mRNA_L-elsbetiae_contig13066.2422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13066.2422.1
Unique NamemRNA_L-elsbetiae_contig13066.2422.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13066.2422.1 vs. uniprot
Match: D7G845_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G845_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.260e-42
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:   10 QSANPAWGLGAGGLLRGAHRLLLRYPAAQQLLENEQDRPGSGPFRADLSNPEHANALSSAAWELSLLRNSCEPAISAVA 246
            QSANPAWGLGAGGLLRGAHRLLLRYPAAQQLLENEQDRPGSGPFR DL+NPEHANALSSAAWELSLLRNSCEPAI+AVA
Sbjct:  741 QSANPAWGLGAGGLLRGAHRLLLRYPAAQQLLENEQDRPGSGPFRPDLTNPEHANALSSAAWELSLLRNSCEPAIAAVA 819
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13066.2422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G845_ECTSI6.260e-4296.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13066contigL-elsbetiae_contig13066:4911..5156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue7.6e-36
Seed eggNOG ortholog2880.D7G845
KEGG koko:K14834
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022402,GO:0022607,GO:0022613,GO:0030684,GO:0030687,GO:0030689,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0036387,GO:0036388,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044786,GO:0046483,GO:0065003,GO:0065004,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:1901360,GO:1901576,GO:1902299,GO:1990904
EggNOG free text desc.chromatin binding
EggNOG OGsCOG5117@1,KOG2153@2759
COG Functional cat.JU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.7175598-CDS-L-elsbetiae_contig13066:4910..51561622815488.7175598-CDS-L-elsbetiae_contig13066:4910..5156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13066 4911..5156 -
1691682922.73231-CDS-L-elsbetiae_contig13066:4910..51561691682922.73231-CDS-L-elsbetiae_contig13066:4910..5156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13066 4911..5156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13066.2422.1prot_L-elsbetiae_contig13066.2422.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13066 4911..5156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13066.2422.1

>prot_L-elsbetiae_contig13066.2422.1 ID=prot_L-elsbetiae_contig13066.2422.1|Name=mRNA_L-elsbetiae_contig13066.2422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
LAPQSANPAWGLGAGGLLRGAHRLLLRYPAAQQLLENEQDRPGSGPFRAD
LSNPEHANALSSAAWELSLLRNSCEPAISAVA
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mRNA from alignment at L-elsbetiae_contig13066:4911..5156-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13066.2422.1 ID=mRNA_L-elsbetiae_contig13066.2422.1|Name=mRNA_L-elsbetiae_contig13066.2422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig13066:4911..5156- (Laminarionema elsbetiae ELsaHSoW15)
TTGGCTCCGCAGTCTGCCAATCCAGCATGGGGCTTAGGCGCTGGTGGCCT
CCTCCGCGGAGCCCACCGTCTCCTCCTCCGGTACCCGGCGGCGCAGCAGC
TTCTCGAGAACGAGCAGGACAGGCCCGGCTCGGGCCCGTTCCGGGCGGAC
CTCTCCAACCCCGAGCACGCAAACGCGCTCTCCTCGGCGGCGTGGGAGCT
GTCCCTGCTGCGCAATAGCTGCGAGCCCGCGATCTCGGCGGTGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13066:4911..5156-

>mRNA_L-elsbetiae_contig13066.2422.1 ID=mRNA_L-elsbetiae_contig13066.2422.1|Name=mRNA_L-elsbetiae_contig13066.2422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig13066:4911..5156- (Laminarionema elsbetiae ELsaHSoW15)
TTGGCTCCGCAGTCTGCCAATCCAGCATGGGGCTTAGGCGCTGGTGGCCT
CCTCCGCGGAGCCCACCGTCTCCTCCTCCGGTACCCGGCGGCGCAGCAGC
TTCTCGAGAACGAGCAGGACAGGCCCGGCTCGGGCCCGTTCCGGGCGGAC
CTCTCCAACCCCGAGCACGCAAACGCGCTCTCCTCGGCGGCGTGGGAGCT
GTCCCTGCTGCGCAATAGCTGCGAGCCCGCGATCTCGGCGGTGGCCTTGG
CTCCGCAGTCTGCCAATCCAGCATGGGGCTTAGGCGCTGGTGGCCTCCTC
CGCGGAGCCCACCGTCTCCTCCTCCGGTACCCGGCGGCGCAGCAGCTTCT
CGAGAACGAGCAGGACAGGCCCGGCTCGGGCCCGTTCCGGGCGGACCTCT
CCAACCCCGAGCACGCAAACGCGCTCTCCTCGGCGGCGTGGGAGCTGTCC
CTGCTGCGCAATAGCTGCGAGCCCGCGATCTCGGCGGTGGCC
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