mRNA_L-elsbetiae_contig13085.2434.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13085.2434.1
Unique NamemRNA_L-elsbetiae_contig13085.2434.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13085.2434.1 vs. uniprot
Match: A0A6H5JU58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU58_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 4.050e-36
Identity = 78/123 (63.41%), Postives = 90/123 (73.17%), Query Frame = 1 
Query:  211 GVFAEVVASRRATGQRTHELTDGTAATLDSPATRVWAQVLGEVQRRTEGNENGIVLRCEGVRRREAERFRHASAQTTAFLRDLAASVGCSDNHWSVLPCAPAXXXXXAVRRPTTAGGAGGARR 579
            G  A+VV SRRA GQRT+EL +   ATL+SP TR+W QVLGEVQRRTEG  + +VLRCE VRRREAERFRH S QT  FL DLAA+VGCSDN W+V PC  A     AV+R T +   GGA+R
Sbjct:  348 GDQADVVTSRRAAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVSDVVLRCESVRRREAERFRHVSGQTNTFLHDLAAAVGCSDNQWAVPPCKAA-----AVQRTTGSSAGGGAQR 465
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BLAST of mRNA_L-elsbetiae_contig13085.2434.1 vs. uniprot
Match: D8LLH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH8_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.380e-35
Identity = 78/123 (63.41%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:  211 GVFAEVVASRRATGQRTHELTDGTAATLDSPATRVWAQVLGEVQRRTEGNENGIVLRCEGVRRREAERFRHASAQTTAFLRDLAASVGCSDNHWSVLPCAPAXXXXXAVRRPTTAGGAGGARR 579
            G  A+VV SRRA GQRT+EL +   ATL+SP TR+W QVLGEVQRRTEG  + +VLRCE VRRREAERFRH S QT  FL+DLAA+VGCSDN W+V PC        AV+R T A   GGA R
Sbjct:  264 GDQADVVNSRRAAGQRTNELLESAVATLNSPGTRMWVQVLGEVQRRTEGKVSDVVLRCESVRRREAERFRHVSGQTNTFLQDLAAAVGCSDNQWAVPPC-----KARAVQRTTGASAGGGAPR 381
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13085.2434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU58_9PHAE4.050e-3663.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLH8_ECTSI1.380e-3563.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13085contigL-elsbetiae_contig13085:2115..4387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue4.3e-37
Seed eggNOG ortholog2880.D8LLH8
Preferred nameLRRC72
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1859@1,KOG1859@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons4
Model size581
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13085.2434.1prot_L-elsbetiae_contig13085.2434.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13085 2115..4387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.0334165-CDS-L-elsbetiae_contig13085:2114..23571622815490.0334165-CDS-L-elsbetiae_contig13085:2114..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 2115..2357 -
1691682923.5362666-CDS-L-elsbetiae_contig13085:2114..23571691682923.5362666-CDS-L-elsbetiae_contig13085:2114..2357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 2115..2357 -
1622815490.050411-CDS-L-elsbetiae_contig13085:2902..30181622815490.050411-CDS-L-elsbetiae_contig13085:2902..3018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 2903..3018 -
1691682923.547902-CDS-L-elsbetiae_contig13085:2902..30181691682923.547902-CDS-L-elsbetiae_contig13085:2902..3018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 2903..3018 -
1622815490.0680523-CDS-L-elsbetiae_contig13085:3687..37871622815490.0680523-CDS-L-elsbetiae_contig13085:3687..3787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 3688..3787 -
1691682923.557025-CDS-L-elsbetiae_contig13085:3687..37871691682923.557025-CDS-L-elsbetiae_contig13085:3687..3787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 3688..3787 -
1622815490.0819826-CDS-L-elsbetiae_contig13085:4267..43871622815490.0819826-CDS-L-elsbetiae_contig13085:4267..4387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 4268..4387 -
1691682923.566438-CDS-L-elsbetiae_contig13085:4267..43871691682923.566438-CDS-L-elsbetiae_contig13085:4267..4387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13085 4268..4387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13085.2434.1

>prot_L-elsbetiae_contig13085.2434.1 ID=prot_L-elsbetiae_contig13085.2434.1|Name=mRNA_L-elsbetiae_contig13085.2434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
GSGYGGGVDRVSSRLRRGAGVAGGGRAWRQRSAVAMPVHQMLEVLRAESW
PAFDRLEREDLERRILDEAAGVFAEVVASRRATGQRTHELTDGTAATLDS
PATRVWAQVLGEVQRRTEGNENGIVLRCEGVRRREAERFRHASAQTTAFL
RDLAASVGCSDNHWSVLPCAPAPAPAPAVRRPTTAGGAGGARR
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mRNA from alignment at L-elsbetiae_contig13085:2115..4387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13085.2434.1 ID=mRNA_L-elsbetiae_contig13085.2434.1|Name=mRNA_L-elsbetiae_contig13085.2434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2273bp|location=Sequence derived from alignment at L-elsbetiae_contig13085:2115..4387- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGGCTATGGCGGCGGTGTCGATCGGGTGTCTTCAAGGCTTCGGCG
CGGGGCAGGCGTTGCGGGCGGCGGGAGAGCGTGGCGTCAACGGTCGGCTG
TGGCCATGCCCGTACACCAGGTAGGTACATACGAATTTTTTACTACATTG
CCACAAGCACGGCCCCCCTCATGCCGCCGCCAGAGGCGCCGTGCGTGTCT
AAAACGCGGAGAGGAAATCGAGGTAGATGCTCTTACATAAAAACAAAGGT
GAGATTTAAACCAACACTTCCATACGCACGAAAATGCAAATGTGAACGGT
GCGTGTTACGACGACACCCGTAGGGCTTTTTTTGGTACTCGGGACAATAA
TGACGCCCGTTGGGCCGCCGCGGGCGTGTATGCTCGTACTGCGGCGCAAT
TTATCACCGTGAAATTGTAGTATTTCACTGCGAACGTGTGCTTGTAGATA
TACCACATACATAGTTCGTACACTTCGCACAACATCAACAAACAACAAAA
AAAGTTAAGAAACGTGAAAACGTCGAGTCTCTTCCCCAAGAGGGTAGAAA
CCGCGGCGATCACCCCGCATCATCCCGCCTCCGGTCTATTGTTGCTCAAG
ATGCTTGAGGTGCTCCGAGCAGAAAGTTGGCCCGCTTTCGACCGACTGGA
ACGGGAGGACCTGGAGAGGCGCATCCTCGACGAGGCCGCGGGAGTGTTCG
GTGAGCCGACCGAGCGCGTGGCGCAAGAGCTCTGAGCTGCTGTAGTGTTT
TGTGGCGGGAAATGCGCGCGCGATACACCGGGGACGCAGGCGGGCTTTTC
ATGAACAGCCCCCGGTCCGAGAACCGGTCCGAGAACCGCCGCAATAGGCG
TAGTCCTTATGTAGCTTTCGCCGCCTCGCGAGAGTCATGTTTCGGGGATG
TGTGTTTGTTTGTTTGTATGTTTGTTTGTTTGTATCTGCCACCAGAGGTG
TGCGAATGTAGGCGGCATTTTGGGGAGAGAGAGCGCGTTCTGGTTCAGGA
AAAGTCCGACCCGCTCCTCTCTCTTCTTGTTTGTTGCTCCATGCCTTCGT
CTTCGGAGAGAACACACACCAGCAGGTACTTTGGATAACACAACTCCGGT
CTTAAGAAAGACATGGAACTAAAATGTACCCTGAAGTGTTAGCAGCACAG
CAGCCGTGCGCTTGCTTTTGTTTTTGTCGGGTCTGCCTTGCACCGACGGG
ATCGACCGACGGCATCATGCGTTGGACGAGCACGGACAGATGAATGCAGT
GAGTAGAGATACCGGGACGGCCTGTATTGTGACGACGACGACGACAACAA
CAACAACAACAAATAACTAACGCCCTCTTCGCTCCATCGGGTCGGAACCG
CACTGCTGCCGTGCCTCAGCCGAGGTTGTCGCCAGCCGGCGGGCGACGGG
CCAGCGCACGCACGAGTTAACCGACGGCACGGCGGCGACGCTCGACTCGC
CCGCCACTCGAGTATGGGCGCAGGTTCTCGGGGAGGTGGGTGATCGGGGC
GAAGCATTAACCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGTCGCAGGG
GAGGATGGAGACCAGTGGGGTAGACAACGAGTAAGCCAACAATGGGAGGA
AACAAAAATTAAGAATGGCGAAGCGCGCGCAGCTGACTGGCTGCCGTGGC
AAACGCCAGTTTTGTCGTCGGGCATCGTGTGCTAATATTGTATGGAGGGC
TTGAGAGTCGTTCATAGCGTGCCGTGTCTGCGTATGTTGCGGTACTTAAT
TTATGTCGCAGGCAATCTGCTCTCGGGCTACTTTTTCGCAGTTCGATGCG
GCGGAACCATTTGGCGGGTTTAGTTTAGGTGTGGGTGCGGCTGAACGCTA
AGGGTTAACTTTTTTTTTTCTGGCACGCTCTCGTCGGAGTTGCGATGCCT
TTTGGGCGTGAGGGTTATTTTTGCGCGGCACCAAAGCCCTGTCTATCTGT
GTGCCCGCGCGCGACGTGCATGCTTGCTTGTGCGGCGCGCTCTCAACCCG
ACCTACGGACGATAACAATCCTTGCGGTAGGTCCAGCGGCGGACGGAGGG
CAACGAGAACGGCATCGTGCTGCGCTGCGAGGGCGTCCGCCGACGAGAGG
CGGAACGCTTCCGCCACGCGTCCGCCCAGACGACCGCCTTCCTGCGCGAC
CTCGCGGCCTCCGTCGGCTGCAGCGACAACCACTGGTCGGTGCTACCCTG
CGCACCGGCACCGGCACCAGCACCGGCGGTGCGACGCCCCACAACCGCCG
GCGGTGCCGGCGGCGCGCGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13085:2115..4387-

>mRNA_L-elsbetiae_contig13085.2434.1 ID=mRNA_L-elsbetiae_contig13085.2434.1|Name=mRNA_L-elsbetiae_contig13085.2434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig13085:2115..4387- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGGCTATGGCGGCGGTGTCGATCGGGTGTCTTCAAGGCTTCGGCG
CGGGGCAGGCGTTGCGGGCGGCGGGAGAGCGTGGCGTCAACGGTCGGCTG
TGGCCATGCCCGTACACCAGGGCAGCGGCTATGGCGGCGGTGTCGATCGG
GTGTCTTCAAGGCTTCGGCGCGGGGCAGGCGTTGCGGGCGGCGGGAGAGC
GTGGCGTCAACGGTCGGCTGTGGCCATGCCCGTACACCAGATGCTTGAGG
TGCTCCGAGCAGAAAGTTGGCCCGCTTTCGACCGACTGGAACGGGAGGAC
CTGGAGAGGCGCATCCTCGACGAGGCCGCGGGAGTGTTCGATGCTTGAGG
TGCTCCGAGCAGAAAGTTGGCCCGCTTTCGACCGACTGGAACGGGAGGAC
CTGGAGAGGCGCATCCTCGACGAGGCCGCGGGAGTGTTCGCCGAGGTTGT
CGCCAGCCGGCGGGCGACGGGCCAGCGCACGCACGAGTTAACCGACGGCA
CGGCGGCGACGCTCGACTCGCCCGCCACTCGAGTATGGGCGCAGGTTCTC
GGGGAGCCGAGGTTGTCGCCAGCCGGCGGGCGACGGGCCAGCGCACGCAC
GAGTTAACCGACGGCACGGCGGCGACGCTCGACTCGCCCGCCACTCGAGT
ATGGGCGCAGGTTCTCGGGGAGGTCCAGCGGCGGACGGAGGGCAACGAGA
ACGGCATCGTGCTGCGCTGCGAGGGCGTCCGCCGACGAGAGGCGGAACGC
TTCCGCCACGCGTCCGCCCAGACGACCGCCTTCCTGCGCGACCTCGCGGC
CTCCGTCGGCTGCAGCGACAACCACTGGTCGGTGCTACCCTGCGCACCGG
CACCGGCACCAGCACCGGCGGTGCGACGCCCCACAACCGCCGGCGGTGCC
GGCGGCGCGCGAAGGGTCCAGCGGCGGACGGAGGGCAACGAGAACGGCAT
CGTGCTGCGCTGCGAGGGCGTCCGCCGACGAGAGGCGGAACGCTTCCGCC
ACGCGTCCGCCCAGACGACCGCCTTCCTGCGCGACCTCGCGGCCTCCGTC
GGCTGCAGCGACAACCACTGGTCGGTGCTACCCTGCGCACCGGCACCGGC
ACCAGCACCGGCGGTGCGACGCCCCACAACCGCCGGCGGTGCCGGCGGCG
CGCGAAGG
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