mRNA_L-elsbetiae_contig1314.2462.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1314.2462.1
Unique NamemRNA_L-elsbetiae_contig1314.2462.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1314.2462.1 vs. uniprot
Match: D7FGT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT4_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-9
Identity = 117/407 (28.75%), Postives = 170/407 (41.77%), Query Frame = 2 
Query:  128 PRLGPVQNKASAKVQAIP--QPDSQQEQVPPVLIIARKGL---GPGWTPEKSRYASSESEVSETSP---SRPRAVAAVARV--SGGED----------RVSSTLPDASTGRDRALVTDATTGVTAVGGQPAVARSPEKANRTVFSSISDADVSEN---MTGESSGGRLRLDDSATTEVLIRDEDWLEAEGALRRVVNADSDCDSIY----ESFTGKDEENVTVEGEKVLAAIQTQTRAMELLKPG-TQNTS------EKRFTRSFWGGAAAYDRR--PAGRAGSARGSPLAAISDIPCVXXXXXXXXXXXXSSMFADTA--ESLSVRSKVGLFESTAPSLGGEETKLTNT---TGRMARHQRSSKSLPGNVLAHESTILAATSSTALSVAYEHVRLRRSRSFQAPAR 1225
            PR  PV+   S    + P  +PD  +     V +  +       P W PEKS YASSES +SE  P     P  V A   +  +GG+D           V+ TL   +    +    D         G      +PEKA        SDA+ +E      GE     L LD SAT+EV++R ED +EA+GALRR+++ DSDC S+      S  G+      +EG+        Q + +E  KP  TQ         E+  TRS  G + A D    P    G ++    +A + +                   + TA  +S+SVR+K+ +FE TA S  GEE +  ++   T      Q   +SL     A E    A+   +    A E+  L R+ SF + +R
Sbjct:  547 PRAAPVRGGNSEPDPSSPVRKPDKNETPATTVQVTGKPSRLVPRPSWVPEKSGYASSESSLSEGGPMCSKEPETVTAATSMCGAGGDDDRAQQSVAVPTVNQTLHLEAAANGKQQWRDVVARSQGKIGWTTSDSAPEKAXXXXXXXSSDAEQAEREGERRGEKERSGLPLDSSATSEVVVR-EDGVEADGALRRMLDGDSDCGSVLPLQDNSMEGEKRPR-RLEGKHAQGGRILQEQQVERQKPARTQRVGAQVPGGEEGITRSPRGTSEARDSTDGPPDGGGQSKEPAASATTAVGACEVTSSTLGGTTPRDPKSPTALSKSVSVRAKIEMFERTARSAAGEEGRNRSSSLGTPAACHRQPLGRSLSAKASAREWAFSASVDRSQQRSAVENGGLARALSFSSSSR 951
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BLAST of mRNA_L-elsbetiae_contig1314.2462.1 vs. uniprot
Match: A0A6H5K662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K662_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-5
Identity = 77/228 (33.77%), Postives = 105/228 (46.05%), Query Frame = 2 
Query:  128 PRLGPVQNKASAKVQAIP--QPDSQQEQVPPVLIIARKG-LGP--GWTPEKSRYASSESEVSETSP---SRPRAVAAVARVSG-GEDRVSSTLPDASTGRDRALVTDATTGVTAVGGQP----AVARS------------PEKANRTVFSSISDADVSEN---MTGESSGGRLRLDDSATTEVLIRDEDWLEAEGALRRVVNADSDCDSIYESFTGKDEENVTVEGEK 727
            PR  PV+   S    + P  +PD  +     V +  +   L P   W PEKS YASSES +SE  P     P  V A   + G G D   +   +A    ++ L  +A     A  GQ      VARS            PEK         SDA+ +E      GE    RL LD SA +EV++R ED +EA+GALRR+++ DSDC S+         ++ ++EGEK
Sbjct:  550 PRPAPVRGGNSEPDPSSPVREPDKNETPATTVQVTGKPSRLVPRSSWVPEKSGYASSESSLSEGGPMCSKEPETVPAATSMCGAGVDDDRAQQSNAVPTTNQTLHLEA-----AARGQQQWCDVVARSQGKIDWTTSDSAPEKXXXXXXXPSSDAERAEREGVRKGEKERSRLPLDSSAPSEVVVR-EDGVEADGALRRMLDGDSDCGSVIPL------QDYSMEGEK 765
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1314.2462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGT4_ECTSI1.040e-928.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K662_9PHAE1.260e-533.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1314contigL-elsbetiae_contig1314:18946..21055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1628
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1314.2462.1prot_L-elsbetiae_contig1314.2462.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1314 19268..20523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.9580703-UTR-L-elsbetiae_contig1314:18945..192671622815493.9580703-UTR-L-elsbetiae_contig1314:18945..19267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1314 18946..19267 -
1691682925.7555707-UTR-L-elsbetiae_contig1314:18945..192671691682925.7555707-UTR-L-elsbetiae_contig1314:18945..19267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1314 18946..19267 -
1622815494.0021503-UTR-L-elsbetiae_contig1314:20523..210551622815494.0021503-UTR-L-elsbetiae_contig1314:20523..21055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1314 20524..21055 -
1691682925.7817454-UTR-L-elsbetiae_contig1314:20523..210551691682925.7817454-UTR-L-elsbetiae_contig1314:20523..21055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1314 20524..21055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.9704077-CDS-L-elsbetiae_contig1314:19267..199841622815493.9704077-CDS-L-elsbetiae_contig1314:19267..19984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1314 19268..19984 -
1691682925.7644813-CDS-L-elsbetiae_contig1314:19267..199841691682925.7644813-CDS-L-elsbetiae_contig1314:19267..19984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1314 19268..19984 -
1622815493.9882772-CDS-L-elsbetiae_contig1314:20466..205231622815493.9882772-CDS-L-elsbetiae_contig1314:20466..20523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1314 20467..20523 -
1691682925.7728586-CDS-L-elsbetiae_contig1314:20466..205231691682925.7728586-CDS-L-elsbetiae_contig1314:20466..20523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1314 20467..20523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1314.2462.1

>prot_L-elsbetiae_contig1314.2462.1 ID=prot_L-elsbetiae_contig1314.2462.1|Name=mRNA_L-elsbetiae_contig1314.2462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MTGESSGGRLRLDDSATTEVLIRDEDWLEAEGALRRVVNADSDCDSIYES
FTGKDEENVTVEGEKVLAAIQTQTRAMELLKPGTQNTSEKRFTRSFWGGA
AAYDRRPAGRAGSARGSPLAAISDIPCVRGSPLAAASEIPSSMFADTAES
LSVRSKVGLFESTAPSLGGEETKLTNTTGRMARHQRSSKSLPGNVLAHES
TILAATSSTALSVAYEHVRLRRSRSFQAPARASPPPMAMARTDARVTDDE
GWPSRGS*
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mRNA from alignment at L-elsbetiae_contig1314:18946..21055-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1314.2462.1 ID=mRNA_L-elsbetiae_contig1314.2462.1|Name=mRNA_L-elsbetiae_contig1314.2462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2110bp|location=Sequence derived from alignment at L-elsbetiae_contig1314:18946..21055- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGGGCAACGCCGTCGCTCACACCGCCTTCTGCGCTAGAGGATGGCG
GCGGGGCAACACCGTCGCTCACACCGCCTTCTGCGCTAGAGGATGGCAGC
GGGAAATCGCCGGCGTGCCCGCCGGCTCCGCGATTGGGACCGGTGCAGAA
CAAGGCATCAGCCAAAGTACAAGCCATCCCGCAGCCAGATTCACAGCAGG
AGCAGGTCCCGCCTGTACTAATCATCGCACGCAAGGGACTTGGCCCCGGC
TGGACACCCGAGAAAAGCAGGTACGCATCTTCGGAATCGGAAGTTTCCGA
GACTAGTCCATCGCGCCCGAGGGCCGTTGCGGCGGTGGCAAGGGTAAGCG
GCGGTGAAGATCGAGTCTCGTCCACCTTGCCAGACGCATCGACCGGACGT
GACCGAGCCTTGGTCACCGATGCTACCACGGGGGTGACGGCAGTGGGGGG
GCAACCGGCGGTCGCGAGGTCACCAGAAAAGGCCAACCGGACAGTGTTTA
GCTCAATTTCGGACGCCGATGTCAGCGAGAATATGACCGGGGAGAGCAGC
GGGGGTCGGTTGCGCCTGGATGATTCTGCTACGACTGAGGTGACTTGTTC
GGACACTTGGTAAACCTCTGTAAAAATCTCGCATTAAGTATTCTCGCGTG
CAGATTTCACCAGTCCAATTTACAAGTTACGTTTCACCTGCTCGTTTACC
TTGGAGCAGTTTTCCGCCAACCGCAGCTCATCCATACTCGAAGTATCCAC
GTGGGTTTCGCATCTCACCCCCGAACGGTCTGTCTTCACACTTCTTCGGA
AGTACCTTGCCTCCACCAAAAAAAACAAGTACGGCGCCTATCTAAAAGAA
GCATCGATTTGGTGCCCTCATCGTGTCTACTACAACATGCTTTCTTCCGT
AACATGCATTTACGGGCAACAACGAGCAATCTCATATAGATCACTAATGT
GGGTGCTCAAATGAATGTTGGAGACCCACCCGTGAGGCGAGTCGCGGGTT
TTCTTTTTCGTCCGTGGTCTATGTATGTGCGAGTCTCACTATGTTTTCCT
GTCATGATACAAATGTCTCAGGTTTTGATCAGGGACGAGGATTGGCTCGA
GGCCGAGGGGGCGCTTAGGAGAGTTGTAAACGCGGACTCGGACTGCGATT
CGATTTATGAGAGCTTCACAGGAAAAGACGAGGAAAACGTGACAGTAGAG
GGTGAGAAAGTGCTGGCGGCCATTCAGACCCAGACGCGTGCAATGGAGCT
ACTAAAACCCGGCACTCAGAACACCAGCGAAAAGCGCTTCACGCGGAGCT
TTTGGGGCGGCGCGGCTGCGTACGACCGGCGACCAGCTGGCAGAGCGGGC
AGCGCCAGGGGTTCTCCCCTTGCTGCTATTAGCGACATACCCTGCGTCAG
GGGTTCTCCCCTTGCTGCGGCTAGCGAGATACCCTCGTCAATGTTTGCAG
ACACCGCAGAAAGCCTCTCCGTTCGCTCGAAGGTTGGATTGTTTGAAAGC
ACCGCGCCTTCTTTGGGCGGCGAGGAAACGAAGCTGACAAACACCACGGG
CAGGATGGCTCGACACCAAAGGTCAAGCAAATCGCTGCCCGGAAACGTTC
TAGCCCACGAGAGCACCATTTTGGCAGCTACGTCTTCAACGGCGCTGTCG
GTGGCTTATGAACATGTTCGTTTGAGGAGATCCCGGTCCTTCCAAGCCCC
TGCCCGGGCAAGCCCACCCCCCATGGCCATGGCGAGGACTGACGCGCGCG
TGACAGACGACGAGGGTTGGCCTTCGCGAGGCTCATAGCCTAGTGTCATG
GATCACGTTTCTTGTTGTTGAGTTGTGCCCCTGTAAGCTGAGTATCCTCG
CCGATCGACTCAGCTGCGGATACTACATACGTGCGTGCGCGAGCGGGTTG
TGGGCATGAGCAGCAACGATGCGTAGCGCCTCGAGTTCGATTGAACATAT
CGGAGTCCTTCGATCCCAACAACCAAAACGCTTTTTCGGAGTTTAGTCTA
TTGAGCCATTTAGAGAGGCCTTTGACGTCGTAGAGCGAGCCGACAACAGC
GAGAGGGCGGGAAAACAGGGGGCAGGGTAGGCTAGGAACGGGACGCGAGG
AGGAGATGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1314:18946..21055-

>mRNA_L-elsbetiae_contig1314.2462.1 ID=mRNA_L-elsbetiae_contig1314.2462.1|Name=mRNA_L-elsbetiae_contig1314.2462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig1314:18946..21055- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGGGAGAGCAGCGGGGGTCGGTTGCGCCTGGATGATTCTGCTAC
GACTGAGATGACCGGGGAGAGCAGCGGGGGTCGGTTGCGCCTGGATGATT
CTGCTACGACTGAGGTTTTGATCAGGGACGAGGATTGGCTCGAGGCCGAG
GGGGCGCTTAGGAGAGTTGTAAACGCGGACTCGGACTGCGATTCGATTTA
TGAGAGCTTCACAGGAAAAGACGAGGAAAACGTGACAGTAGAGGGTGAGA
AAGTGCTGGCGGCCATTCAGACCCAGACGCGTGCAATGGAGCTACTAAAA
CCCGGCACTCAGAACACCAGCGAAAAGCGCTTCACGCGGAGCTTTTGGGG
CGGCGCGGCTGCGTACGACCGGCGACCAGCTGGCAGAGCGGGCAGCGCCA
GGGGTTCTCCCCTTGCTGCTATTAGCGACATACCCTGCGTCAGGGGTTCT
CCCCTTGCTGCGGCTAGCGAGATACCCTCGTCAATGTTTGCAGACACCGC
AGAAAGCCTCTCCGTTCGCTCGAAGGTTGGATTGTTTGAAAGCACCGCGC
CTTCTTTGGGCGGCGAGGAAACGAAGCTGACAAACACCACGGGCAGGATG
GCTCGACACCAAAGGTCAAGCAAATCGCTGCCCGGAAACGTTCTAGCCCA
CGAGAGCACCATTTTGGCAGCTACGTCTTCAACGGCGCTGTCGGTGGCTT
ATGAACATGTTCGTTTGAGGAGATCCCGGTCCTTCCAAGCCCCTGCCCGG
GCAAGCCCACCCCCCATGGCCATGGCGAGGACTGACGCGCGCGTGACAGA
CGACGAGGGTTGGCCTTCGCGAGGCTCATAGGTTTTGATCAGGGACGAGG
ATTGGCTCGAGGCCGAGGGGGCGCTTAGGAGAGTTGTAAACGCGGACTCG
GACTGCGATTCGATTTATGAGAGCTTCACAGGAAAAGACGAGGAAAACGT
GACAGTAGAGGGTGAGAAAGTGCTGGCGGCCATTCAGACCCAGACGCGTG
CAATGGAGCTACTAAAACCCGGCACTCAGAACACCAGCGAAAAGCGCTTC
ACGCGGAGCTTTTGGGGCGGCGCGGCTGCGTACGACCGGCGACCAGCTGG
CAGAGCGGGCAGCGCCAGGGGTTCTCCCCTTGCTGCTATTAGCGACATAC
CCTGCGTCAGGGGTTCTCCCCTTGCTGCGGCTAGCGAGATACCCTCGTCA
ATGTTTGCAGACACCGCAGAAAGCCTCTCCGTTCGCTCGAAGGTTGGATT
GTTTGAAAGCACCGCGCCTTCTTTGGGCGGCGAGGAAACGAAGCTGACAA
ACACCACGGGCAGGATGGCTCGACACCAAAGGTCAAGCAAATCGCTGCCC
GGAAACGTTCTAGCCCACGAGAGCACCATTTTGGCAGCTACGTCTTCAAC
GGCGCTGTCGGTGGCTTATGAACATGTTCGTTTGAGGAGATCCCGGTCCT
TCCAAGCCCCTGCCCGGGCAAGCCCACCCCCCATGGCCATGGCGAGGACT
GACGCGCGCGTGACAGACGACGAGGGTTGGCCTTCGCGAGGCTCATAG
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