCGG
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