mRNA_L-elsbetiae_contig1311.2448.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1311.2448.1
Unique NamemRNA_L-elsbetiae_contig1311.2448.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: D8LNL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL8_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 2.190e-124
Identity = 200/232 (86.21%), Postives = 204/232 (87.93%), Query Frame = 3 
Query:  372 MVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKGWLVP-DGRGVSPLGLNGGGMRHGG--SVGGYWQATGAPGXXXXXGLRDVYGKGQGREVYPDYGRG-GYPY 1055
            MVIRDRQTDAHRGCAFLTYQ+REAGERAV+KFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGR  VAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTM+GATRALVVKFADVKK  TAKGW+VP D RG SPLG NG    HGG  SVGGYWQATGAPG       RDVY KG  REVYPDY    GYPY
Sbjct:    1 MVIRDRQTDAHRGCAFLTYQTREAGERAVDKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGR--VAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMDGATRALVVKFADVKKAQTAKGWMVPPDARGASPLGYNG--RYHGGGTSVGGYWQATGAPGG------RDVYSKG--REVYPDYANHRGYPY 220
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A7S3UU89_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU89_HETAK)

HSP 1 Score: 203 bits (516), Expect = 3.420e-60
Identity = 103/186 (55.38%), Postives = 131/186 (70.43%), Query Frame = 3 
Query:  282 LKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 839
            +KLFVGQ+P+++DE  LRP+FE  GP+  +MVIRD+QT AHR CAFLTY  RE+ E+A+ + H + KLPNA NP+QVRPA+ Q                 +RENKLFVGM+P  A +  L  VF+ FG + E++ +R PDG  KGCAFVKF+ R AA+AAI ALHE+ TMEG  RALVVKFAD K+
Sbjct:   40 IKLFVGQIPRELDEAALRPVFEAYGPVFDLMVIRDKQTGAHRRCAFLTYCHRESAEKAIAELHGQKKLPNAQNPLQVRPAEGQA----------------ERENKLFVGMVPRAAAEGDLRAVFAPFGALREVHVIRQPDGANKGCAFVKFAERRAALAAIAALHERHTMEGGPRALVVKFADNKR 209
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A836CFQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ8_9STRA)

HSP 1 Score: 212 bits (540), Expect = 7.530e-59
Identity = 111/187 (59.36%), Postives = 136/187 (72.73%), Query Frame = 3 
Query:  279 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 839
            PLKLFVGQVPK MDE QLRP+FE+AGPIAH+MVIRDRQT  HRGC F+TYQ+R A E A+E F+N VKLPNA NP+Q+RPADS  G           +A   +ENKLFVGM+P    +  L ++F  +G+ITEIY +R+ DGT KGCAFVK+    +A AAI+ALHE   +EG +R LVVK AD K+
Sbjct:   31 PLKLFVGQVPKHMDEAQLRPIFEKAGPIAHLMVIRDRQTRMHRGCMFITYQTRAAAEAAIEMFNNNVKLPNAQNPLQMRPADSHAG-----------MASAVKENKLFVGMMPARWGEDELRQLFQPYGKITEIYVIRDLDGTSKGCAFVKYEELESANAAIKALHE-AILEGGSRPLVVKLADKKQ 205
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A7R9U3N7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N7_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.110e-58
Identity = 100/194 (51.55%), Postives = 139/194 (71.65%), Query Frame = 3 
Query:  258 EEGTGGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 839
            ++ +G   +KLFVGQ+PKD++E+QLRP+FE+ G I  + VIRDR T AHRGCAFLTY+++E+G+ A+ + HN++ LP AHNP+QV+PA  +                 +RENKLFVGM+P  A D  ++ VF RFG+I EIY +R+ DG+ +GCAF+KF  RS+A+ AI  L++K TMEGA R L+VKFAD K+
Sbjct:  184 DDDSGMGAIKLFVGQIPKDIEEEQLRPIFEEFGEIFELAVIRDRHTGAHRGCAFLTYKTKESGDMAIRELHNRLVLPKAHNPLQVKPAAGRA----------------ERENKLFVGMMPRTATDADVSNVFGRFGDIREIYIIRDQDGSSRGCAFLKFKARSSALTAIRELNDKYTMEGAPRPLIVKFADNKR 361
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A2P4XGI8_9STRA (CUG-BP-and ETR-3-like factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XGI8_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.020e-53
Identity = 98/214 (45.79%), Postives = 137/214 (64.02%), Query Frame = 3 
Query:  279 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKG----------WLVPDGRGVS 887
            P+KLFVGQVP+ M+ED LRP+ E  GP+  +++IRD+ T AHRGCAF +Y +R+A E+AV++ HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + EVF  FG I E+Y +R+P  G  KGCAF+KF  RS+A+AAIE ++   TM+  T  LVVKFAD ++    +           W +P G G++
Sbjct:   28 PVKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEAAIREVFELFGTIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEDVNGNVTMDRGTSPLVVKFADSRRQRLQRARNLAAAANAYWPLPPGAGLA 227
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: H3GY92_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GY92_PHYRM)

HSP 1 Score: 192 bits (488), Expect = 2.930e-53
Identity = 103/235 (43.83%), Postives = 146/235 (62.13%), Query Frame = 3 
Query:  216 AMAALSGEMLYPVSEEGTGGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKG----------WLVPDGRGVS 887
            A AA+ G  LY  S  G    P+KLFVGQVP+ M+ED+LRP+ E  GP+  +++IRD+ T AHRGCAF +Y +R+A ++AV + HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + +VF  FG I E+Y +R+P  G  KGCAF+KF  R++A+AAIE ++   TM+  T  LVVKFAD ++    +           W +P G G++
Sbjct:   11 AHAAVDGSDLYAESPNG----PVKLFVGQVPRTMEEDELRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAADQAVHELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEAAIRDVFELFGAIEEVYILRHPATGQSKGCAFLKFKERTSALAAIEDVNGNVTMDRGTSPLVVKFADSRRQRLQRARNLAAAANAYWPLPPGAGMA 227
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A5D6YER1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YER1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 4.550e-53
Identity = 97/191 (50.79%), Postives = 130/191 (68.06%), Query Frame = 3 
Query:  270 GGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 839
            GG P+KLFVGQVP+ M+ED LRP+ E  GPI  +++IRD+ T AHRGCAF ++ SR+A ERAV + HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + EVF  FG I E+Y +R+P  G  KGCAF+KF  R++A+AAIE ++   TM+  T  LVVKFAD ++
Sbjct:   51 GGGPVKLFVGQVPRTMEEDDLRPVLEAFGPIEDLVIIRDKLTGAHRGCAFASFYSRDAAERAVAELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKSADEAAIREVFELFGAIEEVYILRHPATGQSKGCAFLKFKDRNSALAAIEDVNGNVTMDRGTSPLVVKFADSRR 227
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A8K1CEG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEG0_PYTOL)

HSP 1 Score: 188 bits (477), Expect = 9.620e-52
Identity = 92/188 (48.94%), Postives = 131/188 (69.68%), Query Frame = 3 
Query:  279 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPD-GTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 839
            P+KLFVGQVP+ M+E+ LRP+ E  GP+  +++IRD+ T AHRGCAF ++ +REA E+A+E+ HNKV LPN+ NP+QVRPA+ Q G                +E+KLF+GM+P  AD++ + EVF+ FG I E+Y +R+P  G  KGCAF+K+  R +A+ AI+ ++   TME  T ALVVKFAD ++
Sbjct:   30 PIKLFVGQVPRTMEEEDLRPVLEVYGPLEDLVIIRDKLTGAHRGCAFASFYAREAAEKAIEELHNKVTLPNSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEVAIREVFAPFGAIEEVYILRHPTTGISKGCAFLKYKDRQSALDAIQQVNGTVTMERGTSALVVKFADSRR 203
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: D0NNK0_PHYIT (CUG-BP-and ETR-3-like factor, putative n=17 Tax=Phytophthora TaxID=4783 RepID=D0NNK0_PHYIT)

HSP 1 Score: 187 bits (476), Expect = 1.650e-51
Identity = 97/214 (45.33%), Postives = 137/214 (64.02%), Query Frame = 3 
Query:  279 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKG----------WLVPDGRGVS 887
            P+KLFVGQVP+ M+ED LRP+ E  GP+  +++IRD+ T AHRGCAF +Y +R+A E+AV++ HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + +VF  FG I E+Y +R+P  G  KGCAF+KF  RS+A+AAIE ++   TM+  T  LVVKFAD ++    +           W +P G G++
Sbjct:   31 PVKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEAAIRDVFELFGSIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEEVNGIVTMDRGTSPLVVKFADSRRQRLQRARNLAAATNAYWPLPPGAGLA 230
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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 3.100e-51
Identity = 118/277 (42.60%), Postives = 154/277 (55.60%), Query Frame = 3 
Query:  282 LKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK-THTAKGWL-----VPDGRGVSPLGLNGGGMRH---GGSVGGY-----------WQATGAPGXXXXXGLRDVYGKGQGREVYPDYGRGGYP 1052
            +KLFVGQ+PK M+E+ LRP+FE+ G I  + VIRD+ +  HRGCAFLTY +R + + A+   H + +L    NP+QVRPA+ Q                 ++ENKLFVGM P  A++  +  VF+ +G + EI+ +RN DGT KGCAFVK++TR +A+ AIEALHE+ TM+G  R LVVKFAD K+ T  A G L      P   G  P    GG M H   GG   GY              +G P      G +      QG  VY  YG  GYP
Sbjct:   44 IKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARVSADAAIAALHGQRRLDRGQNPLQVRPAEGQA----------------EQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKRGTQAAAGRLGGLIGSPGRHGSGPHPEAGGWMGHPGAGGQGAGYPYPMPGPPMSPHMMSGMPYGMAYGGGQAPGAPAQGSYVYYPYGAPGYP 304
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNL8_ECTSI2.190e-12486.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UU89_HETAK3.420e-6055.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CFQ8_9STRA7.530e-5959.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U3N7_9STRA3.110e-5851.55Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2P4XGI8_9STRA1.020e-5345.79CUG-BP-and ETR-3-like factor (Fragment) n=1 Tax=Ph... [more]
H3GY92_PHYRM2.930e-5343.83Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6YER1_9STRA4.550e-5350.79Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CEG0_PYTOL9.620e-5248.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0NNK0_PHYIT1.650e-5145.33CUG-BP-and ETR-3-like factor, putative n=17 Tax=Ph... [more]
D7FV60_ECTSI3.100e-5142.60Trinucleotide repeat containing 4, isoform CRA_d n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1311contigL-elsbetiae_contig1311:217..7103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score378.6
Seed ortholog evalue2.5e-102
Seed eggNOG ortholog2880.D8LNL8
KEGG koko:K13207
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of mRNA splicing, via spliceosome
EggNOG OGsKOG0144@1,KOG0146@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons7
Model size1076
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1311.2448.1prot_L-elsbetiae_contig1311.2448.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1311 217..6885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.1140409-CDS-L-elsbetiae_contig1311:216..4981622815492.1140409-CDS-L-elsbetiae_contig1311:216..498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 217..498 -
1691682924.8673027-CDS-L-elsbetiae_contig1311:216..4981691682924.8673027-CDS-L-elsbetiae_contig1311:216..498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 217..498 -
1622815492.1343284-CDS-L-elsbetiae_contig1311:1343..14601622815492.1343284-CDS-L-elsbetiae_contig1311:1343..1460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 1344..1460 -
1691682924.8804612-CDS-L-elsbetiae_contig1311:1343..14601691682924.8804612-CDS-L-elsbetiae_contig1311:1343..1460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 1344..1460 -
1622815492.144654-CDS-L-elsbetiae_contig1311:2220..23481622815492.144654-CDS-L-elsbetiae_contig1311:2220..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 2221..2348 -
1691682924.8904142-CDS-L-elsbetiae_contig1311:2220..23481691682924.8904142-CDS-L-elsbetiae_contig1311:2220..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 2221..2348 -
1622815492.154805-CDS-L-elsbetiae_contig1311:2809..28671622815492.154805-CDS-L-elsbetiae_contig1311:2809..2867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 2810..2867 -
1691682924.9017608-CDS-L-elsbetiae_contig1311:2809..28671691682924.9017608-CDS-L-elsbetiae_contig1311:2809..2867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 2810..2867 -
1622815492.1705668-CDS-L-elsbetiae_contig1311:3529..36121622815492.1705668-CDS-L-elsbetiae_contig1311:3529..3612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 3530..3612 -
1691682924.9111114-CDS-L-elsbetiae_contig1311:3529..36121691682924.9111114-CDS-L-elsbetiae_contig1311:3529..3612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 3530..3612 -
1622815492.18321-CDS-L-elsbetiae_contig1311:6101..62071622815492.18321-CDS-L-elsbetiae_contig1311:6101..6207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 6102..6207 -
1691682924.9288814-CDS-L-elsbetiae_contig1311:6101..62071691682924.9288814-CDS-L-elsbetiae_contig1311:6101..6207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 6102..6207 -
1622815492.193657-CDS-L-elsbetiae_contig1311:6801..68851622815492.193657-CDS-L-elsbetiae_contig1311:6801..6885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 6802..6885 -
1691682924.9446487-CDS-L-elsbetiae_contig1311:6801..68851691682924.9446487-CDS-L-elsbetiae_contig1311:6801..6885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1311 6802..6885 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.207195-UTR-L-elsbetiae_contig1311:6885..71031622815492.207195-UTR-L-elsbetiae_contig1311:6885..7103Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1311 6886..7103 -
1691682924.9558148-UTR-L-elsbetiae_contig1311:6885..71031691682924.9558148-UTR-L-elsbetiae_contig1311:6885..7103Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1311 6886..7103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1311.2448.1

>prot_L-elsbetiae_contig1311.2448.1 ID=prot_L-elsbetiae_contig1311.2448.1|Name=mRNA_L-elsbetiae_contig1311.2448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
MAALSGEMLYPVSEEGTGGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAH
IMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRP
ADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGE
ITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVV
KFADVKKTHTAKGWLVPDGRGVSPLGLNGGGMRHGGSVGGYWQATGAPGG
GGGGGLRDVYGKGQGREVYPDYGRGGYPYHNQQVS*
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mRNA from alignment at L-elsbetiae_contig1311:217..7103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1311.2448.1 ID=mRNA_L-elsbetiae_contig1311.2448.1|Name=mRNA_L-elsbetiae_contig1311.2448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6887bp|location=Sequence derived from alignment at L-elsbetiae_contig1311:217..7103- (Laminarionema elsbetiae ELsaHSoW15)
AGCTGCCGAGGAGAGCTTTTCTTTTGGAAAGAGAGACCTACGCCTGCAAC
CCGACACTTGTGTCAGCATCTACCTTGTTGGCATTGTGCACGCGGGTTTG
CGAAGTTGCAGTTGCGCAAGGCGGCTTGGGCGACGGCAGCTGGTGCGCGT
TCAGGAGAGGAAGCCAACGCTGATACCGCCCGTGTTATTTTTGCGACAGA
GAGCGAGAGAGTTGGGCGATGGCAGCTCTCTCAGGCGAAATGCTTTATCC
GGTCAGCGAGGAAGGCACCGGTGGTACCCCTCTGAAGCTGTTCGTGGGAC
AGGTGTGTGTCTGTGTCTGTGTGTGTGTATTTGTGTGCGAGAGAGGAGCA
GAGAGAGGAGAGAGTCTTTCTTTCCGTGTTGATGCGCGACGACTTTCGGT
ATTTTTTTGTGACAAAAAAAAAGCAAGTTCTTGCCCTTCTCGCGTTTTGA
TCAACGCATTGCACGTGGCCCGTTTGATCGGTGGCGTGCTGCGGCGTGTT
GCAGTTAGGTTTCGGGCGATGCAGCCTTCCGAATCAGGTTGTCGGTGCGT
GCAGTTTCGAGTTTTTCCAAAAAAAAAAGTGCCTCGCAAATGCGTAAAGC
TCCTTGCGTACCCTTGCACGTCCGGCCAACCTCGAAAGAGGCTGCACACA
CGCCCGTCTTCGAGATTCGTGCTTGCGAGGCGCCTGCCAGAGAGTTTCAC
GCCAAGATTTCTGCATCTCCAGCAGCATGTGCATAGCTTTGCCCATTCCC
CATTGCGCAATCGCACTTTGTTACTGCAAGAGGGAGAAAGAGACCGCGGG
CCCGTGACCGAAAAAAAGCAAGTTCTTGCCCTCTCGGCGTTTATCAACGT
GAACGTATTTTGCGACGTGAAAAAACAAACGAACACAACCCCTCAGGTGC
CCAAGGACATGGACGAGGACCAGCTCCGACCGCTGTTCGAGCAGGCTGGG
CCGATTGCTCACATCATGGTGATCCGAGATCGACAAACGGATGCACACCG
CGGTGAGCGAGCAATAGTTCTGGTGTCGTTCAAGCGGCAACAGTTTTGAC
ATCAAACATTTTTGAGAGGGAAGGAGTGAGATTTTTTCAAAGTCTTTCGT
CCGCAAACGTCCCTCCGGCGGGGGTATTTTGCATCATACAGAGAGCAGCA
CACCCCACCCGGGGAAAGCAGAAAAGCCACCCTCAAGAGAACCATACAGA
GGCGCCCCACAGCTCATCTCTTTGTGCCCTATCTCGCTACTTAGCTCTCT
CGTTCGGCTTCCTCGAATTCCTTTTCTGCGTACTTTTTTGGAAGGGATAA
ACAGATAGCATCTGTCCGTCATCATCTCCAACGGAAGCGACTTATTCTTT
CTTATATTTTTTGATGCGACCCATCGTGGGAAGTGACCTCATCTAGATCT
AGATTCTTGACGTGTCGTCTACGCGGGAGGGACTTGGGTCAAGTCCGTCA
TGAGCCATCCCATCCCGTCCCACGCTGTCAATCGACCTGCTGGCGGATGA
AGAAAAACGCTTCGCCAACTACAACAGTAGCGTAGCAGCAGTACAAGCCA
TACCGATAGACAAGGATCGCGGGCAATCCGTCTCCCACATTTTACCGTAC
AAACAGGTGATGGATGTATCTTCCATTCTAGTCACTGAATTTCGTTGCGC
TCGAGAGATACACAGAAGAGGAAGCCCTTTTCCCAGGGGGGTGGTGTGCT
TTGAAAATAGCTACTGTGTAGTGCTCTTACCGAGTTCACTTCGCACAGAA
CGCACCTCTCCCCCTATGTACCTATGTACCATACATATCATCCCTGCGTC
AGTTGCGCGATGATTAGGAATTTGATTGTACATAAGATATGTGGATGTGT
GGTGAGGGTTGAGTGTCTCTTCGATATCGCCAGACATATTTGCGTGCATG
TGATCTGTGGACCTTTGTCACGGTGTGGTGCCTCTGGCACTCTGAAGATC
AAATCGGTCAATCCCTGTGGAATCAAAAGCCGTTTACGATTAAATTACGG
GTAAATATCATTTTTTTCCGAATCTGAAGCATTCTTCTTGATGTTTTCGA
AAATCGTACAACTCGAACCTATAGATAATTCACGTATGTTGTATTCACAT
TACAAACCGTTCCGATCTCTCCACCCAGTACCTCTCAATGTCCGTACTAT
TCCAACACTTGATGCGGTCAATTCCCGTGGTCAGGGTTGGGGTTAGGAGT
AGACAGCAATTGTGGTGCATCTTGTGGTGAGTTAACCAAGAAAGCTTGGC
AGTACAACGTCAGTAGGTGTTAAATCCGTATATGCATCTGTCGTATCTAC
AGCGAATAGCTATGCTGTACACCTCGAGACTATTTGTTTCTGATTTTTGT
TTTCTTTTGTATCATATCGCTCTGCTGACCCTCGGGGTCCTTTTTTATTT
TCTCAGTATACCTTTTTAGGTAAGTTAGCTTGTGACCACGGAAATTGACC
GTGTTGAGTGACAGGATGAGTACAGAGATTGATGTTGAGACAGAAGGAGG
TACTGGATAGAGACGAGACCGGGATGGTTTTTTAATGTGAAGACAACAAC
AACAACAACAACAACAACAACAACACCTATCTGTGTCATGTGTACGCATT
TTATGTATGTAGAATGTAGTCTAAATATATATGACCATGTGTGTATTTTT
ATGCAGGTGTGTAGTCTACATATCTATGTCGTATTTTGTATGGTATTCAT
TAGTTATTTGTGGGATCTTGGATCTTTGATGTGGCAACTGCCAGACAGCA
GCAGTAGTATTGTTTCGAATCTTTGTATATCACACAATAGGCTTTGGGTT
ATACACGCCCGTCTTCAATTTGTAGCTCTCTTCTCGTCCGCCGAGCTGTC
GGCATCTTATATTGTACCTATCTGTTACATGGTGTCTTAGCTTATCTAGA
TCTGAAGGTAAGGGTGTTTTTATGTTAAAAGGAAAAGCTGCCTTGCTTGC
ATGAGAAAGGATATCTATATACATCTTTACGCAGACTTAACTCTATAAAA
GAGTTACATTGTGTGCTTGCTGACGGAGGGGTTGCTGACGAGCAAACGAA
GAAAACCGCTGTGTAGGATGCAGGTGCAAACTGAGCAACACAGCAGCGGG
GTAGACGTCCAAGTAGCAATATTGTACAGGAGGGTAGGTTTAGTTGAGGG
TGACTGCTACTACAGACGTTCAGCAGTCTAATGTACCGTACAAAGGTACG
AAGATTTATGAAACGTTCTTGCTGAATCGACTAGATGCTGGTTCAAACTG
CAATGTACCAAAAAATGCTGGTTAAACTGCAGTGTACCAAATATATATAT
ATATGTATATATATAATGTGCGTTTGCCGCTATGCTGTAGCCGAAGCCGC
CCGTCCGATATGCTGCTGGACCTAAATTTAGCTCAAATTACTGTCATCAT
ATTTATCATTTCGGATCGTCTGTTTTGGCTGGCGTGTTGATTGCCGCATC
GAATTGCATCATCGCATGGTGACGGTGATGGTGATGGTCAGGTTGCGCGT
TCCTGACGTACCAGAGCCGAGAGGCCGGGGAGAGAGCCGTGGAGAAGTTC
CACAACAAGGTCAAGCTGCCCAACGTGAGTGTGTGTGTGTTTTCTTCACA
TTCAAAACCGTTCCGAACTCTCTATCCAGTACACCTCCATGAGTGCCTTG
TAGGTAAATTGTTACATTATTTATTCCATCACCATCAAAGCCGAGCATCG
GTATCATCACATCGCATGACACAACCCCTAGGTGGAAGCACCGCACGTAC
TCGAATCGGTTATGGTACGACAGGTTCAGTAGTCCTATTGATGCGGTGCC
CGTCAGGAACAGATAGCCCGGCTGTGTATAACGACAAGCTAGGTACTGTA
GCCCTGCAATCGCTTATGCTGGTGTGCTGGTGCCAGGTGCCAGGAAGACG
CGGTCTGCCAGTGCTGTGCTGTGCTGTGCTGTGCTGTGGTTCGTATGTTC
GATCGATCGACCTTTGGCACGCATCATGTTGTAGTGTATCGATATGCTGA
CATTCTGTGTCGAAAGGTGCTGCCGGCTTGCCTACAATTACAAAACATCA
CCACACTTATTGCTAGGTTACATAGCGTGTATTGTTTTGGGTTCGCCCGC
CCGCTGACTTTTTTTCTCTAAACACACGTGTAGGTATATACGATCAAAGT
CGAAAACCAGCTCCTCACCTTCTTTTCTTTTCGCCCTCCTCGTCGCTACG
TATCTATGCATCATACATACCTTGTCCTTGTTCTAGGCCCACAACCCTGT
GCAGGTGCGGCCGGCGGACTCGCAGATGGGCGACGACCGCCTTGGTGAGA
TTTGCACAGATGTAGGTACCATATGTACAGGAGTGGCGTGTCACCGTTCG
TGTGTTGAGGTCTTCTAAATTTGCGTCCAAGCACTTTGGTTACAGTGGAT
GGTGATACATGCATGTTGGTGTGAAATTTCCAGGAAATTTCCAGCTGGTG
GTGTATATTTTTATTTTTCTACATGCTGGAGCCGAAGTCTCTCCGTCGTT
CGACCGATATATGTATCGGTGTTTTAGCTCGACCTGGTCGAGACGACCCT
CAATGCCATCGATTGGTCGTGATCGTTCGGAGCGATGCCCGTCTATCCAT
GCGGTGCCGTTTTTGCCGGCTGCAATCTATTTACCGATGATGCCTTTATT
TAACACTTTTGTATTTTGCCGCAATATATTGACTGACCTACACACACACC
TTTCTCTTGCCTCTTTCCTTTATGGCATGGTATGGTATGGTCTATGGTAT
TGTAGGGCCCAATGGGCGTGTCGGTGTCGCCCCGGTGGACCGCGAGAACA
AGCTGTTCGTTGGCATGCTGCCGCACGACGCGGACGACATGACCCTCACC
GAAGTCTTCTCACGCTTCGGAGAAATCACCGAGGTATGTATGATACGATT
TGGGATGCTAAAGGGATGATATGGTATCATATACGATAAAATACGCCATA
TGTATGATGGGTTTCTGTGTATGGTGTATACGAGTGTGATAGATGCCATA
CATACGAACATGCCTATCATATGATAATGTAACGGATACCTGCTGTATTG
TGGAATCTTGGTTTATACTCCTAGGAATATATTGGTGCAACGAGAACCGG
TGGGGCATCGGTTGCTTTTACCTAAGTGGTGTCTCACGAAGCCTGCCCGA
AGGTGAAAGCACCCCGGGCCGGAGCTTTAGTGGTGCCAGGACGTTTTGCC
CGGGTATTTGGACTCGTCAATGACATCGTGCTGCTTTTCTTGAACTGGTT
GTAGGTGTGCTCTTGGTTTATTTGGTTGTGTGTCGGTGTCGGTGTCGGTG
TTTCTTCTCTTTCTTTCATCTCTGGCTCCTGCTGGCTCCCTGCTTTTACA
GGCCGTCTTGAAACTACGCCTCCTGGCCTTGCGCTGTTCCTGTTTTTTCC
GGACCACGCGTTATCCCTCGTGCCACGTGTTGGAGTGCGTTCTGCTTGGC
CTTTTGTTTCGCCCTCTCTACAAGTATTGCAGCTGTGGTTCGTCTTTTCG
CCTGTCTGTATCTTGTATCGTGCTATGTCTACTACGCACGTACATGCATG
CGTCTATCAATCTCTGCCCACCCATGGAAAACCTCACGTCTTGTCCATGT
CCCTGTCCATGTCCATGTCCATGTCCATGTCGATGGTGTTTAGATCTACT
GCATGCGCAATCCGGATGGGACTCCCAAGGGCTGCGCGTTCGTGAAGTTC
TCTACAAGGAGTGCCGCCATAGCCGCGATCGAGGCTCTGCATGAAAAGTG
CACCATGGAAGTGAGTGGCATCACAGCAACGAACCAAAACGATTATGTTG
AATTCTGCGACACTGTATTGTAGCCCTTACAACAACGGCGGAGCGCCCGG
GAAGGGGGGGGGGGGGGGGGGGGGGGCCCTACACCCCACCCCCATCCACT
CAGCACGCGGAGGGGGGCGGATGATGTTGATGTTTTTGGTTAGATTNNNN
NNNNNNAAGACCAACAAAAAAAACAAGATGTTGTTGTACTGGTGAGGCGG
GGCGCGCGCGGAGGGGCGGCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGATAGCTCTAGACGTAGCCCTGTAACCTGTACCT
GCACGGGGTGCTGATGCTGTTGATGCTGTTGTCTGGATTTCGAGATGGAC
ACGCGACGCCTGTCCTTGCCAAACGAAAGCGCTGCCTTGCCCCAGCTTTG
CTTGCGTATCATCGAAAGATACACGACCCTAAGATACACGCACAAAGTAA
AGCGTGAACATACATCATACATTAGGGTTTTCGCTGTACATTGTACTTTC
CGATCAACTGGTGCTCATAGTGCATAGGGGCAGCAACAGCAGCAGCAAGA
GTGTGCAGGCACCTTGTTCTCTTACTTCGTGTCCCGCCCACCAGCCGCCT
GCCTGGCACTAGACTAGACCCGTTGCATTGTTTTCGATGCTTGACTGAAT
TAGTCGGCGAAGTTTCGGCTAGCTACCGTTCTGTCGTGCTCTGGCTGATA
GTGCGCCTAACGTCCCTCCCTTGGCCATGGCATGATGATGATGTTTTCCG
ACTTTTGCACATTGGATAAATACACTACACTGGCACAACGAAACTATCAC
AACAGGGCGCAACGAGGGCGCTGGTGGTGAAGTTCGCCGACGTTAAGAAG
ACGCACACGGCCAAGGGCTGGCTCGTGCCGGATGGGCGCGGGGTCTCTCC
TCTCGGCTTGAACGGCGGGGGCATGCGCCACGGCGGGAGTGTGGGGGGGT
ACTGGCAGGCCACCGGGGCACCCGGAGGCGGCGGGGGTGGGGGGCTTCGT
GACGTGTACGGCAAGGGGCAGGGGAGGGAGGTCTACCCCGACTACGGCCG
GGGGGGGTACCCCTACCATAACCAGCAGGTGAGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1311:217..7103-

>mRNA_L-elsbetiae_contig1311.2448.1 ID=mRNA_L-elsbetiae_contig1311.2448.1|Name=mRNA_L-elsbetiae_contig1311.2448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig1311:217..7103- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCTCTCTCAGGCGAAATGCTTTATCCGGTCAGCGAGGAAGGCAC
CGGTGGTACCCCTCTGAAGCTGTTCGTGGGACAGATGGCAGCTCTCTCAG
GCGAAATGCTTTATCCGGTCAGCGAGGAAGGCACCGGTGGTACCCCTCTG
AAGCTGTTCGTGGGACAGGTGCCCAAGGACATGGACGAGGACCAGCTCCG
ACCGCTGTTCGAGCAGGCTGGGCCGATTGCTCACATCATGGTGATCCGAG
ATCGACAAACGGATGCACACCGCGGTGCCCAAGGACATGGACGAGGACCA
GCTCCGACCGCTGTTCGAGCAGGCTGGGCCGATTGCTCACATCATGGTGA
TCCGAGATCGACAAACGGATGCACACCGCGGTTGCGCGTTCCTGACGTAC
CAGAGCCGAGAGGCCGGGGAGAGAGCCGTGGAGAAGTTCCACAACAAGGT
CAAGCTGCCCAACGTTGCGCGTTCCTGACGTACCAGAGCCGAGAGGCCGG
GGAGAGAGCCGTGGAGAAGTTCCACAACAAGGTCAAGCTGCCCAACGCCC
ACAACCCTGTGCAGGTGCGGCCGGCGGACTCGCAGATGGGCGACGACCGC
CTTGGCCCACAACCCTGTGCAGGTGCGGCCGGCGGACTCGCAGATGGGCG
ACGACCGCCTTGGGCCCAATGGGCGTGTCGGTGTCGCCCCGGTGGACCGC
GAGAACAAGCTGTTCGTTGGCATGCTGCCGCACGACGCGGACGACATGAC
CCTCACCGAAGTCTTCTCACGCTTCGGAGAAATCACCGAGGGCCCAATGG
GCGTGTCGGTGTCGCCCCGGTGGACCGCGAGAACAAGCTGTTCGTTGGCA
TGCTGCCGCACGACGCGGACGACATGACCCTCACCGAAGTCTTCTCACGC
TTCGGAGAAATCACCGAGATCTACTGCATGCGCAATCCGGATGGGACTCC
CAAGGGCTGCGCGTTCGTGAAGTTCTCTACAAGGAGTGCCGCCATAGCCG
CGATCGAGGCTCTGCATGAAAAGTGCACCATGGAAATCTACTGCATGCGC
AATCCGGATGGGACTCCCAAGGGCTGCGCGTTCGTGAAGTTCTCTACAAG
GAGTGCCGCCATAGCCGCGATCGAGGCTCTGCATGAAAAGTGCACCATGG
AAGGCGCAACGAGGGCGCTGGTGGTGAAGTTCGCCGACGTTAAGAAGACG
CACACGGCCAAGGGCTGGCTCGTGCCGGATGGGCGCGGGGTCTCTCCTCT
CGGCTTGAACGGCGGGGGCATGCGCCACGGCGGGAGTGTGGGGGGGTACT
GGCAGGCCACCGGGGCACCCGGAGGCGGCGGGGGTGGGGGGCTTCGTGAC
GTGTACGGCAAGGGGCAGGGGAGGGAGGTCTACCCCGACTACGGCCGGGG
GGGGTACCCCTACCATAACCAGCAGGTGAGCTGAGGCGCAACGAGGGCGC
TGGTGGTGAAGTTCGCCGACGTTAAGAAGACGCACACGGCCAAGGGCTGG
CTCGTGCCGGATGGGCGCGGGGTCTCTCCTCTCGGCTTGAACGGCGGGGG
CATGCGCCACGGCGGGAGTGTGGGGGGGTACTGGCAGGCCACCGGGGCAC
CCGGAGGCGGCGGGGGTGGGGGGCTTCGTGACGTGTACGGCAAGGGGCAG
GGGAGGGAGGTCTACCCCGACTACGGCCGGGGGGGGTACCCCTACCATAA
CCAGCAGGTGAGCTGA
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