mRNA_L-elsbetiae_contig13053.2416.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13053.2416.1
Unique NamemRNA_L-elsbetiae_contig13053.2416.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13053.2416.1 vs. uniprot
Match: A0A6H5JPH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.400e-27
Identity = 116/254 (45.67%), Postives = 138/254 (54.33%), Query Frame = 1 
Query:   70 PLLRERGNREGSA-----DTAADGATFDAASFCAVPREQAEADAHPLALPRVKQRARRXXXXXXXXXXXXXXXASTASRSFS--------APAVSGAGIVDADLFGAAFGGSGSNTAGLRADS---RTDGDDPLSQLWLPPPAVVAPGPH---GGGGGDGGLADSGTASLPKVQASEPLFDDDERDVKVAAAGLSDDPLSIMMQERAVARNISRHGGALHDD--VDD--IAPGSPASADAMSVL---GGGRSSL 753
            PL   RG   G +      TAA  A   AA+F  +PREQA AD HPLA+PRVKQR RR  XXXXXXXXXXXXX                  P  + A I     F    G S +   G    S    +   DPL +LW+ PP      P    G G G+GG+A S TA  P+ Q +         DVKVA AGLSDDPLS+MMQERA+ARN+SRHGG++ D+  +DD  + PGSP SA   SV+   GGG SSL
Sbjct:   16 PLAACRGGNNGDSCGPPGTTAAYAAGAGAAAFRPLPREQALADKHPLAVPRVKQRPRRTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPTAAAATIAGNGKFATVLGDSKAGNIGGTDSSGXXXSKNKDPLLELWMTPPXXXXSAPESIPGEGEGEGGVAGSTTAHAPETQLA---------DVKVAVAGLSDDPLSMMMQERAMARNMSRHGGSVPDNDMLDDAIMTPGSPGSAGTASVVLGNGGGGSSL 260
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BLAST of mRNA_L-elsbetiae_contig13053.2416.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.940e-21
Identity = 113/251 (45.02%), Postives = 129/251 (51.39%), Query Frame = 1 
Query:   55 AIRWTPLLRER-GNREGSADT-AADGATFDAASFCAVPREQAEADAHPLALPRVKQRARRXXXXXXXXXXXXXXXASTASRSFSAPAVSGAGIVDADL---------FGAAFGGS----------GSNTAGLRADSRTDGDDPLSQLWLPPPAVVAPGPHGGGGGDGGLADSGTASLPKVQASEPLFDDDERDVKVAAAGLSDDPLSIMMQERAVARNISRHGGA-LHDDVDD---IAPGSPASADAMSVL 732
            AI WTP+LR   G+  G A T AA  A   AA+F  +PREQA AD HPLA+PRVKQR RR  XXXXXXXXXXXXX                                F A FG S                                    P  V     G G G+GG+ADS TA  P+ Q +  +F+D ERDVKVA AGLSDDPLS+MMQERAVARN+SRHGG  L DD+ D   + PGSP SA   SV+
Sbjct:    8 AITWTPILRNNDGDSCGPAGTTAACVAGAGAAAFRTLPREQALADKHPLAVPRVKQRPRRTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNFAAVFGDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPESVP----GDGKGEGGVADSTTAHAPETQLA--VFNDVERDVKVAVAGLSDDPLSMMMQERAVARNMSRHGGGVLDDDMLDGAIMTPGSPGSAGTASVV 252
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13053.2416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPH3_9PHAE2.400e-2745.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLV5_ECTSI2.940e-2145.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13053contigL-elsbetiae_contig13053:2264..4174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue5.1e-22
Seed eggNOG ortholog2880.D8LLV5
Preferred nameC16orf62
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.protein transport
EggNOG OGsKOG3682@1,KOG3682@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size772
Cds size768
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13053.2416.1prot_L-elsbetiae_contig13053.2416.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13053 2266..4174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.069182-CDS-L-elsbetiae_contig13053:2265..23721622815488.069182-CDS-L-elsbetiae_contig13053:2265..2372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 2266..2372 -
1691682922.2840722-CDS-L-elsbetiae_contig13053:2265..23721691682922.2840722-CDS-L-elsbetiae_contig13053:2265..2372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 2266..2372 -
1622815488.0798192-CDS-L-elsbetiae_contig13053:2824..29181622815488.0798192-CDS-L-elsbetiae_contig13053:2824..2918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 2825..2918 -
1691682922.2957752-CDS-L-elsbetiae_contig13053:2824..29181691682922.2957752-CDS-L-elsbetiae_contig13053:2824..2918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 2825..2918 -
1622815488.0899084-CDS-L-elsbetiae_contig13053:3269..37711622815488.0899084-CDS-L-elsbetiae_contig13053:3269..3771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 3270..3771 -
1691682922.3063328-CDS-L-elsbetiae_contig13053:3269..37711691682922.3063328-CDS-L-elsbetiae_contig13053:3269..3771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 3270..3771 -
1622815488.102588-CDS-L-elsbetiae_contig13053:4109..41741622815488.102588-CDS-L-elsbetiae_contig13053:4109..4174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 4110..4174 -
1691682922.3223283-CDS-L-elsbetiae_contig13053:4109..41741691682922.3223283-CDS-L-elsbetiae_contig13053:4109..4174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13053 4110..4174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13053.2416.1

>prot_L-elsbetiae_contig13053.2416.1 ID=prot_L-elsbetiae_contig13053.2416.1|Name=mRNA_L-elsbetiae_contig13053.2416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
SIEQAQASEQRTAFDMKGAIRWTPLLRERGNREGSADTAADGATFDAASF
CAVPREQAEADAHPLALPRVKQRARRSTSTTTTTTTGARRRASTASRSFS
APAVSGAGIVDADLFGAAFGGSGSNTAGLRADSRTDGDDPLSQLWLPPPA
VVAPGPHGGGGGDGGLADSGTASLPKVQASEPLFDDDERDVKVAAAGLSD
DPLSIMMQERAVARNISRHGGALHDDVDDIAPGSPASADAMSVLGGGRSS
LGGSEA
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mRNA from alignment at L-elsbetiae_contig13053:2264..4174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13053.2416.1 ID=mRNA_L-elsbetiae_contig13053.2416.1|Name=mRNA_L-elsbetiae_contig13053.2416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1911bp|location=Sequence derived from alignment at L-elsbetiae_contig13053:2264..4174- (Laminarionema elsbetiae ELsaHSoW15)
AGCATCGAGCAGGCGCAGGCAAGCGAGCAGAGAACAGCTTTCGACATGAA
GGGTGCCATCCGTTGGTGAGTGAACTTCTCTCACGACTACCGTGGAGGCG
AAGCAGGTGCAGGAGCAGAGGAAGTTGGCATTCTCACGCAAAAACGTTCC
GTTCTTCACCTGTTTCCACAACATGGTGTACTGGCTCGCGCGAGAAGAGT
GGTTGGCACCTGATATGCTGTAACTACACACACCGTGCACGCGAAACTGC
TGCTGTATCCAGCTTTTCCCCGCAAGGTACGGCGCATCCTCTGGCCCATT
GCACGTACAACCACATAGTCTCCATACTCCATACTCCCATAATTAGACCG
TTCATGTGGTAGACTAGATCTAATCGTCCCGCATTTCGCATTTCATTCCA
AAGGACGCCACTACTGCGCGAGCGTGGCAACCGAGAAGGATCCGCGGACA
CCGCCGCCGACGGAGCTACCTTCGATGCGGCCAGTTTCTGCGCTGTGCCT
CGCGAGCAAGCAGAAGCCGATGCGCACCCGCTAGCCCTTCCTCGAGTAAA
GCAGCGCGCTCGACGTTCAACGTCAACAACGACAACGACAACGACCGGCG
CCCGCAGGCGGGCGTCTACTGCTAGCAGAAGCTTTTCAGCTCCAGCAGTG
AGCGGCGCGGGTATCGTTGATGCCGACCTCTTCGGCGCTGCTTTCGGCGG
CTCCGGTAGCAACACAGCGGGCCTTCGGGCGGATAGCCGTACGGACGGCG
ATGATCCCTTGTCGCAGCTGTGGCTGCCGCCGCCGGCGGTGGTTGCTCCA
GGACCTCACGGCGGGGGCGGCGGCGATGGTGGGTTGGCCGATAGCGGTAC
CGCGTCGCTACCGAAAGTACAGGCGTCAGAACCACTCTTTGACGACGATG
AGCGGGTGAGTGGGTGTATGTCGAGGAGTTGTGTGGTGTGCTTGCTGCTG
TGACCTTTAAAGGTTTTAAGGTGCATCGGTACAGCAGCCGCACTTGTAGC
TATGCATAGGTTATAGGTTTACACGGCTTGGGACAATTACTGTTGTGCAC
GTCTGGAGAGCGGAGATAGATGGAATCCTGCGAACACACAGGACGGATGC
CAGGCTTGTTCGTGCAGCGATTGCAGTAGCTTGAACATGATATCGCAGCG
AGAATCTTGCTGTCATGTTGTGAAACATACCTAGATGCACGCGTAGATTT
TTTTGTCTCTCCCGCTTTCAACCAGCGCTGCTCCACCTCCGGCTGCGGTT
TGGCAGGATGTAAAGGTGGCCGCCGCCGGTCTATCCGACGACCCTCTGTC
CATCATGATGCAAGAGAGGGCAGTCGCGAGAAACATCTCAAGGCACGGGG
GTAAGAGGCACGCAGGAGAGCGCTTGGCTGCCGTTTGTGATCACAGCGCG
GTCGAGTAAACGCACCCTTTCTCTCTCGACTTCAAATGCGGCGTATGGGC
GCGCGGGGTTGCGGTTCCCGTTTTAACAAAAAAGTATTTTAGGTTGTTTT
TCTGCTCGCTTCGCCAAATATTACGTCACTTGTATGGAATACCGTTTGAA
CCCCATACCGAGTCCTTGCTTTTAGTGTGGGATAGGTTCCTTTTTGATTC
ATTGTTTATTTTTTTTAAAGTGAGGCCCGGCCCGGCCCGACGTATCTGTT
CGCGCGCCTGCGCCCCACCCTCTTGCGTGAGGTTCTGTCGCGTGTGTATG
TATGTATGTATGTATGTATGTATGTATAGCGAGCCCTCTGGCGTGTGGTG
CCTCCTTTTCCCCGACTTTTCACGCCGTCCTCTCTTGTCCGCTGGTTGAA
AGGTGCTTTGCACGACGACGTAGACGACATCGCGCCTGGGTCTCCAGCAT
CTGCCGACGCCATGAGCGTTCTCGGCGGCGGCCGCAGCTCGCTCGGGGGC
TCAGAAGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13053:2264..4174-

>mRNA_L-elsbetiae_contig13053.2416.1 ID=mRNA_L-elsbetiae_contig13053.2416.1|Name=mRNA_L-elsbetiae_contig13053.2416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig13053:2264..4174- (Laminarionema elsbetiae ELsaHSoW15)
AGCATCGAGCAGGCGCAGGCAAGCGAGCAGAGAACAGCTTTCGACATGAA
GGGTGCCATCCGTTGAGCATCGAGCAGGCGCAGGCAAGCGAGCAGAGAAC
AGCTTTCGACATGAAGGGTGCCATCCGTTGGACGCCACTACTGCGCGAGC
GTGGCAACCGAGAAGGATCCGCGGACACCGCCGCCGACGGAGCTACCTTC
GATGCGGCCAGTTTCTGCGCTGTGCCTCGCGAGCAAGCAGAAGCCGATGC
GCACCCGCTAGCCCTTCCTCGAGTAAAGCAGCGCGCTCGACGTTCAACGT
CAACAACGACAACGACAACGACCGGCGCCCGCAGGCGGGCGTCTACTGCT
AGCAGAAGCTTTTCAGCTCCAGCAGTGAGCGGCGCGGGTATCGTTGATGC
CGACCTCTTCGGCGCTGCTTTCGGCGGCTCCGGTAGCAACACAGCGGGCC
TTCGGGCGGATAGCCGTACGGACGGCGATGATCCCTTGTCGCAGCTGTGG
CTGCCGCCGCCGGCGGTGGTTGCTCCAGGACCTCACGGCGGGGGCGGCGG
CGATGGTGGGTTGGCCGATAGCGGTACCGCGTCGCTACCGAAAGTACAGG
CGTCAGAACCACTCTTTGACGACGATGAGCGGGACGCCACTACTGCGCGA
GCGTGGCAACCGAGAAGGATCCGCGGACACCGCCGCCGACGGAGCTACCT
TCGATGCGGCCAGTTTCTGCGCTGTGCCTCGCGAGCAAGCAGAAGCCGAT
GCGCACCCGCTAGCCCTTCCTCGAGTAAAGCAGCGCGCTCGACGTTCAAC
GTCAACAACGACAACGACAACGACCGGCGCCCGCAGGCGGGCGTCTACTG
CTAGCAGAAGCTTTTCAGCTCCAGCAGTGAGCGGCGCGGGTATCGTTGAT
GCCGACCTCTTCGGCGCTGCTTTCGGCGGCTCCGGTAGCAACACAGCGGG
CCTTCGGGCGGATAGCCGTACGGACGGCGATGATCCCTTGTCGCAGCTGT
GGCTGCCGCCGCCGGCGGTGGTTGCTCCAGGACCTCACGGCGGGGGCGGC
GGCGATGGTGGGTTGGCCGATAGCGGTACCGCGTCGCTACCGAAAGTACA
GGCGTCAGAACCACTCTTTGACGACGATGAGCGGGATGTAAAGGTGGCCG
CCGCCGGTCTATCCGACGACCCTCTGTCCATCATGATGCAAGAGAGGGCA
GTCGCGAGAAACATCTCAAGGCACGGGGGATGTAAAGGTGGCCGCCGCCG
GTCTATCCGACGACCCTCTGTCCATCATGATGCAAGAGAGGGCAGTCGCG
AGAAACATCTCAAGGCACGGGGGTGCTTTGCACGACGACGTAGACGACAT
CGCGCCTGGGTCTCCAGCATCTGCCGACGCCATGAGCGTTCTCGGCGGCG
GCCGCAGCTCGCTCGGGGGCTCAGAAGCGGTGCTTTGCACGACGACGTAG
ACGACATCGCGCCTGGGTCTCCAGCATCTGCCGACGCCATGAGCGTTCTC
GGCGGCGGCCGCAGCTCGCTCGGGGGCTCAGAAGCG
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