mRNA_L-elsbetiae_contig13138.2460.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13138.2460.1
Unique NamemRNA_L-elsbetiae_contig13138.2460.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13138.2460.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.070e-11
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:   98 SQCGQAGCEKRPTYGLMGSKKREFCSQHAKKGMINVNNKR 217
            SQCG A C KRPTYG+ GSKKREFCSQHA+ GM+NVNNKR
Sbjct:    2 SQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_L-elsbetiae_contig13138.2460.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.720e-10
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:   98 SQCGQAGCEKRPTYGLMGSKKREFCSQHAKKGMINVNNKR 217
            SQCG   C KRPTYG+ GSKKREFCSQHA+ GM+NVNNKR
Sbjct:   62 SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
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BLAST of mRNA_L-elsbetiae_contig13138.2460.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.790e-5
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 2 
Query:   14 GQGSAGKRRAPKARVSSTYRMANTKKLPSQCGQAGCEKRPTYGLMGSKKREFCSQHAKKGMINVNNKR 217
            G G A        ++S+     +  +    C + GC  RP+YG   SKK EFCSQHAK+GM+NV +KR
Sbjct:  218 GSGGAAAAHKTATKLSTPVIARHRGRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKR 285
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BLAST of mRNA_L-elsbetiae_contig13138.2460.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 8.600e-5
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:  104 CGQAGCEKRPTYGLMGSKKREFCSQHAKKGMINVNNKR 217
            C + GC  RP+YG+ GSKK EFCS+H+K GM NV  KR
Sbjct:   31 CQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKR 68
[Close]
BLAST of mRNA_L-elsbetiae_contig13138.2460.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 8.900e-5
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  104 CGQAGCEKRPTYGLMGSKKREFCSQHAKKGMINVNNKR 217
            C + GC K P+YG  GSKK EFC+QHAKKGM+N+ ++R
Sbjct:  109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRR 146
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13138.2460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FI73_ECTSI4.070e-1180.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE2.720e-1077.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW1_ECTSI7.790e-541.18EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FY22_ECTSI8.600e-560.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FIE1_ECTSI8.900e-560.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13138contigL-elsbetiae_contig13138:1227..2346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1021
Cds size1020
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.583206-CDS-L-elsbetiae_contig13138:1226..18201622815493.583206-CDS-L-elsbetiae_contig13138:1226..1820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13138 1227..1820 +
1691682925.5267384-CDS-L-elsbetiae_contig13138:1226..18201691682925.5267384-CDS-L-elsbetiae_contig13138:1226..1820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13138 1227..1820 +
1622815493.5938363-CDS-L-elsbetiae_contig13138:1919..23451622815493.5938363-CDS-L-elsbetiae_contig13138:1919..2345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13138 1920..2345 +
1691682925.535979-CDS-L-elsbetiae_contig13138:1919..23451691682925.535979-CDS-L-elsbetiae_contig13138:1919..2345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13138 1920..2345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13138.2460.1prot_L-elsbetiae_contig13138.2460.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13138 1227..2345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13138.2460.1

>prot_L-elsbetiae_contig13138.2460.1 ID=prot_L-elsbetiae_contig13138.2460.1|Name=mRNA_L-elsbetiae_contig13138.2460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=340bp
VLKVGTGERWKTKSTEGQSQQHVQDGQHKETSEPVWPSGLRKAANLRPHG
LQKEGVLLAARQEGHDQREQQEVHPAELLHDPVLRRGREQEGRVLLPARD
GGDDRCPEQALRQPAGGVVYQRRQRGRREDSRLLFFRACERGGAARQAAQ
QEVRPPRLRQAPLLRPAGSRRRRKRGGVLRSARDGWDSGGGCFAGFGRKA
LLASLPSSCCCCRRRSSSCGGGGGAFVPADDAGVSSGIHRRSLLPLLRKE
QQQASRRRRRPGRLAAGAAVDAVPTSVERQVQRGRELPVPAAGERQVPGR
REPPAVGGALDAAVQTPVDGEVRPGGGRELAAVPTAVERE
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mRNA from alignment at L-elsbetiae_contig13138:1227..2346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13138.2460.1 ID=mRNA_L-elsbetiae_contig13138.2460.1|Name=mRNA_L-elsbetiae_contig13138.2460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1120bp|location=Sequence derived from alignment at L-elsbetiae_contig13138:1227..2346+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTGAAAGTGGGGACAGGGGAGCGCTGGAAAACGAAGAGCACCGAAGG
CCAGAGTCAGCAGCACGTACAGGATGGCCAACACAAAGAAACTTCCGAGC
CAGTGTGGCCAAGCGGGCTGCGAAAAGCGGCCAACTTACGGCCTCATGGG
CTCCAAAAAGAGGGAGTTCTGCTCGCAGCACGCCAAGAAGGGCATGATCA
ACGTGAACAACAAGAGGTGCATCCAGCCGAACTGCTCCACGATCCCGTCC
TTCGCCGTGGCAGGGAGCAAGAAGGCAGAGTTCTGCTCCCAGCACGCGAT
GGAGGGGATGATCGATGTCCGGAGCAAGCGCTCCGGCAGCCAGCGGGGGG
CGTCGTCTACCAACGCCGCCAGCGGGGGCGGCGGGAAGACTCCCGTCTCC
TCTTCTTCCGAGCGTGTGAGCGAGGAGGGGCCGCTAGGCAGGCTGCGCAA
CAAGAGGTGCGGCCGCCGAGGTTGCGGCAAGCGCCCCTCCTACGCCCCGC
CGGGAGCCGGCGGCGGAGAAAACGCGGCGGAGTTCTGCGATCAGCACGCG
ACGGATGGGATTCTGGTGGGGGGTGTTTTGCGGGGTTTGGGCGAGTACAG
GAGCGGGACCGGTGCCGCCGGCGCCGGTAGCAGGGCAGGCGGGAAGGGTG
CCGAGAGGTATAGCGGTGGCGGGCCGTTGGCGGGAGCAAAGAGAAAGCAC
TCCTCGCTTCCCTTCCCTCCTCCTGCTGCTGCTGCCGCCGCCGCTCCTCC
TCCTGCGGCGGCGGCGGCGGCGCTTTCGTACCCGCTGACGACGCCGGAGT
ATCTTCAGGGATCCATCGCCGATCTCTCCTCCCTCTCCTCCGCAAGGAGC
AACAGCAAGCGAGCCGCCGCCGGCGCCGCCCCGGCCGCCTTGCCGCTGGC
GCCGCCGTTGATGCAGTTCCGACCTCCGTCGAACGACAGGTACAGCGGGG
GCGAGAGCTTCCAGTTCCGGCCGCAGGCGAGCGACAGGTACCTGGGAGGC
GAGAGCCCCCCGCAGTCGGCGGCGCCCTTGATGCAGCAGTTCAGACCCCA
GTCGATGGAGAGGTACGCCCTGGGGGGGGGCGAGAGCTCGCAGCAGTTCC
GACCGCAGTCGAGCGAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13138:1227..2346+

>mRNA_L-elsbetiae_contig13138.2460.1 ID=mRNA_L-elsbetiae_contig13138.2460.1|Name=mRNA_L-elsbetiae_contig13138.2460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig13138:1227..2346+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTGAAAGTGGGGACAGGGGAGCGCTGGAAAACGAAGAGCACCGAAGG
CCAGAGTCAGCAGCACGTACAGGATGGCCAACACAAAGAAACTTCCGAGC
CAGTGTGGCCAAGCGGGCTGCGAAAAGCGGCCAACTTACGGCCTCATGGG
CTCCAAAAAGAGGGAGTTCTGCTCGCAGCACGCCAAGAAGGGCATGATCA
ACGTGAACAACAAGAGGTGCATCCAGCCGAACTGCTCCACGATCCCGTCC
TTCGCCGTGGCAGGGAGCAAGAAGGCAGAGTTCTGCTCCCAGCACGCGAT
GGAGGGGATGATCGATGTCCGGAGCAAGCGCTCCGGCAGCCAGCGGGGGG
CGTCGTCTACCAACGCCGCCAGCGGGGGCGGCGGGAAGACTCCCGTCTCC
TCTTCTTCCGAGCGTGTGAGCGAGGAGGGGCCGCTAGGCAGGCTGCGCAA
CAAGAGGTGCGGCCGCCGAGGTTGCGGCAAGCGCCCCTCCTACGCCCCGC
CGGGAGCCGGCGGCGGAGAAAACGCGGCGGAGTTCTGCGATCAGCACGCG
ACGGATGGGATTCTGGTGGGGGGTGTTTTGCGGGGTTTGGGCGAGTGTTG
AAAGTGGGGACAGGGGAGCGCTGGAAAACGAAGAGCACCGAAGGCCAGAG
TCAGCAGCACGTACAGGATGGCCAACACAAAGAAACTTCCGAGCCAGTGT
GGCCAAGCGGGCTGCGAAAAGCGGCCAACTTACGGCCTCATGGGCTCCAA
AAAGAGGGAGTTCTGCTCGCAGCACGCCAAGAAGGGCATGATCAACGTGA
ACAACAAGAGGTGCATCCAGCCGAACTGCTCCACGATCCCGTCCTTCGCC
GTGGCAGGGAGCAAGAAGGCAGAGTTCTGCTCCCAGCACGCGATGGAGGG
GATGATCGATGTCCGGAGCAAGCGCTCCGGCAGCCAGCGGGGGGCGTCGT
CTACCAACGCCGCCAGCGGGGGCGGCGGGAAGACTCCCGTCTCCTCTTCT
TCCGAGCGTGTGAGCGAGGAGGGGCCGCTAGGCAGGCTGCGCAACAAGAG
GTGCGGCCGCCGAGGTTGCGGCAAGCGCCCCTCCTACGCCCCGCCGGGAG
CCGGCGGCGGAGAAAACGCGGCGGAGTTCTGCGATCAGCACGCGACGGAT
GGGATTCTGGTGGGGGGTGTTTTGCGGGGTTTGGGCGAAAAGCACTCCTC
GCTTCCCTTCCCTCCTCCTGCTGCTGCTGCCGCCGCCGCTCCTCCTCCTG
CGGCGGCGGCGGCGGCGCTTTCGTACCCGCTGACGACGCCGGAGTATCTT
CAGGGATCCATCGCCGATCTCTCCTCCCTCTCCTCCGCAAGGAGCAACAG
CAAGCGAGCCGCCGCCGGCGCCGCCCCGGCCGCCTTGCCGCTGGCGCCGC
CGTTGATGCAGTTCCGACCTCCGTCGAACGACAGGTACAGCGGGGGCGAG
AGCTTCCAGTTCCGGCCGCAGGCGAGCGACAGGTACCTGGGAGGCGAGAG
CCCCCCGCAGTCGGCGGCGCCCTTGATGCAGCAGTTCAGACCCCAGTCGA
TGGAGAGGTACGCCCTGGGGGGGGGCGAGAGCTCGCAGCAGTTCCGACCG
CAGTCGAGCGAGAGAAAGCACTCCTCGCTTCCCTTCCCTCCTCCTGCTGC
TGCTGCCGCCGCCGCTCCTCCTCCTGCGGCGGCGGCGGCGGCGCTTTCGT
ACCCGCTGACGACGCCGGAGTATCTTCAGGGATCCATCGCCGATCTCTCC
TCCCTCTCCTCCGCAAGGAGCAACAGCAAGCGAGCCGCCGCCGGCGCCGC
CCCGGCCGCCTTGCCGCTGGCGCCGCCGTTGATGCAGTTCCGACCTCCGT
CGAACGACAGGTACAGCGGGGGCGAGAGCTTCCAGTTCCGGCCGCAGGCG
AGCGACAGGTACCTGGGAGGCGAGAGCCCCCCGCAGTCGGCGGCGCCCTT
GATGCAGCAGTTCAGACCCCAGTCGATGGAGAGGTACGCCCTGGGGGGGG
GCGAGAGCTCGCAGCAGTTCCGACCGCAGTCGAGCGAGAG
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