|
Homology
BLAST of mRNA_L-elsbetiae_contig13032.2406.1 vs. uniprot
Match: D8LM09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM09_ECTSI) HSP 1 Score: 355 bits (910), Expect = 1.200e-114 Identity = 186/202 (92.08%), Postives = 194/202 (96.04%), Query Frame = 1
Query: 1 QKKRLKDEAQKELQGDVKMQEGDLIARVLVSIKQDLYDLGAPDTSGFPAIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKDAWRLDARSKEDIGLAVELDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPKVGRGAARAF 606
Q+KRLKDE+QK+LQGDV MQEGDLIARVLVSIKQDLYDLGAPDT+GFPA+DTDDARLIVAAFGKDGPPVAAKRL VKGRQFPVTVELT DDLAFPLTKDAWRLD+RSKEDIGLAVE+DPDG+AATLDSESLTGYGVSKPLRIGAQLERTEAAVELV NPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPK GR A R F
Sbjct: 108 QRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQDLYDLGAPDTTGFPAVDTDDARLIVAAFGKDGPPVAAKRLAVKGRQFPVTVELTADDLAFPLTKDAWRLDSRSKEDIGLAVEIDPDGRAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVANPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPKGGR-AGRPF 308
BLAST of mRNA_L-elsbetiae_contig13032.2406.1 vs. uniprot
Match: A0A836CAJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ8_9STRA) HSP 1 Score: 207 bits (527), Expect = 8.170e-58 Identity = 106/196 (54.08%), Postives = 144/196 (73.47%), Query Frame = 1
Query: 10 RLKDEAQKELQGDVKMQEGDLIARVLVSIKQDLYDLGAPDTSGFPAIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKDAWRLDARSKEDIGLAVELDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPKVGRGAA 597
R++ E Q+ L+ D + G+LIARV+VSIK D + LG PD FP +DT+DARLIV AFG+ GPPVA++R+ +KG +FP +ELT DDLAFPLTK+ W DAR++++IG+AV LD DGK ATLD+ LTGYG+SKP+++G Q++RTEA V + VN L+E+ + ALP+ I LER+DA+LD KE+ A A
Sbjct: 115 RVRAEQQEVLRRDALREPGELIARVVVSIKSDAFPLGFPDVGPFPELDTEDARLIVTAFGRSGPPVASRRVPLKGLKFPALLELTADDLAFPLTKEVWLNDARAQDEIGVAVVLDVDGKLATLDAGDLTGYGISKPIKLGGQVQRTEAIVTVQVNKALEEKGQAALPSMEIAVLERIDALLDLKESIAATAAAAPA 310
BLAST of mRNA_L-elsbetiae_contig13032.2406.1 vs. uniprot
Match: A0A4D9DAT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAT9_9STRA) HSP 1 Score: 102 bits (253), Expect = 7.770e-20 Identity = 54/144 (37.50%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 67 DLIARVLVSIKQ-DLYDLGAPDTSGFP--AIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKDAWRLDARSKEDIGLAVELDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKE 489
D+IA+ V + + + Y LG P+ G A++ D+A L++ +G++G PVAAK++ ++G QFP ELT ++L FPLTK+ W D R+ +D+G++ LD DGK +T + L G+G+SKP+ I R +A +++ +K+
Sbjct: 147 DVIAKGTVRLPEIEGYPLG-PERPGVINYALENDNAALLITCYGREGGPVAAKKIQLRGLQFPYNFELTFNNLLFPLTKETWEKDNRAFDDLGISALLDLDGKFSTANENDLLGFGISKPVAIAGSQIRRDALIQVTPRTGVKQ 289
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-14_002410.1 |
Exons | 5 |
Model size | 1967 |
Cds size | 555 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815486.637128-UTR-L-elsbetiae_contig13032:486..540 | 1622815486.637128-UTR-L-elsbetiae_contig13032:486..540 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13032 487..540 + |
1691682921.5593095-UTR-L-elsbetiae_contig13032:486..540 | 1691682921.5593095-UTR-L-elsbetiae_contig13032:486..540 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13032 487..540 + |
1622815486.7301064-UTR-L-elsbetiae_contig13032:3613..4971 | 1622815486.7301064-UTR-L-elsbetiae_contig13032:3613..4971 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13032 3614..4971 + |
1691682921.615675-UTR-L-elsbetiae_contig13032:3613..4971 | 1691682921.615675-UTR-L-elsbetiae_contig13032:3613..4971 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig13032 3614..4971 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815486.651792-CDS-L-elsbetiae_contig13032:540..567 | 1622815486.651792-CDS-L-elsbetiae_contig13032:540..567 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 541..567 + |
1691682921.570885-CDS-L-elsbetiae_contig13032:540..567 | 1691682921.570885-CDS-L-elsbetiae_contig13032:540..567 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 541..567 + |
1622815486.6638815-CDS-L-elsbetiae_contig13032:1270..1483 | 1622815486.6638815-CDS-L-elsbetiae_contig13032:1270..1483 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 1271..1483 + |
1691682921.5792308-CDS-L-elsbetiae_contig13032:1270..1483 | 1691682921.5792308-CDS-L-elsbetiae_contig13032:1270..1483 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 1271..1483 + |
1622815486.6846468-CDS-L-elsbetiae_contig13032:1851..1992 | 1622815486.6846468-CDS-L-elsbetiae_contig13032:1851..1992 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 1852..1992 + |
1691682921.5872452-CDS-L-elsbetiae_contig13032:1851..1992 | 1691682921.5872452-CDS-L-elsbetiae_contig13032:1851..1992 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 1852..1992 + |
1622815486.7003708-CDS-L-elsbetiae_contig13032:2673..2791 | 1622815486.7003708-CDS-L-elsbetiae_contig13032:2673..2791 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 2674..2791 + |
1691682921.5979896-CDS-L-elsbetiae_contig13032:2673..2791 | 1691682921.5979896-CDS-L-elsbetiae_contig13032:2673..2791 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 2674..2791 + |
1622815486.7159796-CDS-L-elsbetiae_contig13032:3557..3613 | 1622815486.7159796-CDS-L-elsbetiae_contig13032:3557..3613 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 3558..3613 + |
1691682921.6079648-CDS-L-elsbetiae_contig13032:3557..3613 | 1691682921.6079648-CDS-L-elsbetiae_contig13032:3557..3613 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig13032 3558..3613 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13032.2406.1 >prot_L-elsbetiae_contig13032.2406.1 ID=prot_L-elsbetiae_contig13032.2406.1|Name=mRNA_L-elsbetiae_contig13032.2406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MQEGDLIARVLVSIKQDLYDLGAPDTSGFPAIDTDDARLIVAAFGKDGPP VAAKRLTVKGRQFPVTVELTVDDLAFPLTKDAWRLDARSKEDIGLAVELD PDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKERAEQA LPNEGIQQLERVDAMLDYKEAKAPKVGRGAARAF* back to topmRNA from alignment at L-elsbetiae_contig13032:487..4971+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig13032.2406.1 ID=mRNA_L-elsbetiae_contig13032.2406.1|Name=mRNA_L-elsbetiae_contig13032.2406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4485bp|location=Sequence derived from alignment at L-elsbetiae_contig13032:487..4971+ (Laminarionema elsbetiae ELsaHSoW15) CAGAAAAAGAGACTTAAGGACGAGGCCCAGAAGGAGCTCCAGGGGGACGT
CAAGATGCAAGAAGGGGATCTCATTGCAAGAGTGAGTCTGGGCTTGTATC
CGAGCACGTTCCGTGTGCCGCTGTGCCGCTGCTGCTTGCCCTCTTTTGAT
TTGAAGAAGCCGTCGGCTGGGGTTGGTTCTCGCGTCATATTTTCTTGCTA
TTTTTCGCGCTCTCTCTTGGTCCAGCTACATATCTCGTACATAGCTCACT
ATTCTCCTTGCTGTTTTTTGTCCTCTGGCCGTATTTGTGTATCGCTCCTG
CCCCTCTATGATGAAGCATGACATACGAGCTGATCTGTGGTAGGTATATC
TACTGGGACGATTGCATGCGTGTTCGCGAGCGCCTGGTCCGGTCTGGCTG
AGCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA
CCCCCCCCCCCCCCCCCCCCCCCAACCACCAAAAACNNNNNNNNNNCATG
GAATACGAGCTGATCTGTGGTAGGTATATCTACTGGGACGATTGCATGCG
TGTTCGCGAGCGCCTGGTCCGGTCTGGCTGAGCCCCCCCCCCCCCCCCCC
AACAGCATTAGTCCCAACGACTACAGGGACCCTCAAGTGTCAGGCTTCAC
AGCAGTAAATGGGCAAACGCTGCAGCCCTGTGCGCCCCTGAACTGCTGTG
TATTGTTTTCTTCCCACCATCCCGACACACACGTGCGACACGACGCGGCA
CGACCCGACCGACACGTCCGTCCTCTGAAAAAAGGTGCTCGTGTCGATAA
AGCAAGACCTGTACGACCTGGGGGCGCCGGACACAAGCGGGTTCCCGGCG
ATCGACACCGACGACGCGAGGCTGATCGTGGCCGCCTTCGGGAAGGACGG
CCCGCCCGTGGCGGCGAAGCGGCTGACCGTGAAGGGGAGGCAGTTCCCGG
TCACCGTGGAGCTGACGGTGGACGACTTGGCCTTCCCGTTGACGAAGGTA
AGCCGGAGCGGGAGCAGGAGATGGGTTGCTGTTGTGGTTTGGTGGTGGTG
GTGGCGGCAATGGCGGTGGTGGTGCTGGTGATGCTTGCGGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGTACGAGTGCGTGTTCCTTCGGACAATTAGTTGTAACAT
TGAGACAGCAACCACACAGCAGGGGCACACACACGGGTGCTCCTCTCCTC
TGGCCTCCTTCACTCATGTCCTGTTAACAAACGAAAAAAAGAGCCGAATG
ACGCCAACGATAGCCAGACAGACACCGTACTGTGCAATCTTCGCGCCCAT
CCCCCCCCGAACCAGGACGCGTGGAGGCTCGACGCCCGTTCGAAGGAGGA
CATCGGACTGGCGGTGGAGCTCGACCCCGATGGCAAGGCAGCCACGCTGG
ACTCGGAGAGCCTGACGGGGTACGGCGTTAGCAAACCGTTGCGCATCGGG
GCGCAGGTGGGTGGGTTGCTCTGATCAAATATTCCCCGATTTCGTCCCGT
CTTGGTTCGTTGTGCCCCTTCTCTGCGATAGGTAGGTAGGCGGGGCGGGG
CGGTGTTTTCACCAACGCTCTAGGGGTTGGTTCGGCCGGAGAAGTATGCC
ACAGGCGTGAGCGAGGCGCAGGCTACGTACATCCTTTCTTGGTCGCGTTA
TTTTTTGTGTGTTGTGTGCCTATTTTGTATCTCTTGGGTGATCGGGTTTG
TTGTGAGTGCCCTCCTTCTCTGTGTGCGAGGGGGAGACGCGTTGTTGTTG
TGCGCCTGGCCCCTGTACCCCCGCGCGAAATGGTATGCATTTACCATGGA
AGCCATCGACGACATGTTCCCTTCACGGGGCCGCCAAGCTTCCTCCGTGG
GCATTTTTTCTGCGCACGCCACACCAAGCGGTATTTACCCGAAGCAGAAG
ACGGACGCGGTGGTGCCCTCATGCTGGCACCCAACAATCTTCAAGACTTC
GTGTGCCCGAGAGAAAGACGAACGCACCCAGCCACTCGCTAAGACAACAC
GGGGAAGGAGGGGGCTCTCTTCTTGTCGTTTGAAACATGCTTGCTCGCCT
TGCCCAGATTTGGACGCGTACAAAAGAATGCCGCTGCCGCTCACAACGCG
TTTCTTTTGGTTCGTATACCCCCCCCCCCTTCGCCAGCTGGAGCGCACGG
AGGCGGCCGTAGAGCTGGTGGTAAACCCGCAGCTGAAGGAGAGGGCTGAG
CAGGCCCTGCCAAATGAGGGTATCCAGCAGCTCGAGCGCGTAGACGCGAT
GCTGGGTAAGTGTTGTTGTCGCGTGGTTGGGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTAGTGATGTTGCCGTTGTAGGTGTTGGTGCAAGTGGTT
CCTTACCTCTGCTCCCCGTGAGTCTCCTGCCGAGCCCGACTTGGCTGTGA
TTGCTGGCCGTGCGTGCCGTTCTAGTCGTTCGTTCCACGACTCGTGAGTT
CAAGGTGTTCGATTCAGCCTTGGTTGTCGGTACATATATCCACGCATAGA
TACGATAACCCACTTTAGAGCGCTTGTTTTTTCGTGGCTCGGGGGCGTGC
GTCACGCGAGGTTGGACGTGCGAATGTGAATGACAGAGGTAGTCTAGGCG
GTGTTGCAGCAATTGACTCTGTAGTCGTCAACCCGTGATTTAGATTCGAA
TACGTGCTTGCCCTGCTTTATACCTATACAAGATGGCATTTATTTACCAC
AATTCTACGTGAACTTCTCGCACGCTGGTCTCTGGGATCCCGTTACATAG
CATGACATGGTATGGTATGGTACGGTACGGTTCATCGGCCCCCGTTGCCC
GATACCATGTGACAACCTTTTATCGGCTGCCCCTCCCTCGTTTGTCGTGT
TTGTCCCGTCCCCGTCCTTGCTGGGGTCTCACTTGCGTTGCCCCCCCTCG
CGTGGACGTCTCCACCGCCCCCGCAACCCTCACCATCATCACGCTTGGAA
ACGATCTGCGTCTACATACATATAATCATAATTTTCCGCCTGTTTTGTTT
TCCTTTTTTTTTTTTGCCAAGACTACAAGGAGGCCAAGGCGCCAAAGGTT
GGTCGGGGTGCCGCCAGGGCTTTCTGATGATGAGTATTCGTCTTCAGGTT
TCGTTTCGTTTAAGGCTCAGAGGAGGGGGGGGGGGGGGCTAGTGAAGCCA
AGTATTGCCCTTGGTATGTATTTGGTTCCCTCCGCGCGTGGGCATGGGCT
GAGTGGAACGCGCGAGCGGGCTAGGTGTTTTTGGAAGGGCAAGAACATGG
CAGCAGCAGCAGCAGCAGAGCAGCAGCAGTAGCAGCAGGAACAGGAGGAG
TCCCCCGCTTCAAGGTAGACACGCGGCTTGCGAGAGAGGAGGGGTTGTTG
GCTGCTGGACCCCCGTGGAGAGGCTCGTCTGTGATCCATCCTGGGAAGGC
GTGAGTCGTCAGCACGGGGCGAGTGGATCGAATCGCCAGCCCAGGCGCAA
GCAAGCAACCCCGGTTTTCCGCTCGCTGAACCGGGTTGGCGTTGGGCGTC
GTGTAGTTCTTTCGGCTCTGCGATAGCTGAGGTCGGTCTTCTTCTACCGC
CAACCTACAGTTTCGGGGAAGGGGGAAAGGAGACGTGAAATCTGAAAATT
AGGTCATGTGGGATGTGGCGTTGTGACGCGATCCCCTCAAGTTTACAAGG
TGCTGCCAGCTGCAAGCCTCGTGTGATTAGGTAACTTTTAAATCGTTCCC
GATAGGTTTAGCCACTTGGCTCCTGTCCTCCCGAAGTCTGACGGACGTGT
CTCGTTTTGCACGCTGCTAAATTAGATTCGTGCTGGGTGGGATATTTGGT
GCGATTCCCCTATAACCTACAAGCATTGATACAGTGTTTTGTCGTGCGGA
CCGAATGCCGCGACTTGGTTGGGCTGATACATACGAGTGCTGCCGTGGGC
AGCATTTAGCAAAGAACGCTTGAGAGATGCTTACTCCTTGCCGCGTCTAC
GGTCGTCGTTCCCTCGATGCAGAACGCCGTGCGCGCATGTTCGATTACAT
GTTTCCATCTGCCGGCTGCTATTTACTTTATTTCCCTGCTGTTTGTGTGA
AGCATACATACTGCAAGTTCGCCATTTTCTCTTTCAGGCCGTCTCCGTTT
TGTGACTTCCGTCAGCTCGATCGGCATGGACTTGATAACAATGGTTTCCA
GTGTTTTTTTTGTTGGTGTGCGTCAGGACAACAGCAACATCATTTTGCGG
CCATAGAAAGCGTCCTTGGCTGCGATGAGCGTAACAACCACGAGCGGAGC
ATTTTAGATGGGAGGGCAATGAAACGGGGGGTGGGTACAGCAGTAGACGA
CTAATGTCCTTCTGCATCATACTTCATCGTAAAAGTAGAATGAAACCAAA
ATTATTGCCGTTACCACCCCACAATCGTAACACCGGGTTGTTTTCCTGAT
GAGTCGGCCGTTGCTTATTTCGTCGTCGATGCACA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig13032:487..4971+ >mRNA_L-elsbetiae_contig13032.2406.1 ID=mRNA_L-elsbetiae_contig13032.2406.1|Name=mRNA_L-elsbetiae_contig13032.2406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig13032:487..4971+ (Laminarionema elsbetiae ELsaHSoW15) ATGCAAGAAGGGGATCTCATTGCAAGAATGCAAGAAGGGGATCTCATTGC AAGAGTGCTCGTGTCGATAAAGCAAGACCTGTACGACCTGGGGGCGCCGG ACACAAGCGGGTTCCCGGCGATCGACACCGACGACGCGAGGCTGATCGTG GCCGCCTTCGGGAAGGACGGCCCGCCCGTGGCGGCGAAGCGGCTGACCGT GAAGGGGAGGCAGTTCCCGGTCACCGTGGAGCTGACGGTGGACGACTTGG CCTTCCCGTTGACGAAGGTGCTCGTGTCGATAAAGCAAGACCTGTACGAC CTGGGGGCGCCGGACACAAGCGGGTTCCCGGCGATCGACACCGACGACGC GAGGCTGATCGTGGCCGCCTTCGGGAAGGACGGCCCGCCCGTGGCGGCGA AGCGGCTGACCGTGAAGGGGAGGCAGTTCCCGGTCACCGTGGAGCTGACG GTGGACGACTTGGCCTTCCCGTTGACGAAGGACGCGTGGAGGCTCGACGC CCGTTCGAAGGAGGACATCGGACTGGCGGTGGAGCTCGACCCCGATGGCA AGGCAGCCACGCTGGACTCGGAGAGCCTGACGGGGTACGGCGTTAGCAAA CCGTTGCGCATCGGGGCGCAGGACGCGTGGAGGCTCGACGCCCGTTCGAA GGAGGACATCGGACTGGCGGTGGAGCTCGACCCCGATGGCAAGGCAGCCA CGCTGGACTCGGAGAGCCTGACGGGGTACGGCGTTAGCAAACCGTTGCGC ATCGGGGCGCAGCTGGAGCGCACGGAGGCGGCCGTAGAGCTGGTGGTAAA CCCGCAGCTGAAGGAGAGGGCTGAGCAGGCCCTGCCAAATGAGGGTATCC AGCAGCTCGAGCGCGTAGACGCGATGCTGGCTGGAGCGCACGGAGGCGGC CGTAGAGCTGGTGGTAAACCCGCAGCTGAAGGAGAGGGCTGAGCAGGCCC TGCCAAATGAGGGTATCCAGCAGCTCGAGCGCGTAGACGCGATGCTGGAC TACAAGGAGGCCAAGGCGCCAAAGGTTGGTCGGGGTGCCGCCAGGGCTTT CTGAACTACAAGGAGGCCAAGGCGCCAAAGGTTGGTCGGGGTGCCGCCAG GGCTTTCTGA back to top
|