mRNA_L-elsbetiae_contig13063.2421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13063.2421.1
Unique NamemRNA_L-elsbetiae_contig13063.2421.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A662YIV5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIV5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 9.880e-35
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 2 
Query:   89 VGSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            VG FQ +GLS  +FRG+MAMGYKVPTP+QRKSLP+ L+G D V MARTGSGKTAAFLIP++EKL  HS K+G R ++LSPTRELAVQ
Sbjct:   36 VGGFQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLIPMVEKLKEHSTKIGVRGLVLSPTRELAVQ 122
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A8K1CNV6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNV6_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 1.280e-33
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 2 
Query:   89 VGSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            VG FQ +GLS ++FRG+MAMGYKVPTP+QRK+LP+ L+G DVV MARTGSGKTAAFLIP+LEKL  HS K+G R+++LSPTRELAVQ
Sbjct:   33 VGGFQHLGLSPQIFRGVMAMGYKVPTPIQRKTLPIVLSGKDVVAMARTGSGKTAAFLIPMLEKLKEHSKKIGVRAVVLSPTRELAVQ 119
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: K3X9Z7_GLOUD (RNA helicase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9Z7_GLOUD)

HSP 1 Score: 135 bits (340), Expect = 1.290e-33
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 2 
Query:   89 VGSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQAC*LTLLSA 376
            VG FQ +GLS  +FRG+MAMGYKVPTP+QRKSLP+ L+G DVV MARTGSGKTAAFLIP+LEKL  HS K+G R++ILSPTRELAVQ    T + A
Sbjct:   34 VGGFQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDVVAMARTGSGKTAAFLIPMLEKLKEHSRKIGVRALILSPTRELAVQTMRFTKMLA 129
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A835Z3G9_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.770e-33
Identity = 70/97 (72.16%), Postives = 78/97 (80.41%), Query Frame = 2 
Query:   65 MKPPAKPKV--GSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            M PP K K   G FQ++ LS E+ RG+M MGY+VPTPVQRKSLPVTL   D VVMARTGSGKTAAFLIPVLEKL  HS KMG RS+ILSP+RELA+Q
Sbjct:    1 MPPPDKKKAKSGGFQSLALSPEVMRGVMLMGYRVPTPVQRKSLPVTLTNVDTVVMARTGSGKTAAFLIPVLEKLKEHSTKMGVRSVILSPSRELALQ 97
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A6H5KZB1_9PHAE (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZB1_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.450e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 2 
Query:  140 MAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            MAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLG HSHKMGARSIILSPTRELAVQ
Sbjct:    1 MAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGSHSHKMGARSIILSPTRELAVQ 70
[Close]
BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A5D6Y2F7_9STRA (RNA helicase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F7_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.280e-33
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 2 
Query:   89 VGSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            VG FQ +GLS  +FRG+MAMGYKVPTP+QRKSLP+ L+G DVV MARTGSGKTAAFLIP+LEKL  HS K+G R+++LSPTRELAVQ
Sbjct:   39 VGGFQHLGLSPPVFRGVMAMGYKVPTPIQRKSLPIVLSGKDVVAMARTGSGKTAAFLIPMLEKLKEHSTKVGVRALVLSPTRELAVQ 125
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A2D4CBC0_PYTIN (RNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBC0_PYTIN)

HSP 1 Score: 134 bits (336), Expect = 4.380e-33
Identity = 63/86 (73.26%), Postives = 76/86 (88.37%), Query Frame = 2 
Query:   92 GSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            G FQ++GLS  +FRG+MAMGYKVPTP+QRK+LP+ L+G DVV MARTGSGKTAAFLIP+LEKL  HS K+G R+++LSPTRELAVQ
Sbjct:   33 GGFQSLGLSPPIFRGVMAMGYKVPTPIQRKTLPIVLSGKDVVAMARTGSGKTAAFLIPMLEKLKEHSKKIGVRAVVLSPTRELAVQ 118
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A1S3GV71_DIPOR (RNA helicase n=1 Tax=Dipodomys ordii TaxID=10020 RepID=A0A1S3GV71_DIPOR)

HSP 1 Score: 124 bits (310), Expect = 4.660e-33
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 2 
Query:   47 TRQRSIMKPPAKPKVGSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            TR+    +   K K G FQ+MGLS  +F+G+M  GYKVPTP+QRK++PV L G DVV MARTGSGKTA FL+P+ E+L  HS + GAR++ILSPTRELA+Q
Sbjct:   23 TREMVRAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAHSAQTGARALILSPTRELALQ 123
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BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A7S0DAR3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DAR3_9EUKA)

HSP 1 Score: 122 bits (305), Expect = 7.230e-33
Identity = 57/90 (63.33%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:   80 KPKVGSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            K K G FQ+MGL + +FRG+M  G+KVPTP+QRK++PV L G DVV MARTGSGKT AF+IP+LEKL  H  K+  RS+++SPTRELA+Q
Sbjct:   10 KKKSGGFQSMGLCEPVFRGVMKKGFKVPTPIQRKTIPVILTGRDVVAMARTGSGKTGAFIIPLLEKLKEHRPKLDVRSVVISPTRELAMQ 99
[Close]
BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Match: A0A067CU93_SAPPC (RNA helicase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU93_SAPPC)

HSP 1 Score: 132 bits (333), Expect = 1.100e-32
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 2 
Query:   80 KPKVGSFQAMGLSQELFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKTAAFLIPVLEKLGGHSHKMGARSIILSPTRELAVQ 349
            K K G FQA+GLS  +F+ +MAMGYKVPTP+QRKSLP  L+G DVV MARTGSGKTAAFLIP+LEKL  HS K+G R++ILSPTRELAVQ
Sbjct:    8 KNKSGGFQALGLSPPIFKAVMAMGYKVPTPIQRKSLPHVLSGKDVVAMARTGSGKTAAFLIPMLEKLKEHSKKIGVRALILSPTRELAVQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13063.2421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662YIV5_9STRA9.880e-3572.41Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A8K1CNV6_PYTOL1.280e-3373.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X9Z7_GLOUD1.290e-3370.83RNA helicase n=1 Tax=Globisporangium ultimum (stra... [more]
A0A835Z3G9_9STRA1.770e-3372.16RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A6H5KZB1_9PHAE2.450e-3398.57RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A5D6Y2F7_9STRA3.280e-3374.71RNA helicase n=1 Tax=Pythium brassicum TaxID=14850... [more]
A0A2D4CBC0_PYTIN4.380e-3373.26RNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A1S3GV71_DIPOR4.660e-3360.40RNA helicase n=1 Tax=Dipodomys ordii TaxID=10020 R... [more]
A0A7S0DAR3_9EUKA7.230e-3363.33Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A067CU93_SAPPC1.100e-3273.33RNA helicase n=3 Tax=Saprolegniaceae TaxID=4764 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13063contigL-elsbetiae_contig13063:578..1989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size526
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13063.2421.1prot_L-elsbetiae_contig13063.2421.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13063 714..1989 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.6507022-UTR-L-elsbetiae_contig13063:577..7131622815488.6507022-UTR-L-elsbetiae_contig13063:577..713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13063 578..713 -
1691682922.6895099-UTR-L-elsbetiae_contig13063:577..7131691682922.6895099-UTR-L-elsbetiae_contig13063:577..713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13063 578..713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.6721478-CDS-L-elsbetiae_contig13063:713..9671622815488.6721478-CDS-L-elsbetiae_contig13063:713..967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13063 714..967 -
1691682922.7094572-CDS-L-elsbetiae_contig13063:713..9671691682922.7094572-CDS-L-elsbetiae_contig13063:713..967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13063 714..967 -
1622815488.6834273-CDS-L-elsbetiae_contig13063:1853..19891622815488.6834273-CDS-L-elsbetiae_contig13063:1853..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13063 1854..1989 -
1691682922.721281-CDS-L-elsbetiae_contig13063:1853..19891691682922.721281-CDS-L-elsbetiae_contig13063:1853..1989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13063 1854..1989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13063.2421.1

>prot_L-elsbetiae_contig13063.2421.1 ID=prot_L-elsbetiae_contig13063.2421.1|Name=mRNA_L-elsbetiae_contig13063.2421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MGHRQAEDRADNRRSNASTFHNEASCKAESWELPGHGSEPRIISWDHGHG
LQGADAGPAQVPSRHPRRRGRGGHGKDRLGKDGGVPHPRAGKAGRPQPQD
GGPVDHPVAYPRARRPGMLIDTAFCFCVL*
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mRNA from alignment at L-elsbetiae_contig13063:578..1989-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13063.2421.1 ID=mRNA_L-elsbetiae_contig13063.2421.1|Name=mRNA_L-elsbetiae_contig13063.2421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1412bp|location=Sequence derived from alignment at L-elsbetiae_contig13063:578..1989- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCACAGGCAGGCAGAAGACAGGGCAGACAACAGGCGAAGCAACGC
GTCAACGTTCCATAATGAAGCCTCCTGCAAAGCCGAAAGTTGGGAGCTTC
CAGGCCATGGGTCTGAGCCAAGAATTATTTCGTGGGGTAAGTGACGGCAG
ATAGAAGCGATCGAAAAATCAATAATGCCTCTGCCCTCTGTGGCCGCACA
TCGGTGTGCAGTGCAGTGGGAGCTGCAGCTCAGTGTGAGCACGGTTCAGA
CGATGAAGCGGGAATGGGTCCGATGATATTTACTTTCCACCCATGTTCTA
CTATCTGCGCTTTTAATGGTATTTTTCCCAGCAGAACCAGCAGCACTGCT
GTCAATGGATACAAGTAGCGGTGTGTTTTACGCATCATATGTATGACATG
AGTACCAAGACTAGATAGTAGTCTTGTGATGAGAGATAATTTAGGTGGGG
GCACCCGTGTTACATGATCGACGCTCGTCCAGCTGTGACCTTAGCCGATT
TCTAAGCTCTTGGTTCACATCATACGGCATTTTCTCCGAAATGCAACACG
TTCACCACTCCGCATTTGTCTGTCGTTCCTCACCCTCGGTCTCACGTGGG
GTGCGCGGTACTATAGTTTGTACATCAGAGTTTTGAACGGCCCCAGCAAG
CAAAAACACACGCTCTCAGTGGTTCCGCAACAAATCGCGGAAGCTCTAGA
TTTACAGCAGTAAATGGCTCCCTAGCCTTCAGAGCCACGTTTACGTACGT
TCCATGTGTATGCAAATAGCTCGGCAGCGCGCCGCTGTCACAGATGCGGC
ATTGGTGGTCACCGCAAAATTACGCCCCGTCGCGCTACTAAATAAGCGTC
TCCGTTGGTAAGCATGCTGGTAAATATGGTCCCATGCACGTGCGAGCGAT
CCCGTTCTCCCTCTCTCTCCCACCCCGCTTCAAGACCATGGCCATGGGCT
ACAAACTTGTAAATAGGTCCCGTGCACGTGCAAACGATCCCGTTCTCCCT
CTCTCTCCCACCCCGCTTCAAGATCATGGCCATGGGCTACAAGGTGCCGA
CGCCGGTCCAGCGCAAGTCCCTTCCCGTCACCCTCGCCGGCGCGGACGTG
GTGGTCATGGCAAGGACCGGCTCGGGAAAGACGGCGGCGTTCCTCATCCC
CGTGCTGGAAAAGCTGGGCGGCCACAGCCACAAGATGGGGGCCCGGTCGA
TCATCCTGTCGCCTACCCGAGAGCTCGCCGTCCAGGCATGTTAATTGACA
CTGCTTTCTGCTTCTGTGTATTGTAGGGGTAGGGCGGTCTCTGAGACCCC
GGTGCTGGTGGTGACTGGTTGGTGCTTGTCTACGCCTCGGGGTTGTCTTG
CTGGTTGTAGTGTGTGTGTGTGTTCTTCCCATTTATTTTGGCGACAGTCC
CCCCAAGTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13063:578..1989-

>mRNA_L-elsbetiae_contig13063.2421.1 ID=mRNA_L-elsbetiae_contig13063.2421.1|Name=mRNA_L-elsbetiae_contig13063.2421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig13063:578..1989- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCACAGGCAGGCAGAAGACAGGGCAGACAACAGGCGAAGCAACGC
GTCAACGTTCCATAATGAAGCCTCCTGCAAAGCCGAAAGTTGGGAGCTTC
CAGGCCATGGGTCTGAGCCAAGAATTATTTCGTGGGATGGGCCACAGGCA
GGCAGAAGACAGGGCAGACAACAGGCGAAGCAACGCGTCAACGTTCCATA
ATGAAGCCTCCTGCAAAGCCGAAAGTTGGGAGCTTCCAGGCCATGGGTCT
GAGCCAAGAATTATTTCGTGGGATCATGGCCATGGGCTACAAGGTGCCGA
CGCCGGTCCAGCGCAAGTCCCTTCCCGTCACCCTCGCCGGCGCGGACGTG
GTGGTCATGGCAAGGACCGGCTCGGGAAAGACGGCGGCGTTCCTCATCCC
CGTGCTGGAAAAGCTGGGCGGCCACAGCCACAAGATGGGGGCCCGGTCGA
TCATCCTGTCGCCTACCCGAGAGCTCGCCGTCCAGGCATGTTAATTGACA
CTGCTTTCTGCTTCTGTGTATTGTAGATCATGGCCATGGGCTACAAGGTG
CCGACGCCGGTCCAGCGCAAGTCCCTTCCCGTCACCCTCGCCGGCGCGGA
CGTGGTGGTCATGGCAAGGACCGGCTCGGGAAAGACGGCGGCGTTCCTCA
TCCCCGTGCTGGAAAAGCTGGGCGGCCACAGCCACAAGATGGGGGCCCGG
TCGATCATCCTGTCGCCTACCCGAGAGCTCGCCGTCCAGGCATGTTAATT
GACACTGCTTTCTGCTTCTGTGTATTGTAG
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