mRNA_L-elsbetiae_contig13085.2435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13085.2435.1
Unique NamemRNA_L-elsbetiae_contig13085.2435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13085.2435.1 vs. uniprot
Match: A0A6H5JU58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU58_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.330e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 LSLSHNLVRRTEELLPLASLPLLEALSLEGSPVCGAANYRAHVVSLAPPCLRMLDRREV 177
            LS+SHNLVRRTE+L PL+ L  LE LSLEG+PVCGAANYRAHVVSLA  CL+ LD REV
Sbjct:  125 LSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLASACLKTLDGREV 183
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BLAST of mRNA_L-elsbetiae_contig13085.2435.1 vs. uniprot
Match: D8LLH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.500e-18
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 LSLSHNLVRRTEELLPLASLPLLEALSLEGSPVCGAANYRAHVVSLAPPCLRMLDRREV 177
            LS+SHNLVRRTE+L PL+ L  LE LSLEG+PVCGAANYRAHVVSLA  CL+ LD RE+
Sbjct:  131 LSISHNLVRRTEDLHPLSLLAHLEMLSLEGNPVCGAANYRAHVVSLASACLKTLDGREM 189
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13085.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU58_9PHAE4.330e-1976.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLH8_ECTSI1.500e-1874.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13085contigL-elsbetiae_contig13085:5071..5250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D8LLH8
Preferred nameLRRC72
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1859@1,KOG1859@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.1182547-CDS-L-elsbetiae_contig13085:5070..52501622815490.1182547-CDS-L-elsbetiae_contig13085:5070..5250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 5071..5250 -
1691682923.5764244-CDS-L-elsbetiae_contig13085:5070..52501691682923.5764244-CDS-L-elsbetiae_contig13085:5070..5250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 5071..5250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13085.2435.1prot_L-elsbetiae_contig13085.2435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13085 5071..5250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13085.2435.1

>prot_L-elsbetiae_contig13085.2435.1 ID=prot_L-elsbetiae_contig13085.2435.1|Name=mRNA_L-elsbetiae_contig13085.2435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
LSLSHNLVRRTEELLPLASLPLLEALSLEGSPVCGAANYRAHVVSLAPPC
LRMLDRREVG
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mRNA from alignment at L-elsbetiae_contig13085:5071..5250-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13085.2435.1 ID=mRNA_L-elsbetiae_contig13085.2435.1|Name=mRNA_L-elsbetiae_contig13085.2435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig13085:5071..5250- (Laminarionema elsbetiae ELsaHSoW15)
CTCTCCCTCTCGCACAACCTCGTGCGCCGGACGGAGGAACTCCTCCCGCT
GGCGTCCCTGCCGCTCCTGGAGGCGCTCTCCTTGGAGGGGAGCCCCGTGT
GCGGCGCGGCCAACTACCGGGCGCACGTGGTCTCGCTGGCGCCCCCGTGC
CTCCGGATGCTGGACCGCAGAGAGGTAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13085:5071..5250-

>mRNA_L-elsbetiae_contig13085.2435.1 ID=mRNA_L-elsbetiae_contig13085.2435.1|Name=mRNA_L-elsbetiae_contig13085.2435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig13085:5071..5250- (Laminarionema elsbetiae ELsaHSoW15)
CTCTCCCTCTCGCACAACCTCGTGCGCCGGACGGAGGAACTCCTCCCGCT
GGCGTCCCTGCCGCTCCTGGAGGCGCTCTCCTTGGAGGGGAGCCCCGTGT
GCGGCGCGGCCAACTACCGGGCGCACGTGGTCTCGCTGGCGCCCCCGTGC
CTCCGGATGCTGGACCGCAGAGAGGTAGGTCTCTCCCTCTCGCACAACCT
CGTGCGCCGGACGGAGGAACTCCTCCCGCTGGCGTCCCTGCCGCTCCTGG
AGGCGCTCTCCTTGGAGGGGAGCCCCGTGTGCGGCGCGGCCAACTACCGG
GCGCACGTGGTCTCGCTGGCGCCCCCGTGCCTCCGGATGCTGGACCGCAG
AGAGGTAGGT
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