mRNA_L-elsbetiae_contig1305.2414.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1305.2414.1
Unique NamemRNA_L-elsbetiae_contig1305.2414.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1305.2414.1 vs. uniprot
Match: D7G3R6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R6_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 5.970e-91
Identity = 175/294 (59.52%), Postives = 210/294 (71.43%), Query Frame = 3 
Query:  246 EAPPNTTELLLKTHTSTDGSVSPKPRWSRGLPPTFDDDATCTSADKPQEESTXXXXXXXXXXXXXXGA--PSPPSLRSDA-TSNVSSXXXXSSKAYMAWSWLIEDEAASEPKLQKPDDANPVVPPCLLDSERELLCQRVELRLVEVGRQAADISALVDEYLRFMFLRRQLEGMLTLDPSPLVDDVWQAHIAFESEYAAFCKRTFGGQRLELGVPRREIDLSQPVLYENTVSAYHHFFGVCPPTDSWPSLSAV---GHPSLDGEEGHGQAAHADTSGRRRTLVRSSEEKFRFAKE 1109
            E  PNTT+LLL++HTSTDG +SPKPRW+RG P T  D  T    DK  +ES+XXXXXXXXX     G   P P SLR    +SN S       K YMAW WL+EDEAASEP+LQ+P +A+P V P L+D+ER+LLC+ VELRL+EVGR + DI ALV+EYLRFMFLR++LEGMLTLDPSPLVD VWQAHI  + EYAAFC+RTFGG+ LE GVP RE+D SQP+LYENTV AY HFFG   P + WP+ + V      +LDG+ G  + A  D SGRR   VR+ E K  FA+E
Sbjct:   66 ERSPNTTKLLLESHTSTDGHISPKPRWTRGNPNTEPD--TGADGDK-LDESSXXXXXXXXXASSEDGREEPLPTSLRPGGRSSNASGSSCGDRKWYMAWRWLLEDEAASEPRLQRPTEADPAVLPKLMDAERQLLCRNVELRLLEVGRHSTDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVDVVWQAHITSDREYAAFCERTFGGEGLECGVPHREVDASQPMLYENTVGAYEHFFGAVAPFECWPAPAVVVGGACTALDGK-GEEEEAPVDVSGRRTAFVRTEERKVHFAEE 355
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1305.2414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3R6_ECTSI5.970e-9159.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1305contigL-elsbetiae_contig1305:2327..5573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_000100.1
Exons4
Model size2103
Cds size873
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1305.2414.1prot_L-elsbetiae_contig1305.2414.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1305 2569..4585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.5570247-UTR-L-elsbetiae_contig1305:2326..25681622815487.5570247-UTR-L-elsbetiae_contig1305:2326..2568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1305 2327..2568 +
1691682922.0193179-UTR-L-elsbetiae_contig1305:2326..25681691682922.0193179-UTR-L-elsbetiae_contig1305:2326..2568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1305 2327..2568 +
1622815487.6457343-UTR-L-elsbetiae_contig1305:4585..55731622815487.6457343-UTR-L-elsbetiae_contig1305:4585..5573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1305 4586..5573 +
1691682922.067753-UTR-L-elsbetiae_contig1305:4585..55731691682922.067753-UTR-L-elsbetiae_contig1305:4585..5573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1305 4586..5573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.600774-CDS-L-elsbetiae_contig1305:2568..26181622815487.600774-CDS-L-elsbetiae_contig1305:2568..2618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 2569..2618 +
1691682922.02988-CDS-L-elsbetiae_contig1305:2568..26181691682922.02988-CDS-L-elsbetiae_contig1305:2568..2618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 2569..2618 +
1622815487.6138697-CDS-L-elsbetiae_contig1305:3176..35551622815487.6138697-CDS-L-elsbetiae_contig1305:3176..3555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 3177..3555 +
1691682922.0393384-CDS-L-elsbetiae_contig1305:3176..35551691682922.0393384-CDS-L-elsbetiae_contig1305:3176..3555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 3177..3555 +
1622815487.624719-CDS-L-elsbetiae_contig1305:3797..39431622815487.624719-CDS-L-elsbetiae_contig1305:3797..3943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 3798..3943 +
1691682922.0487814-CDS-L-elsbetiae_contig1305:3797..39431691682922.0487814-CDS-L-elsbetiae_contig1305:3797..3943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 3798..3943 +
1622815487.6344366-CDS-L-elsbetiae_contig1305:4287..45851622815487.6344366-CDS-L-elsbetiae_contig1305:4287..4585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 4288..4585 +
1691682922.0594885-CDS-L-elsbetiae_contig1305:4287..45851691682922.0594885-CDS-L-elsbetiae_contig1305:4287..4585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1305 4288..4585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1305.2414.1

>prot_L-elsbetiae_contig1305.2414.1 ID=prot_L-elsbetiae_contig1305.2414.1|Name=mRNA_L-elsbetiae_contig1305.2414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=291bp
MEAPPNTTELLLKTHTSTDGSVSPKPRWSRGLPPTFDDDATCTSADKPQE
ESTTPKTTASASTSDEEGAPSPPSLRSDATSNVSSTSSSSSKAYMAWSWL
IEDEAASEPKLQKPDDANPVVPPCLLDSERELLCQRVELRLVEVGRQAAD
ISALVDEYLRFMFLRRQLEGMLTLDPSPLVDDVWQAHIAFESEYAAFCKR
TFGGQRLELGVPRREIDLSQPVLYENTVSAYHHFFGVCPPTDSWPSLSAV
GHPSLDGEEGHGQAAHADTSGRRRTLVRSSEEKFRFAKET*
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mRNA from alignment at L-elsbetiae_contig1305:2327..5573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1305.2414.1 ID=mRNA_L-elsbetiae_contig1305.2414.1|Name=mRNA_L-elsbetiae_contig1305.2414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3247bp|location=Sequence derived from alignment at L-elsbetiae_contig1305:2327..5573+ (Laminarionema elsbetiae ELsaHSoW15)
AACCGTTTTATGTTTCTAGATCTCCCAAAAAGCGACATTTGCCTGCAGGC
GATTTGTAGGAACAGAATTCTTTCTTTCATAGATTTCCTATATCCACGTG
CGCTCGCAAGCGCTCCCTCCCACGCCCTAATACATCTCATACCCGGCATC
CGCACTCTACAGCTATCTGATCGAGGCTTCAACAACAGAAGCAAGCTACG
CCGAAATACTCCGAGCGATACGCCTGCACACGCAGCACGAAGATGGAAGC
TCCGCCAAACACAACTGAGCTGTTGCTGAAAACGCACACAAGGTTAGTAC
GTTTACGTATGTACAGCAGTGTACAGCCATCGAGCAGAGATAGGAAGGAC
ATCCAATATTTGTCTTGGATCGCTACCCGCCCTTGGTTGGTGGCCTCCCT
CTGTTCCTGCTCTGTGTTGTAGGTTTTCGTCTGTATCTATCAATCTATCT
ATCTATTGTACAGGTGTGTGCTTTTTTTTGAGAGGACTCTCACCAGGAGG
GGCAATCGAGATCCAGATGGGGGGGACGACAAAATCTGATACATATTCCG
TCCCGCGTGCCATGATATCAACTATCCACAAGTAAAGCGTCGAACGATTG
TTGCTTCGTTTATATCCTACATACTGCTGTGAGGGAATATTGTCAAGTGC
ACTGCTCCATCTCGAACAATCAGATATCTTTTTGAATATGTGTCCATCAG
TCTATCTACGTAAATATCTATGTATCTATCTAGATAGATATCTCACGGAT
TGTAGATCGAGGTACAAGACTAGATACACACACGGCCATTTCTACTTTTG
TACTGACTGATCCGTCCACCGTCTGTAACACGTGTGATCTCTTTGCACAG
CACCGATGGTTCGGTCTCGCCGAAGCCTCGATGGTCTCGCGGGCTCCCTC
CCACGTTTGACGACGACGCCACATGCACCAGCGCTGACAAGCCTCAAGAA
GAATCCACCACCCCGAAGACAACAGCTTCAGCTTCGACCTCTGATGAAGA
AGGAGCCCCCTCACCGCCGTCGCTTCGATCGGACGCCACGAGCAACGTCA
GCAGCACGAGCAGCAGCAGCAGCAAGGCCTATATGGCCTGGAGTTGGCTG
ATCGAGGACGAAGCGGCTAGCGAGCCCAAGCTCCAGAAACCCGACGATGC
CAACCCTGTCGTGCCGCCGTGTCTGTTGGATTCCGAGCGGGAGCTGTTGT
GCCAGCGCGTGGAGCTAAGGCTGGTCGAGGTAAGGCTGAGGATTGAGTGA
AGCCCGCTATCGTTTCGTGGGCGTGCATCCACTACAATACGGGCTGGCTG
TAGACTAGACGAATGCGTCTGCTTCTTATGCCGTAATGACGGCCTTTACC
AACCGACTCACATGCATACATACGCCGACGAAGCTTTGGCAACACCAGGG
ATGGACCTAGAAAAGGGAGAATACATACCACTCACACCTAAAAGCACGGT
GTTATTCTTTTCTTGGAGCAGGTTGGTCGGCAAGCTGCGGACATCTCGGC
GCTGGTGGACGAGTACCTGCGCTTCATGTTCCTTCGCCGGCAGCTAGAGG
GCATGCTGACTCTTGACCCTTCCCCTCTGGTGGACGACGTGTGGCAGGCT
CACATCGCGTTCGAAAGGTGAGGTATGCTGGCTGCAGCGTCCAAGCTTAG
CACTTGTGTCCGATTTTTCTTGCCTTACGCCTAGCCCTGTGCCGTTTTTC
TAGAGCGAGGTGAGAGAGAAAAGTATATTTTCATCACTTCCAACCTCTCT
CTGCCTATTTCCCTGCTGGTATTTTAGGTCCAAAAATCGAAGGGGGGTGC
AAGATACGAGAAGAGCCAACCCCGCCCGCAAAACCTGCAAGTAATGCATT
TCAGACCCCCCCTTGAAGAACTCAAGAGCTCACACCTTATCGGTACTCTC
CCTCCCGTTGCTGCTCCCCCACCCGCCCCCTCTAAAACCCTAACTCCCCC
ATGACCTTCAGCGAGTACGCCGCCTTCTGCAAGCGCACCTTCGGCGGACA
GCGGTTGGAGCTCGGAGTGCCTCGCAGGGAGATCGACCTCTCCCAACCCG
TCTTGTACGAGAACACCGTGAGCGCCTATCACCACTTTTTCGGCGTCTGT
CCGCCCACTGATTCCTGGCCATCTCTGTCGGCCGTGGGGCACCCTTCCTT
GGACGGGGAAGAAGGGCACGGGCAAGCGGCACACGCAGACACCTCAGGGC
GGCGTAGGACGCTCGTCCGCTCCAGCGAGGAAAAGTTCCGCTTCGCCAAA
GAAACCTGAGAGGAACACAAACATCAAACGTTAAATAGTTACCTTTGGCT
TTTACCTTTGTTGGCAACAACGGCGGCACTGCTGCTGTAAATTGTTTCTA
AGGCCGTTTCGGGGGATGTCCAACCGCGCGCTTGTTCGTGTTTGTTCTCG
AGGCAGGCCGACTGTGTGTGTGTGCTCGACTCTTGCGTAGTCAGTTAGTT
CTGTGTTTGGTTGGTGTTTATAAGGTAACTGGACCACGATGTCGTGCCAT
GCCCTCCTGGCATACGTCACGACACGCGTTCCGCCGTGAAGTTCGTATGC
AGTTGTGTTGCATGGTCAAGACCTTGGTACGCATTGGTGTTTCTTGATGC
TTTGAGCAGGCATTATTGGCGCGGCGAGAGGCTGACCCGCCCTACTTGGA
CGGAACCGTCCTGCCTCAATGTATGTCTTTATTTTGCTCGCACGTCACCG
TTAGTTCGCTTTGGTTGTGGAGGATGCGGGGTTGAGAGTCCTCTGGGGCT
GCATATGACGTTGTGGGGTTGGGGGTGTATTTAGATTTTTTTGCGTTGGA
AGCGTTTGGGTTGGGTTGGTGCCTTTGTGTGTTTTTGTGTTGGGTGCTTG
TGTGAAAACAGAGTACAGCCGTATTTTTCCGGTTCACGTGTCGGGACATT
GGAAAAAGGGCAACACTTGGAGCTAACGTTAGCTCAAAGTTAACCAGTAC
TCCGCGTCTGCTTGCCCACTACTTCTACCTTTTTAAGTGTGGCGCTCATT
CAGCACAGCTGTTGTGTAACGTGACGGTTGGTGTTCGGGGCGTGCTGTCG
TGTTACGGCATTATTGTGTCGGGTATCTGACCTTCTACCGTGTAGTCTAC
GTAGATAGGCTGAGACCGATTTTGTTTTTTGTTTTGGGTGCATTTTTTGC
TGGGGCTTGGAGCTCTGCAAGTTTGCAGGAGTTCTTGTTTGGGGTGTATT
TACATGGCCGCTACATAGTTCAAGGTTTAGGTTGCATGAAGGTGTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1305:2327..5573+

>mRNA_L-elsbetiae_contig1305.2414.1 ID=mRNA_L-elsbetiae_contig1305.2414.1|Name=mRNA_L-elsbetiae_contig1305.2414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1746bp|location=Sequence derived from alignment at L-elsbetiae_contig1305:2327..5573+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGCTCCGCCAAACACAACTGAGCTGTTGCTGAAAACGCACACAAG
ATGGAAGCTCCGCCAAACACAACTGAGCTGTTGCTGAAAACGCACACAAG
CACCGATGGTTCGGTCTCGCCGAAGCCTCGATGGTCTCGCGGGCTCCCTC
CCACGTTTGACGACGACGCCACATGCACCAGCGCTGACAAGCCTCAAGAA
GAATCCACCACCCCGAAGACAACAGCTTCAGCTTCGACCTCTGATGAAGA
AGGAGCCCCCTCACCGCCGTCGCTTCGATCGGACGCCACGAGCAACGTCA
GCAGCACGAGCAGCAGCAGCAGCAAGGCCTATATGGCCTGGAGTTGGCTG
ATCGAGGACGAAGCGGCTAGCGAGCCCAAGCTCCAGAAACCCGACGATGC
CAACCCTGTCGTGCCGCCGTGTCTGTTGGATTCCGAGCGGGAGCTGTTGT
GCCAGCGCGTGGAGCTAAGGCTGGTCGAGCACCGATGGTTCGGTCTCGCC
GAAGCCTCGATGGTCTCGCGGGCTCCCTCCCACGTTTGACGACGACGCCA
CATGCACCAGCGCTGACAAGCCTCAAGAAGAATCCACCACCCCGAAGACA
ACAGCTTCAGCTTCGACCTCTGATGAAGAAGGAGCCCCCTCACCGCCGTC
GCTTCGATCGGACGCCACGAGCAACGTCAGCAGCACGAGCAGCAGCAGCA
GCAAGGCCTATATGGCCTGGAGTTGGCTGATCGAGGACGAAGCGGCTAGC
GAGCCCAAGCTCCAGAAACCCGACGATGCCAACCCTGTCGTGCCGCCGTG
TCTGTTGGATTCCGAGCGGGAGCTGTTGTGCCAGCGCGTGGAGCTAAGGC
TGGTCGAGGTTGGTCGGCAAGCTGCGGACATCTCGGCGCTGGTGGACGAG
TACCTGCGCTTCATGTTCCTTCGCCGGCAGCTAGAGGGCATGCTGACTCT
TGACCCTTCCCCTCTGGTGGACGACGTGTGGCAGGCTCACATCGCGTTCG
AAAGGTTGGTCGGCAAGCTGCGGACATCTCGGCGCTGGTGGACGAGTACC
TGCGCTTCATGTTCCTTCGCCGGCAGCTAGAGGGCATGCTGACTCTTGAC
CCTTCCCCTCTGGTGGACGACGTGTGGCAGGCTCACATCGCGTTCGAAAG
CGAGTACGCCGCCTTCTGCAAGCGCACCTTCGGCGGACAGCGGTTGGAGC
TCGGAGTGCCTCGCAGGGAGATCGACCTCTCCCAACCCGTCTTGTACGAG
AACACCGTGAGCGCCTATCACCACTTTTTCGGCGTCTGTCCGCCCACTGA
TTCCTGGCCATCTCTGTCGGCCGTGGGGCACCCTTCCTTGGACGGGGAAG
AAGGGCACGGGCAAGCGGCACACGCAGACACCTCAGGGCGGCGTAGGACG
CTCGTCCGCTCCAGCGAGGAAAAGTTCCGCTTCGCCAAAGAAACCTGACG
AGTACGCCGCCTTCTGCAAGCGCACCTTCGGCGGACAGCGGTTGGAGCTC
GGAGTGCCTCGCAGGGAGATCGACCTCTCCCAACCCGTCTTGTACGAGAA
CACCGTGAGCGCCTATCACCACTTTTTCGGCGTCTGTCCGCCCACTGATT
CCTGGCCATCTCTGTCGGCCGTGGGGCACCCTTCCTTGGACGGGGAAGAA
GGGCACGGGCAAGCGGCACACGCAGACACCTCAGGGCGGCGTAGGACGCT
CGTCCGCTCCAGCGAGGAAAAGTTCCGCTTCGCCAAAGAAACCTGA
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