mRNA_L-elsbetiae_contig13123.2455.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: D8LGL0_ECTSI (CRC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGL0_ECTSI) HSP 1 Score: 162 bits (410), Expect = 5.590e-45 Identity = 78/117 (66.67%), Postives = 86/117 (73.50%), Query Frame = 3 Query: 417 QQSNPCTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGATLLAARRNTLHRNPKAFTRALALEN---SALDGAGCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTVGSRG 758 +Q NPCTCKKCRCLKLYCDCFAQSRFCG ACLC C NR + AARR L RNP AF RA +LE S GAGCGCT+S CLKKYCVCFQ ++ CG C CEGC+NTV +RG Sbjct: 196 EQHNPCTCKKCRCLKLYCDCFAQSRFCGSACLCKQCCNRLGAVVVQAARRAVLERNPDAFHRAHSLETRPGSVTSGAGCGCTRSHCLKKYCVCFQKSLLCGAGCKCEGCLNTVENRG 312
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: E1ZQZ2_CHLVA (CRC domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQZ2_CHLVA) HSP 1 Score: 118 bits (295), Expect = 1.610e-26 Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGATLLAARRNTL-HRNPKAFTRALALENSALDGA---GCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTVGSRG 758 C CKK +CLKLYCDCFA +CGPAC C SC N+ + ++AA+R + RNP AF + + + +AL G GC C KS C+KKYC CFQ V CG C CE C NT G G Sbjct: 530 CNCKKSKCLKLYCDCFANGGYCGPACSCSSCANKVENRAMVAAQREAIKQRNPNAFVQKIEAD-AALGGQHRRGCNCKKSHCMKKYCECFQAGVPCGEHCKCESCHNTAGHSG 641
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: A0A3M7KVS9_AUXPR (CRC domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KVS9_AUXPR) HSP 1 Score: 115 bits (289), Expect = 7.590e-26 Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGATLLAARRNT-LHRNPKAFTRALA---LENSALDGAGCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTV 746 C CKK +CLKLYCDCFA + FCGPAC C SC NR+D + +R L RNP AF + +A +E+ GC C KS C+KKYC CFQ + CG C CEGC N V Sbjct: 256 CNCKKSKCLKLYCDCFAGNGFCGPACTCVSCANREDNRGAVQQQREAILIRNPNAFDQKIAAVDVESGVQHRRGCNCKKSGCIKKYCECFQAGIACGEHCKCEGCKNCV 364
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: A0A1D2ADM9_AUXPR (CRC domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2ADM9_AUXPR) HSP 1 Score: 115 bits (289), Expect = 1.000e-25 Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGATLLAARRNT-LHRNPKAFTRALA---LENSALDGAGCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTV 746 C CKK +CLKLYCDCFA + FCGPAC C SC NR+D + +R L RNP AF + +A +E+ GC C KS C+KKYC CFQ + CG C CEGC N V Sbjct: 546 CNCKKSKCLKLYCDCFAGNGFCGPACTCVSCANREDNRGAVQQQREAILIRNPNAFDQKIAAVDVESGVQHRRGCNCKKSGCIKKYCECFQAGIACGEHCKCEGCKNCV 654
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: A0A2P6TDP9_CHLSO (Tesmin TSO1-like CXC 5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TDP9_CHLSO) HSP 1 Score: 115 bits (288), Expect = 1.350e-25 Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGATLLAARRNTL-HRNPKAFTRALALENSALDGA---GCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTVG 749 C CKK +CLKLYCDCFA +CGPAC C +C N+ + + ++ A+R + RNP AF + + + +AL G GC C KS C+KKYC CFQ V CG C CE C NTVG Sbjct: 513 CNCKKSKCLKLYCDCFANGGYCGPACSCMNCANKVENSDMVRAQREAIKQRNPNAFVQKIEAD-AALGGQHRRGCNCKKSHCMKKYCECFQAGVPCGEHCKCESCHNTVG 621
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: A0A087SHD9_AUXPR (Lin-54-like protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SHD9_AUXPR) HSP 1 Score: 102 bits (254), Expect = 1.010e-22 Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGATLLAARRNT-LHRNPKAFTRALA---LENSALDGAGCGCTKSQCLKKYCVCFQMAVRCGRAC 719 C CKK +CLKLYCDCFA + FCGPAC C SC NR+D + +R L RNP AF + +A +E+ GC C KS C+KKYC CFQ + CG C Sbjct: 108 CNCKKSKCLKLYCDCFAGNGFCGPACTCVSCANREDNRGAVQQQREAILIRNPNAFDQKIAAVDVESGVQHRRGCNCKKSGCIKKYCECFQAGIACGEHC 207
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: A0A699ZAC7_HAELA (CRC domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZAC7_HAELA) HSP 1 Score: 99.8 bits (247), Expect = 1.150e-21 Identity = 55/107 (51.40%), Postives = 64/107 (59.81%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNR-QDGATLLAARRNTLHRNPKAFTRALALENSA---LDGAGCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMN 740 C CKK +CLKLYCDCFA FC C C SC N Q A + RR + R+P+AFTR + ++ A GC C +S CLKKYC CFQ AVRCG C C CMN Sbjct: 62 CHCKKSQCLKLYCDCFAAGTFCS-GCACLSCLNGPQHAAQVEEKRRCIMQRDPQAFTRKIQADSQAGSERHKRGCNCKRSHCLKKYCECFQGAVRCGANCKCLDCMN 167
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: A0A7S2PT71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PT71_9STRA) HSP 1 Score: 101 bits (251), Expect = 9.470e-21 Identity = 63/144 (43.75%), Postives = 75/144 (52.08%), Query Frame = 3 Query: 354 VGVGARPPXXXXXXXXXXXEQQQSNPCTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGATLLA-ARRNTLHRNPKAFTRALA--LENSALD-------GAGCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTVGSR 755 VGVG PP E PC CKK +CLKLYCDCFA R+C C C +C N D + + A +T +NP AF ++ L++S L GC C KS CLKKYC CF V CG C CEGC N VGS+ Sbjct: 263 VGVGGTPPGSNTKY-----ETAAHPPCHCKKSKCLKLYCDCFASERYCSD-CKCSNCQNSPDFEDIRSKAIADTRSKNPNAFKPRISKKLQSSGLPHSPPTAHATGCRCKKSACLKKYCECFTAGVVCGGNCKCEGCKNFVGSQ 400
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: Q20CD7_BETVU (Fgenesh protein 45 n=1 Tax=Beta vulgaris TaxID=161934 RepID=Q20CD7_BETVU) HSP 1 Score: 101 bits (251), Expect = 9.970e-21 Identity = 55/126 (43.65%), Postives = 64/126 (50.79%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGA-TLLAARRNTLHRNPKAFT-----------------RALALENSALDGAGCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTVGSR 755 C CKK +CLKLYCDCFA +CG +C C C NR + T+L R+ RNP AF L+ +SA GC C KS CLKKYC C+Q V C C CEGC N G R Sbjct: 489 CNCKKTKCLKLYCDCFAAGFYCGESCACQGCFNRPEYEDTVLETRQQIESRNPLAFAPKVMQTVTASPTTGKVVEKLSTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSEGCRCEGCKNIYGVR 614
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Match: UPI00053FEFDA (protein tesmin/TSO1-like CXC 2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FEFDA) HSP 1 Score: 101 bits (251), Expect = 1.090e-20 Identity = 55/126 (43.65%), Postives = 64/126 (50.79%), Query Frame = 3 Query: 432 CTCKKCRCLKLYCDCFAQSRFCGPACLCHSCHNRQDGA-TLLAARRNTLHRNPKAFT-----------------RALALENSALDGAGCGCTKSQCLKKYCVCFQMAVRCGRACSCEGCMNTVGSR 755 C CKK +CLKLYCDCFA +CG +C C C NR + T+L R+ RNP AF L+ +SA GC C KS CLKKYC C+Q V C C CEGC N G R Sbjct: 462 CNCKKTKCLKLYCDCFAAGFYCGESCACQGCFNRPEYEDTVLETRQQIESRNPLAFAPKVMQTVTASPTTGKVVEKLSTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSEGCRCEGCKNIYGVR 587 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13123.2455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13123.2455.1 >prot_L-elsbetiae_contig13123.2455.1 ID=prot_L-elsbetiae_contig13123.2455.1|Name=mRNA_L-elsbetiae_contig13123.2455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp WARQRERGGGAGSTAAGATAAAAVVAGATAVSDQRPSHSMTRKLGSVGEEback to top mRNA from alignment at L-elsbetiae_contig13123:149..3180- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13123.2455.1 ID=mRNA_L-elsbetiae_contig13123.2455.1|Name=mRNA_L-elsbetiae_contig13123.2455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3032bp|location=Sequence derived from alignment at L-elsbetiae_contig13123:149..3180- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13123:149..3180- >mRNA_L-elsbetiae_contig13123.2455.1 ID=mRNA_L-elsbetiae_contig13123.2455.1|Name=mRNA_L-elsbetiae_contig13123.2455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig13123:149..3180- (Laminarionema elsbetiae ELsaHSoW15)back to top |