mRNA_L-elsbetiae_contig13045.2411.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13045.2411.1
Unique NamemRNA_L-elsbetiae_contig13045.2411.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13045.2411.1 vs. uniprot
Match: A0A7R9WS13_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WS13_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.930e-6
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 2 
Query:   83 MVRTCPHILVLSLEKNMKPKLAWLQEKVDLNDEQVVVVVKRFPRLF-------------------------GLSAKPNLGPTL------DFFRTELRGSR----EEIRELVISSPVVLSYSLEKRMIPRAAIIEKAGLGHPVFRDYVRPIAMYTD 442
            +V+  P +L  S+++N++ KL WLQE+++L+DEQ+  +++                                LSA   + PTL      +  RT L        +E ++LVIS P VL+YSL++R+IPR   +++ G+   V    +R +A YT+
Sbjct:    3 LVKRMPMVLGYSIDENIEMKLTWLQERLNLDDEQLSKIMQTXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTALSALILMNPTLCGKNVENLERTYLFYEDCIGPDEAKQLVISVPAVLTYSLDRRLIPRLEQVQEIGIH--VDAALIRRMAKYTN 155
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13045.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9WS13_9STRA1.930e-629.03Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13045contigL-elsbetiae_contig13045:94..3777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.8
Seed ortholog evalue6e-09
Seed eggNOG ortholog981085.XP_010108683.1
KEGG koko:K15032
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009507,GO:0009536,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0016070,GO:0019843,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0034622,GO:0034641,GO:0042254,GO:0042255,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.mTERF
EggNOG OGs37KJW@33090,3GBQ2@35493,4JFTJ@91835,KOG1267@1,KOG1267@2759
COG Functional cat.K
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons4
Model size1212
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13045.2411.1prot_L-elsbetiae_contig13045.2411.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13045 690..3206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.3791106-UTR-L-elsbetiae_contig13045:93..6891622815487.3791106-UTR-L-elsbetiae_contig13045:93..689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13045 94..689 -
1691682921.9342318-UTR-L-elsbetiae_contig13045:93..6891691682921.9342318-UTR-L-elsbetiae_contig13045:93..689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13045 94..689 -
1622815487.4361675-UTR-L-elsbetiae_contig13045:3206..32091622815487.4361675-UTR-L-elsbetiae_contig13045:3206..3209Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13045 3207..3209 -
1691682921.968785-UTR-L-elsbetiae_contig13045:3206..32091691682921.968785-UTR-L-elsbetiae_contig13045:3206..3209Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13045 3207..3209 -
1622815487.450668-UTR-L-elsbetiae_contig13045:3707..37771622815487.450668-UTR-L-elsbetiae_contig13045:3707..3777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13045 3708..3777 -
1691682921.976674-UTR-L-elsbetiae_contig13045:3707..37771691682921.976674-UTR-L-elsbetiae_contig13045:3707..3777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13045 3708..3777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.3943555-CDS-L-elsbetiae_contig13045:689..9721622815487.3943555-CDS-L-elsbetiae_contig13045:689..972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 690..972 -
1691682921.9444964-CDS-L-elsbetiae_contig13045:689..9721691682921.9444964-CDS-L-elsbetiae_contig13045:689..972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 690..972 -
1622815487.4098444-CDS-L-elsbetiae_contig13045:1128..12591622815487.4098444-CDS-L-elsbetiae_contig13045:1128..1259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 1129..1259 -
1691682921.9527264-CDS-L-elsbetiae_contig13045:1128..12591691682921.9527264-CDS-L-elsbetiae_contig13045:1128..1259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 1129..1259 -
1622815487.4245396-CDS-L-elsbetiae_contig13045:3077..32061622815487.4245396-CDS-L-elsbetiae_contig13045:3077..3206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 3078..3206 -
1691682921.960858-CDS-L-elsbetiae_contig13045:3077..32061691682921.960858-CDS-L-elsbetiae_contig13045:3077..3206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 3078..3206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13045.2411.1

>prot_L-elsbetiae_contig13045.2411.1 ID=prot_L-elsbetiae_contig13045.2411.1|Name=mRNA_L-elsbetiae_contig13045.2411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MAAMVRTCPHILVLSLEKNMKPKLAWLQEKVDLNDEQVVVVVKRFPRLFG
LSAKPNLGPTLDFFRTELRGSREEIRELVISSPVVLSYSLEKRMIPRAAI
IEKAGLGHPVFRDYVRPIAMYTDLRFGKWLDRLIRKGRIPPQQNPTTKAE
AAGSGDGGVADTPAAAATAAAAADTLLLGR*
back to top

mRNA from alignment at L-elsbetiae_contig13045:94..3777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13045.2411.1 ID=mRNA_L-elsbetiae_contig13045.2411.1|Name=mRNA_L-elsbetiae_contig13045.2411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3684bp|location=Sequence derived from alignment at L-elsbetiae_contig13045:94..3777- (Laminarionema elsbetiae ELsaHSoW15)
GTTGTAGCGTGGAGGAGAACCTGGAGCCGAAGCTGGCGTGGCTGCAAAAC
CGGATGCACTTGACCAAAATGTTCGTGTTGCTGTTGTCGATGGTTTCGCT
GGCAGTGTGGCAATGATGGCGTGGTTGGTACGGTTGGTGTTGGGTGTAAG
GGTAGTGATGTTATCTAGCTGCCTACTTCCCAAGGTTTAGTGTCGAAACG
GCTACCCGGGCCGTGGTGCCCACCTGTAACTGGCTGGCTGGCTGACTGGC
TGGCTACCTGTATCCAGAGTTGCTATTGTACCGACTGGTTGAGGCAATGG
ATGCTGCTGTGGTGCAGGACAAGCCCAAATGTCCTGAGAAGGCGTCGGTA
CGCTTTGGCTGAACTTTGGAGCAGGGTACGACATCTTGCAACCTCCCCTC
TCTCCCCCATTTCCTTCCTCGAATCATGGTTGTTGCGCTGTGCTAGCCTC
TCTCGCTTGTTTGCTTTGTTATGTGCTTTGAAGTATTATTGGTCTTGTTT
TCATCGGCCTATACGCATCCGCTGCTTTGTGTGTGTGTGCGTGTGTGTAT
GGGTGCGCGCTGTGGCAGGGCATGGCTGCGATGGTGCGAACTTGTCCGCA
TATTCTGGTGCTGAGCTTAGAGAAGAACATGAAGCCCAAGCTAGCGTGGC
TCCAAGAAAAGGTCGACCTGAACGATGAGCAGGTTGTTGTCGTTGTCAAG
GTACGGTCCCGGCTTTTATTTTCTGCTGAGGTCGGTAGTGCTTTTTGATT
CGTTGAATTATTGTGTTGTCGCTGCTGCTCTGCTTGTTCCGGCGTACGAT
TTCACGTGAATCACAGCTAGCTGCCAACGTACTAAGGGTGTGGGGCTTCC
TTGGTCGTATGCCAGGAGATAATTATTGCCGGGTGCCGGTTTGTATTCCT
GTTGGCGAGTGGTAGACGCTTTTCTTTGTCTCGTTTCTGCGCAGTAGCAG
CCAAGATAATTCTGATTTTGTTTTTTATAAATGGCCTGGGGTGGCCCCAG
CCTACTTCTAAAGCCCATAATACTTTTTTCTCGCACCCCCGTTCTCGAGA
GAAGATAACACACTTACTTATCGCCAGTCTTCTTGTTTATCATATTGTTT
TACTGCTGCTCACTGCTGCTCCTTGTTAGTGCTTCTTCGTTGGCTTTTCT
AGAGTGCTATCATCATGGTGCTTTGGGAGCTCTATTTTCATACGTCCCTG
ATGGTAATATGTAGGTTGGTCAGATGTAAAGACCGCAGCTCTTTCGTGTT
CGTACCGTAATCATGCGGGTTATCACACCCCCGTGTTAGCGTTTTTATAT
AGCGTATTTCTCCACAACCAGGAGGGTACCACTGCCAAAAACGGTGGTTT
TCGAAACGTCTCGTCAGGGGTTTTCCACAGAGGTATATCAGTTAGTGTTC
GCACCCTCCTGGTTTTGGGAGAAATACGCTGTAGAATAACGCTAACACGG
GGATGCGATAATCTGCATGATTACGGATGCACTTATATTAGTTGGCCAGG
CTAAAGACCGCAGCTTTTCCGCGACAACAGAGACGATTACACATTGCGAT
ATATCTTGCTTCATCCCCCCCCCACGTCATTTCTACTGTTGTGAGCATGG
CATGTAGATGTCCGAAGGGGCAGCTTGGATGTACGTACACATGTAGGTGT
GTGTATCATGCATGCCTCGGTTTCTGCGCTTTCCGTCAATGTCTGCACAG
CCAACCCAACTTACATATATATATATAGACTATCACCCGTACTCCGTAAA
CGTAATGATGATGACAGGAGAAATGTACACGAAGCGCATCAAAGGGTGGG
CAAGTGTGTGAGCGACGGCCGAAACGTTGTGTTGCATTATGGGCAACACA
TGCTATGGTACTACACATACTTGTGATTAGATACATCAATAGATGATATA
CTCCTTGATGTACATATCTTAGACAAATGCTGCTGCTGCGCTGGTGAGTT
GTGGTGAACCTTCGCGGCACACTGAATAGTGTAGGTACTGCTGCTGGATA
CAAGGTATGGTACTCCGAATGTGTGGGATTGCTGAATCAAGCTATCCCTC
CTCTTGGACAGGTCGATTTTGCAGCTAGTCCCCTCCCCTTCTCCCATGTT
CGAGCCCCTGTCGCGAGCCGCTCGCTGCGTGTGTCACGTGGAAACTCTTA
ACCAGCGCGCCATTCGGCAAAGAGTAAACCTGTGCCTCTAAAACTTGCAT
CCGATGCCGGCAGTGATAATATGCAGATACCGAAACATCTGCTGTTTGGT
AACCGCAACGAGAGTGCTGCGCACAAACGTTTTGTTATTTTTGCTCCGCC
TCACCGCTCGCTCTCTCAACACACGCACGCATATTTGGAAGATCGATTTG
TGAGCGTCTGTGCTCTAGCAGGGCCTAAAGGGCTCGAGCAACCACACGCG
ACGCCCGTCTGCGATAGGTAAGTATGGATACCCGCGAGCGCTAGCGTGGC
AGCCGGGATAATGTTGATTTGTTTTTTTATTGAACCCGTGCTTGTCTAAT
TTATTTTGTCGCACACAGAGATTCCCCAGGCTGTTTGGGCTCTCCGCAAA
GCCTAACTTGGGTCCGACGTTGGATTTCTTCCGGACGGAACTCAGAGGAT
CTCGCGAGGAAATCAGGGAGCTGGTTATTTCGAGCCCCGTCGTGCTCAGG
CGAGTTGTTGCTGCTGCTGGTGATTTTTAGACTGTTGCTTGAGCTCATTT
GCTTGATGACGTTGTTTCTGCTGGTGCTGGTGCTGCGATAGGATCACCTT
TACTTTCTCGTTTGTGCGGTTTCGCGGCCTTTGTCGCTATCGTACCGAAA
CCCAGTTACAGTCTCGAGAAGAGGATGATTCCGCGGGCGGCGATAATCGA
GAAGGCGGGGCTTGGCCATCCCGTATTCAGAGACTACGTGAGGCCTATCG
CGATGTACACGGATCTAAGGTTCGGCAAGTGGCTGGACAGGCTGATCCGC
AAAGGGAGAATACCGCCGCAGCAAAACCCGACAACAAAAGCGGAGGCTGC
TGGTAGTGGTGATGGTGGAGTTGCTGATACTCCTGCCGCCGCCGCTACTG
CTGCTGCTGCTGCCGATACTCTGTTGCTGGGAAGATAAACGAAGACTACT
ACGATCGGCCCCAAAGCGCGGCAAGACGAGACGACCAAGCTAACGACGGT
GCAGCACGCCAAGCTTCTGCACGGCCGCCTGGGGAGAGACACCGAGAAGG
TGTGTAATTCGCCGAGAGACTAGCCAAAATCGAAGCGGAGCACACCGACG
GCAGGCGATTGGTGGACGAAAAGCTGGACGAAATGCTAAATGTTGTAAAT
GGTGGCGATAGAGCATCTACCTGGTGGATTGGAGAGTCTAACGAGCAAAG
AGAGCTCGAAATTTATTGGTGTGTACGTTAATCTAGGCCTGTTCTGCACT
GCTGGGGCATTGGTTGAACTGTTCTGGCGATGGCCCAGGTGTTCGCTTGG
GTTTTGAAGAAGCGACTTCGGAATAGCTTCGTGTCGCCCTATGTATCGAT
ACTCTCCGTCTGTTTTGCCATGCTCGATAGCATGATGGGTAGCCATAGAC
AAAATTACGTCGGTTTTGGGCTGCACGCGTCATATGGGTCGACTCGTAGT
GTTTGGGCAGATAGCCAGATTTTGCGTGGAAATCAACCATTGCAATTCAC
AAAATCGCCCGGGCGCTCTCGACCGGGCGCCGTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13045:94..3777-

>mRNA_L-elsbetiae_contig13045.2411.1 ID=mRNA_L-elsbetiae_contig13045.2411.1|Name=mRNA_L-elsbetiae_contig13045.2411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig13045:94..3777- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGCGATGGTGCGAACTTGTCCGCATATTCTGGTGCTGAGCTTAGA
GAAGAACATGAAGCCCAAGCTAGCGTGGCTCCAAGAAAAGGTCGACCTGA
ACGATGAGCAGGTTGTTGTCGTTGTCAAGATGGCTGCGATGGTGCGAACT
TGTCCGCATATTCTGGTGCTGAGCTTAGAGAAGAACATGAAGCCCAAGCT
AGCGTGGCTCCAAGAAAAGGTCGACCTGAACGATGAGCAGGTTGTTGTCG
TTGTCAAGAGATTCCCCAGGCTGTTTGGGCTCTCCGCAAAGCCTAACTTG
GGTCCGACGTTGGATTTCTTCCGGACGGAACTCAGAGGATCTCGCGAGGA
AATCAGGGAGCTGGTTATTTCGAGCCCCGTCGTGCTCAGAGATTCCCCAG
GCTGTTTGGGCTCTCCGCAAAGCCTAACTTGGGTCCGACGTTGGATTTCT
TCCGGACGGAACTCAGAGGATCTCGCGAGGAAATCAGGGAGCTGGTTATT
TCGAGCCCCGTCGTGCTCAGTTACAGTCTCGAGAAGAGGATGATTCCGCG
GGCGGCGATAATCGAGAAGGCGGGGCTTGGCCATCCCGTATTCAGAGACT
ACGTGAGGCCTATCGCGATGTACACGGATCTAAGGTTCGGCAAGTGGCTG
GACAGGCTGATCCGCAAAGGGAGAATACCGCCGCAGCAAAACCCGACAAC
AAAAGCGGAGGCTGCTGGTAGTGGTGATGGTGGAGTTGCTGATACTCCTG
CCGCCGCCGCTACTGCTGCTGCTGCTGCCGATACTCTGTTGCTGGGAAGA
TAATTACAGTCTCGAGAAGAGGATGATTCCGCGGGCGGCGATAATCGAGA
AGGCGGGGCTTGGCCATCCCGTATTCAGAGACTACGTGAGGCCTATCGCG
ATGTACACGGATCTAAGGTTCGGCAAGTGGCTGGACAGGCTGATCCGCAA
AGGGAGAATACCGCCGCAGCAAAACCCGACAACAAAAGCGGAGGCTGCTG
GTAGTGGTGATGGTGGAGTTGCTGATACTCCTGCCGCCGCCGCTACTGCT
GCTGCTGCTGCCGATACTCTGTTGCTGGGAAGATAA
back to top