mRNA_L-elsbetiae_contig13126.2457.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13126.2457.1
Unique NamemRNA_L-elsbetiae_contig13126.2457.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: D7G0D3_ECTSI (Similar to 3-phosphoadenosine 5-phosphosulfate synthase 2 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D3_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.910e-47
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDK THTMTAPDP+R+DDFISISG
Sbjct:  712 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKKTHTMTAPDPSRQDDFISISG 794
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A6H5KXZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 7.020e-47
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDK THTMTAPDP+R DDFISISG
Sbjct:  687 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKKTHTMTAPDPSRPDDFISISG 769
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A835YWJ1_9STRA (3-phosphoadenosine 5-phosphosulfate synthase-like protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ1_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.420e-39
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RSGGAS+FVVGRDPAGMKGS  AQAAPDDDLYD EHGRYVL MSPGV  M+ML+FSQVYYDK THTMTAPDP+R DDFISISG
Sbjct:  663 RSGGASYFVVGRDPAGMKGSALAQAAPDDDLYDPEHGRYVLAMSPGVNGMRMLDFSQVYYDKRTHTMTAPDPSRPDDFISISG 745
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A7S1ZGA0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZGA0_TRICV)

HSP 1 Score: 118 bits (295), Expect = 1.050e-30
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RS GAS+FVVGRDPAGMKGSP+A A PDDDLYD +HGRYVL  SPG+G MKML F +V YD   + M  PD +R +DFISISG
Sbjct:  185 RSAGASWFVVGRDPAGMKGSPDAIAHPDDDLYDGDHGRYVLVNSPGIGDMKMLSFVKVMYDVTDNVMKIPDESRPNDFISISG 267
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A7S0GL45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL45_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.640e-30
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RS GAS+FVVGRDPAGMKGS EA+A  DDDLY+ +HGRYVL  SPG+G M+ L F +V YD   + M  PD TR DDFISISG
Sbjct:    8 RSAGASYFVVGRDPAGMKGSLEAEAHKDDDLYNGDHGRYVLQNSPGIGDMQFLSFVKVMYDITDNVMKLPDETRMDDFISISG 90
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A7S1FVZ2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FVZ2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.370e-29
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RS GAS+FVVGRDPAG+KGS EA A  DDDLYD +HGRYVL MSPG+G MKML F++V YD   +TM  PD  R DDFISISG
Sbjct:  626 RSAGASYFVVGRDPAGLKGSMEAVAHKDDDLYDGDHGRYVLQMSPGIGGMKMLSFTKVMYDIRDNTMKVPDANRMDDFISISG 708
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A7S0TE74_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TE74_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.540e-29
Identity = 58/83 (69.88%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RS GAS+FVVGRDPAGMKGSP A A PDDDLYD  HGRYVL  SPG+G MKML F +V YD   + M  PD  R DDFISISG
Sbjct:  628 RSAGASYFVVGRDPAGMKGSPSAVAHPDDDLYDGNHGRYVLQNSPGIGDMKMLSFVKVMYDVTDNVMKLPDENRMDDFISISG 710
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A7S2E104_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E104_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.750e-29
Identity = 57/83 (68.67%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RS GAS+FVVGRDPAGMKGSP A A PDDDLYD  HGRYVL  SPG+G+MKML F +V YD   + M  PD +R +DFISISG
Sbjct:  681 RSAGASYFVVGRDPAGMKGSPNAVAHPDDDLYDGNHGRYVLQNSPGIGNMKMLSFVKVMYDISDNVMKVPDESRMEDFISISG 763
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A7S4HZ83_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HZ83_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.750e-29
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RS GAS+FVVGRDPAGMKGSP A   PDDDLYD +HGRYVL  SPG+G MKML F +V YD   + M  PD +R DDFISISG
Sbjct:  712 RSAGASYFVVGRDPAGMKGSPNAVGHPDDDLYDGDHGRYVLQNSPGIGDMKMLSFVKVMYDITDNVMKIPDDSRMDDFISISG 794
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BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Match: A0A7S1CT32_9STRA (Inorganic diphosphatase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CT32_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.550e-29
Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:   25 RSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLWMSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG 273
            RS GAS+FVVGRDPAGMKGS  A A PDDDLYD +HGRYVL  SPG+GSMKML F +V YD   + M  PD +R DDFISISG
Sbjct:  329 RSAGASYFVVGRDPAGMKGSELAVAHPDDDLYDGDHGRYVLQNSPGIGSMKMLSFVKVMYDITDNVMKVPDESRMDDFISISG 411
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13126.2457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D3_ECTSI2.910e-4796.39Similar to 3-phosphoadenosine 5-phosphosulfate syn... [more]
A0A6H5KXZ4_9PHAE7.020e-4796.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YWJ1_9STRA1.420e-3985.543-phosphoadenosine 5-phosphosulfate synthase-like ... [more]
A0A7S1ZGA0_TRICV1.050e-3068.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0GL45_9STRA3.640e-3066.27Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1FVZ2_9STRA1.370e-2969.88Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0TE74_9STRA2.540e-2969.88Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2E104_9STRA4.750e-2968.67Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4HZ83_9STRA4.750e-2968.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1CT32_9STRA8.550e-2969.88Inorganic diphosphatase n=1 Tax=Skeletonema marino... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13126contigL-elsbetiae_contig13126:4383..5037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue8.8e-41
Seed eggNOG ortholog2880.D7G0D3
Preferred namePAPSS2
KEGG rclassRC00002,RC00017,RC00078,RC02809,RC02889
KEGG koko:K00860,ko:K00958,ko:K01507,ko:K03103,ko:K13811
KEGG ReactionR00509,R00529,R03434,R04928,R04929,R09532
KEGG Pathwayko00010,ko00190,ko00230,ko00261,ko00450,ko00562,ko00920,ko01100,ko01120,ko01130,map00010,map00190,map00230,map00261,map00450,map00562,map00920,map01100,map01120,map01130
KEGG ModuleM00176,M00596
Hectar predicted targeting categoryother localisation
GOsGO:0000103,GO:0001501,GO:0003674,GO:0003824,GO:0004020,GO:0004779,GO:0004781,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009336,GO:0009611,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032501,GO:0032502,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034035,GO:0034036,GO:0034641,GO:0034654,GO:0042060,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0046983,GO:0048513,GO:0048731,GO:0048856,GO:0050427,GO:0050428,GO:0050817,GO:0050878,GO:0050896,GO:0055086,GO:0060348,GO:0061695,GO:0065007,GO:0065008,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902503,GO:1990234
EggNOG free text desc.3'-phosphoadenosine 5'-phosphosulfate biosynthetic process
EggNOG OGsCOG0221@1,COG0529@1,KOG1626@2759,KOG4238@2759
EC2.7.1.25,2.7.7.4,3.1.3.62,3.1.3.80,3.6.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionsimilar to 3-phosphoadenosine 5-phosphosulfate synthase 2 isoform 2
Ec32 orthologEc-02_000870.1
Exons2
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.1519673-CDS-L-elsbetiae_contig13126:4382..44631622815493.1519673-CDS-L-elsbetiae_contig13126:4382..4463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13126 4383..4463 -
1691682925.4434402-CDS-L-elsbetiae_contig13126:4382..44631691682925.4434402-CDS-L-elsbetiae_contig13126:4382..4463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13126 4383..4463 -
1622815493.32725-CDS-L-elsbetiae_contig13126:4842..50371622815493.32725-CDS-L-elsbetiae_contig13126:4842..5037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13126 4843..5037 -
1691682925.454477-CDS-L-elsbetiae_contig13126:4842..50371691682925.454477-CDS-L-elsbetiae_contig13126:4842..5037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13126 4843..5037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13126.2457.1prot_L-elsbetiae_contig13126.2457.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13126 4383..5037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13126.2457.1

>prot_L-elsbetiae_contig13126.2457.1 ID=prot_L-elsbetiae_contig13126.2457.1|Name=mRNA_L-elsbetiae_contig13126.2457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MINNTSNGRSGGASFFVVGRDPAGMKGSPEAQAAPDDDLYDAEHGRYVLW
MSPGVGSMKMLEFSQVYYDKMTHTMTAPDPTREDDFISISG*
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mRNA from alignment at L-elsbetiae_contig13126:4383..5037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13126.2457.1 ID=mRNA_L-elsbetiae_contig13126.2457.1|Name=mRNA_L-elsbetiae_contig13126.2457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=655bp|location=Sequence derived from alignment at L-elsbetiae_contig13126:4383..5037- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAACAACACCTCAAACGGCAGATCTGGAGGCGCTAGCTTCTTCGT
CGTCGGCCGCGACCCGGCGGGCATGAAGGGCTCCCCGGAGGCGCAGGCCG
CCCCTGACGACGACCTCTACGACGCCGAGCACGGCCGCTACGTGCTGTGG
ATGAGCCCGGGCGTCGGCAGCATGAAGATGCTCGAGTTCAGCCAGGTGAG
ACCCGCTGCTCAATTGTGGTTGCTGTTGTTGATGTTGTGGTGGTGATGGT
GGTGGTGGAAGGGCTTATGGTTGCTTGTGGTGCTGTGGGTGAACCTGCAC
GTGTATGTGTAGCCAGCATCAAGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TGGTTACTCCTGTTTATCTTGTTTTCATTTTTTATGGTGGTGTTCGTGTT
TTTTTTGTGCTGGTGATGGCCTAAGTACGCATCGCAACCCGACGACGCCC
GAATTTAGCCAGCTGTTGTCTGTGGTTCCCCCACCGCTGCTGACTACTGT
ATGTTGACCCCTTCCCCCCCCTCCCACGCCCGAAATCGTGCGTACCTTTT
TGTGTCGCCACGACCGCGGCTAAGGTGTACTACGACAAGATGACGCACAC
GATGACGGCCCCCGATCCGACCCGTGAGGATGACTTCATATCCATCTCTG
GGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13126:4383..5037-

>mRNA_L-elsbetiae_contig13126.2457.1 ID=mRNA_L-elsbetiae_contig13126.2457.1|Name=mRNA_L-elsbetiae_contig13126.2457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig13126:4383..5037- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAACAACACCTCAAACGGCAGATCTGGAGGCGCTAGCTTCTTCGT
CGTCGGCCGCGACCCGGCGGGCATGAAGGGCTCCCCGGAGGCGCAGGCCG
CCCCTGACGACGACCTCTACGACGCCGAGCACGGCCGCTACGTGCTGTGG
ATGAGCCCGGGCGTCGGCAGCATGAAGATGCTCGAGTTCAGCCAGATGAT
AAACAACACCTCAAACGGCAGATCTGGAGGCGCTAGCTTCTTCGTCGTCG
GCCGCGACCCGGCGGGCATGAAGGGCTCCCCGGAGGCGCAGGCCGCCCCT
GACGACGACCTCTACGACGCCGAGCACGGCCGCTACGTGCTGTGGATGAG
CCCGGGCGTCGGCAGCATGAAGATGCTCGAGTTCAGCCAGGTGTACTACG
ACAAGATGACGCACACGATGACGGCCCCCGATCCGACCCGTGAGGATGAC
TTCATATCCATCTCTGGGTAAGTGTACTACGACAAGATGACGCACACGAT
GACGGCCCCCGATCCGACCCGTGAGGATGACTTCATATCCATCTCTGGGT
AA
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